Ergic3 (ERGIC and golgi 3) - Rat Genome Database

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Gene: Ergic3 (ERGIC and golgi 3) Mus musculus
Analyze
Symbol: Ergic3
Name: ERGIC and golgi 3
RGD ID: 1317747
MGI Page MGI
Description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; positive regulation of intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum-Golgi intermediate compartment. Predicted to be part of retrograde transporter complex, Golgi to ER. Predicted to be active in COPII-coated ER to Golgi transport vesicle; Golgi membrane; and endoplasmic reticulum membrane. Is expressed in cerebellum; neocortex; and spleen. Orthologous to human ERGIC3 (ERGIC and golgi 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310015B14Rik; AV318804; CGI-5; CGI-54; D2Ucl; D2Ucla1; DKFZp547A2190; endoplasmic reticulum-Golgi intermediate compartment protein 3; NY-BR-; NY-BR-84; Sdbcag; Sdbcag84; serologically defined breast cancer antigen 84; serologically defined breast cancer antigen NY-BR-84 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,849,948 - 155,860,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,849,965 - 155,860,199 (+)EnsemblGRCm39 Ensembl
GRCm382156,008,028 - 156,018,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,008,045 - 156,018,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,833,861 - 155,844,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,699,558 - 155,709,720 (+)NCBIMGSCv36mm8
Celera2161,941,989 - 161,952,143 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Endoplasmic reticulum-Golgi intermediate compartment protein 3 knockdown suppresses lung cancer through endoplasmic reticulum stress-induced autophagy. Hong SH, etal., Oncotarget. 2016 Oct 4;7(40):65335-65347. doi: 10.18632/oncotarget.11678.
2. A novel family of Cys-Cys, His-Cys zinc finger transcription factors expressed in developing nervous system and pituitary gland. Jiang Y, etal., J Biol Chem 1996 May 3;271(18):10723-30.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Linkage mapping of 40 randomly isolated liver cDNA clones in the mouse. Warden CH, etal., Genomics 1993 Nov;18(2):295-307.
9. Suppression subtractive hybridization identified differentially expressed genes in lung adenocarcinoma: ERGIC3 as a novel lung cancer-related gene. Wu M, etal., BMC Cancer. 2013 Feb 1;13:44. doi: 10.1186/1471-2407-13-44.
Additional References at PubMed
PMID:8827514   PMID:8889548   PMID:9457688   PMID:10349636   PMID:10438476   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12663859   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17015433   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23055939   PMID:26272612   PMID:30550785   PMID:30995482  
PMID:32554809   PMID:34994051  


Genomics

Comparative Map Data
Ergic3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,849,948 - 155,860,199 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,849,965 - 155,860,199 (+)EnsemblGRCm39 Ensembl
GRCm382156,008,028 - 156,018,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,008,045 - 156,018,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv372155,833,861 - 155,844,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,699,558 - 155,709,720 (+)NCBIMGSCv36mm8
Celera2161,941,989 - 161,952,143 (+)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.32NCBI
ERGIC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,542,078 - 35,557,634 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,542,038 - 35,557,634 (+)EnsemblGRCh38hg38GRCh38
GRCh372034,129,827 - 34,145,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,593,192 - 33,608,819 (+)NCBINCBI36Build 36hg18NCBI36
Build 342033,593,191 - 33,608,818NCBI
Celera2030,878,102 - 30,893,718 (+)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2030,907,313 - 30,922,911 (+)NCBIHuRef
CHM1_12034,031,121 - 34,046,732 (+)NCBICHM1_1
T2T-CHM13v2.02037,262,891 - 37,278,470 (+)NCBIT2T-CHM13v2.0
Ergic3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83164,985,108 - 164,994,897 (+)NCBIGRCr8
mRatBN7.23144,525,059 - 144,534,813 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,525,092 - 144,534,813 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,390,685 - 148,400,411 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,007,963 - 157,017,689 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,747,487 - 154,757,213 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,553,567 - 151,563,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,553,578 - 151,563,364 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,918,091 - 157,927,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,416,599 - 146,426,325 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13146,322,101 - 146,331,944 (+)NCBI
Celera3143,246,844 - 143,256,571 (+)NCBICelera
Cytogenetic Map3q42NCBI
Ergic3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542225,884,080 - 25,893,236 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542225,884,138 - 25,893,237 (-)NCBIChiLan1.0ChiLan1.0
ERGIC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,272,567 - 41,288,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,265,670 - 41,281,370 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,867,571 - 31,883,181 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12032,986,131 - 33,001,737 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2032,986,131 - 33,001,737 (+)Ensemblpanpan1.1panPan2
ERGIC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,494,494 - 24,508,114 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,494,524 - 24,508,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,139,705 - 24,153,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,187,036 - 25,200,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,187,082 - 25,200,658 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,473,444 - 24,487,049 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,568,398 - 24,582,205 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,007,842 - 25,021,464 (+)NCBIUU_Cfam_GSD_1.0
Ergic3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,479,456 - 173,493,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,256,417 - 5,270,344 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,256,450 - 5,270,073 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERGIC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,885,117 - 38,899,138 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,884,830 - 38,899,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,006,025 - 44,020,021 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERGIC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,474,811 - 56,482,788 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660872,718,121 - 2,822,817 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ergic3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,872,518 - 3,881,937 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,872,518 - 3,881,994 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ergic3
547 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1714
Count of miRNA genes:491
Interacting mature miRNAs:573
Transcripts:ENSMUST00000006035, ENSMUST00000088650, ENSMUST00000130793, ENSMUST00000137545, ENSMUST00000142859, ENSMUST00000144707, ENSMUST00000149381, ENSMUST00000150970, ENSMUST00000152568, ENSMUST00000155370
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
13524521Bodwtq2_mbody wweight QTL 2 (mouse)2153456184156386184Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse

Markers in Region
AV318804  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,018,183 - 156,018,264UniSTSGRCm38
MGSCv372155,843,919 - 155,844,000UniSTSGRCm37
Celera2161,952,047 - 161,952,128UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
Whitehead/MRC_RH21846.87UniSTS
stSG636695  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,008,161 - 156,008,392UniSTSGRCm38
MGSCv372155,833,897 - 155,834,128UniSTSGRCm37
Celera2161,942,025 - 161,942,256UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS
MARC_26120-26121:1030366872:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,010,492 - 156,011,231UniSTSGRCm38
MGSCv372155,836,228 - 155,836,967UniSTSGRCm37
Celera2161,944,356 - 161,945,095UniSTS
Cytogenetic Map2H2UniSTS
cM Map292.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000006035   ⟹   ENSMUSP00000006035
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,849,965 - 155,860,199 (+)Ensembl
GRCm38.p6 Ensembl2156,008,045 - 156,018,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000088650   ⟹   ENSMUSP00000086025
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,850,026 - 155,860,199 (+)Ensembl
GRCm38.p6 Ensembl2156,008,106 - 156,018,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130793
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,859,135 - 155,860,016 (+)Ensembl
GRCm38.p6 Ensembl2156,017,215 - 156,018,096 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137545
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,859,466 - 155,860,199 (+)Ensembl
GRCm38.p6 Ensembl2156,017,546 - 156,018,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142859   ⟹   ENSMUSP00000115912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,850,539 - 155,859,558 (+)Ensembl
GRCm38.p6 Ensembl2156,008,619 - 156,017,638 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,850,143 - 155,853,153 (+)Ensembl
GRCm38.p6 Ensembl2156,008,223 - 156,011,233 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149381
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,859,568 - 155,860,197 (+)Ensembl
GRCm38.p6 Ensembl2156,017,648 - 156,018,277 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,858,429 - 155,860,070 (+)Ensembl
GRCm38.p6 Ensembl2156,016,509 - 156,018,150 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,859,414 - 155,860,199 (+)Ensembl
GRCm38.p6 Ensembl2156,017,494 - 156,018,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155370   ⟹   ENSMUSP00000119051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,852,367 - 155,860,007 (+)Ensembl
GRCm38.p6 Ensembl2156,010,447 - 156,018,087 (+)Ensembl
RefSeq Acc Id: NM_001356413   ⟹   NP_001343342
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,849,948 - 155,860,199 (+)NCBI
GRCm382156,008,028 - 156,018,279 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001356414   ⟹   NP_001343343
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,849,948 - 155,860,199 (+)NCBI
GRCm382156,008,028 - 156,018,279 (+)NCBI
Sequence:
RefSeq Acc Id: NM_025516   ⟹   NP_079792
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,849,948 - 155,860,199 (+)NCBI
GRCm382156,008,028 - 156,018,279 (+)NCBI
MGSCv372155,833,861 - 155,844,015 (+)RGD
Celera2161,941,989 - 161,952,143 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_079792   ⟸   NM_025516
- Peptide Label: isoform 3
- UniProtKB: B7ZCN9 (UniProtKB/Swiss-Prot),   Q6PGA7 (UniProtKB/Swiss-Prot),   Q9CQE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001343342   ⟸   NM_001356413
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001343343   ⟸   NM_001356414
- Peptide Label: isoform 2
Ensembl Acc Id: ENSMUSP00000006035   ⟸   ENSMUST00000006035
Ensembl Acc Id: ENSMUSP00000086025   ⟸   ENSMUST00000088650
Ensembl Acc Id: ENSMUSP00000115912   ⟸   ENSMUST00000142859
Ensembl Acc Id: ENSMUSP00000119051   ⟸   ENSMUST00000155370
Protein Domains
Endoplasmic reticulum vesicle transporter C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQE7-F1-model_v2 AlphaFold Q9CQE7 1-383 view protein structure

Promoters
RGD ID:6831384
Promoter ID:MM_KWN:32583
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_001145352,   OTTMUST00000038177,   OTTMUST00000038178,   OTTMUST00000044524,   OTTMUST00000044526,   OTTMUST00000044527,   OTTMUST00000044529,   OTTMUST00000060769,   UC008NLV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362155,832,626 - 155,834,187 (+)MPROMDB
RGD ID:6831315
Promoter ID:MM_KWN:32586
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000044531,   OTTMUST00000044533,   OTTMUST00000044534,   OTTMUST00000060770
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362155,842,151 - 155,842,651 (+)MPROMDB
RGD ID:6879388
Promoter ID:EPDNEW_M3145
Type:initiation region
Name:Ergic3_1
Description:Mus musculus ERGIC and golgi 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382156,008,107 - 156,008,167EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913616 AgrOrtholog
Ensembl Genes ENSMUSG00000005881 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006035 ENTREZGENE
  ENSMUST00000006035.13 UniProtKB/Swiss-Prot
  ENSMUST00000088650 ENTREZGENE
  ENSMUST00000088650.11 UniProtKB/Swiss-Prot
  ENSMUST00000142859.8 UniProtKB/TrEMBL
  ENSMUST00000155370.2 UniProtKB/TrEMBL
InterPro Erv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Erv_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Erv_N UniProtKB/Swiss-Prot
KEGG Report mmu:66366 UniProtKB/Swiss-Prot
MGD MGI:1913616 ENTREZGENE
NCBI Gene 66366 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10984 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COPIIcoated_ERV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ERGIC_N UniProtKB/Swiss-Prot
PhenoGen Ergic3 PhenoGen
UniProt B7ZCN9 ENTREZGENE
  ERGI3_MOUSE UniProtKB/Swiss-Prot
  F6RK81_MOUSE UniProtKB/TrEMBL
  F6UIS1_MOUSE UniProtKB/TrEMBL
  Q6PGA7 ENTREZGENE
  Q9CQE7 ENTREZGENE
UniProt Secondary B7ZCN9 UniProtKB/Swiss-Prot
  Q6PGA7 UniProtKB/Swiss-Prot