Eif5a (eukaryotic translation initiation factor 5A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Eif5a (eukaryotic translation initiation factor 5A) Mus musculus
Analyze
Symbol: Eif5a
Name: eukaryotic translation initiation factor 5A
RGD ID: 1317563
MGI Page MGI
Description: Predicted to enable U6 snRNA binding activity and translation elongation factor activity. Acts upstream of or within positive regulation of apoptotic process. Located in cytoplasm and nucleus. Is active in synapse. Is expressed in several structures, including central nervous system; extraembryonic component; eye; liver; and pancreas epithelium. Orthologous to several human genes including EIF5A (eukaryotic translation initiation factor 5A).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AA410058; D19Wsu54; D19Wsu54e; DNA segment, Chr 19, Wayne State University 54, expressed; eIF-4D; eIF-5A; eIF-5A-1; eIF-5A1; Eif4d; Eif5a1; eukaryotic initiation factor 5A; eukaryotic translation initiation factor 5A-1; Eukaryotic translation initiation factor 5A1; MGC6725
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Eif5al3-ps   Gm14016   Gm17819  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,807,538 - 69,812,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,807,540 - 69,812,784 (-)EnsemblGRCm39 Ensembl
GRCm381169,916,712 - 69,921,958 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,916,714 - 69,921,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,730,214 - 69,735,460 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,732,917 - 69,737,536 (-)NCBIMGSCv36mm8
Celera1177,464,600 - 77,469,965 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dimethoxyphenol  (ISO)
2-bromohexadecanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxynon-2-enal  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bleomycin A2  (ISO)
bortezomib  (ISO)
bromobenzene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
cocaine  (ISO)
CU-O LINKAGE  (EXP)
Cuprizon  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
furfural  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
haloperidol  (ISO)
heroin  (ISO)
ivermectin  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
microcystin RR  (ISO)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
morphine  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (EXP)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
PhIP  (ISO)
pioglitazone  (EXP)
propiconazole  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sulfadimethoxine  (ISO)
sulforaphane  (ISO)
T-2 toxin  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. Hypusine Signaling Promotes Pulmonary Vascular Remodeling in Pulmonary Arterial Hypertension. Lemay SE, etal., Am J Respir Crit Care Med. 2024 Jun 1;209(11):1376-1391. doi: 10.1164/rccm.202305-0909OC.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Upregulation of eIF-5A1 in the paralyzed muscle after spinal cord transection associates with spontaneous hindlimb locomotor recovery in rats by upregulation of the ErbB, MAPK and neurotrophin signal pathways. Shang FF, etal., J Proteomics. 2013 Oct 8;91:188-99. doi: 10.1016/j.jprot.2012.12.002. Epub 2012 Dec 11.
7. Overexpression of CK20, MAP3K8 and EIF5A correlates with poor prognosis in early-onset colorectal cancer patients. Tunca B, etal., J Cancer Res Clin Oncol. 2013 Apr;139(4):691-702. doi: 10.1007/s00432-013-1372-x. Epub 2013 Jan 16.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11161802   PMID:12210765   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12894223  
PMID:12904583   PMID:14610273   PMID:15377278   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16880268   PMID:17707773   PMID:18554416   PMID:18799693   PMID:20181941  
PMID:20458750   PMID:20501948   PMID:21267068   PMID:21677750   PMID:21850436   PMID:21873635   PMID:22421546   PMID:23665500   PMID:24165879   PMID:24457600   PMID:24614889   PMID:25211037  
PMID:26037925   PMID:30196744   PMID:30333137   PMID:30457570   PMID:30595499   PMID:30713523   PMID:31130465   PMID:32325033   PMID:32554809   PMID:32817651   PMID:33811703   PMID:34133714  
PMID:34688659   PMID:36114006   PMID:36417873   PMID:36848144   PMID:36893894   PMID:37333770   PMID:37653021   PMID:37743008  


Genomics

Comparative Map Data
Eif5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,807,538 - 69,812,784 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,807,540 - 69,812,784 (-)EnsemblGRCm39 Ensembl
GRCm381169,916,712 - 69,921,958 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,916,714 - 69,921,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,730,214 - 69,735,460 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,732,917 - 69,737,536 (-)NCBIMGSCv36mm8
Celera1177,464,600 - 77,469,965 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1142.92NCBI
EIF5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,306,999 - 7,312,463 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,306,999 - 7,312,463 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,210,318 - 7,215,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,151,693 - 7,156,498 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,151,692 - 7,156,496NCBI
Celera177,236,257 - 7,241,723 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,104,783 - 7,109,831 (+)NCBIHuRef
CHM1_1177,219,093 - 7,224,550 (+)NCBICHM1_1
T2T-CHM13v2.0177,210,983 - 7,216,447 (+)NCBIT2T-CHM13v2.0
Eif5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,138,821 - 55,143,272 (-)NCBIGRCr8
mRatBN7.21054,640,104 - 54,644,845 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,640,024 - 54,644,656 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,302,660 - 59,307,064 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,791,232 - 58,795,636 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,298,539 - 54,302,941 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,527,075 - 56,531,615 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,527,085 - 56,531,483 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,272,194 - 56,276,934 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,760,289 - 56,764,689 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,773,911 - 56,778,625 (-)NCBI
Celera1053,794,046 - 53,798,461 (-)NCBICelera
Cytogenetic Map10q24NCBI
Eif5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554679,603,800 - 9,608,490 (-)NCBIChiLan1.0ChiLan1.0
EIF5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21914,903,844 - 14,909,346 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11716,869,683 - 16,875,178 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,341,076 - 7,346,570 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,327,363 - 7,333,270 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,327,363 - 7,333,270 (+)Ensemblpanpan1.1panPan2
EIF5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,268,103 - 32,272,970 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,405,817 - 32,410,703 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,373,168 - 32,378,059 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,372,977 - 32,378,002 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,338,605 - 32,343,491 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,297,394 - 32,302,267 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,474,419 - 32,479,302 (+)NCBIUU_Cfam_GSD_1.0
Eif5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,129,875 - 47,134,887 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936595604,268 - 609,075 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11252,659,040 - 52,664,686 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23139,934,584 - 139,940,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,685,908 - 6,691,159 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605914,719,550 - 14,724,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247869,933,325 - 9,938,178 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eif5a
135 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3769
Count of miRNA genes:383
Interacting mature miRNAs:454
Transcripts:ENSMUST00000043419, ENSMUST00000070996, ENSMUST00000071026, ENSMUST00000108607, ENSMUST00000108608, ENSMUST00000108609, ENSMUST00000108610, ENSMUST00000108611, ENSMUST00000108612, ENSMUST00000108613, ENSMUST00000152589, ENSMUST00000153652, ENSMUST00000164359
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
36049792Ars5_mantibody response to SARS-CoV 5, day 7, IgM (mouse)116899082672490826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115849055574754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
35673314Ari2_mantibody response to influenza 2, day 10, IgG3 (mouse)116899082672490826Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116707819179813912Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
36049778Ars6_mantibody response to SARS-CoV 6, day 15, IgM (mouse)116899082672490826Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
36049779Ars7_mantibody response to SARS-CoV 7, day 29, IgG1 (mouse)116899082672490826Mouse
36049790Ars3_mantibody response to SARS-CoV 3, day 7, IgG2b (mouse)116899082672490826Mouse
36049791Ars4_mantibody response to SARS-CoV 4, day 7, IgG3 (mouse)116899082672490826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
36049788Ars1_mantibody response to SARS-CoV 1, day 7, IgG1 (mouse)116899082672490826Mouse
36049789Ars2_mantibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049786Ars10_mantibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)116899082672490826Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
36049787Ars11_mantibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)116899082672490826Mouse
36049784Ars8_mantibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)116899082672490826Mouse
36049785Ars9_mantibody response to SARS-CoV 9, day 29, IgM (mouse)116899082672490826Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116331940781830473Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse

Markers in Region
AI505953  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381169,916,472 - 69,916,554UniSTSGRCm38
MGSCv371169,729,974 - 69,730,056UniSTSGRCm37
Celera1177,464,360 - 77,464,442UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map11B4UniSTS
Whitehead/MRC_RH11912.86UniSTS
RH125923  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B3UniSTS
Whitehead/MRC_RH13879.51UniSTS
RH126545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381917,693,264 - 17,693,509UniSTSGRCm38
GRCm381169,916,745 - 69,916,994UniSTSGRCm38
MGSCv371917,767,754 - 17,767,999UniSTSGRCm37
MGSCv371169,730,247 - 69,730,496UniSTSGRCm37
Celera1177,464,633 - 77,464,882UniSTS
Celera1918,373,033 - 18,373,278UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map19BUniSTS
Cytogenetic Map11B3UniSTS
cM Map1915.0UniSTS
cM Map11 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001166596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI850684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY129329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR933541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX218195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX237346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000043419   ⟹   ENSMUSP00000047008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,812,212 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,921,386 (-)Ensembl
Ensembl Acc Id: ENSMUST00000070996   ⟹   ENSMUSP00000067077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,812,212 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,921,386 (-)Ensembl
Ensembl Acc Id: ENSMUST00000071026   ⟹   ENSMUSP00000068651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,812,784 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,921,958 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108607   ⟹   ENSMUSP00000104247
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,923 - 69,812,016 (-)Ensembl
GRCm38.p6 Ensembl1169,917,097 - 69,921,190 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108608   ⟹   ENSMUSP00000104248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,913 - 69,811,890 (-)Ensembl
GRCm38.p6 Ensembl1169,917,087 - 69,921,064 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108609   ⟹   ENSMUSP00000104249
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,857 - 69,811,890 (-)Ensembl
GRCm38.p6 Ensembl1169,917,031 - 69,921,064 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108610   ⟹   ENSMUSP00000104250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,811,456 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,920,630 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108611   ⟹   ENSMUSP00000104251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,811,766 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,920,940 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108612   ⟹   ENSMUSP00000104252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,811,766 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,920,940 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108613   ⟹   ENSMUSP00000104253
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,546 - 69,812,212 (-)Ensembl
GRCm38.p6 Ensembl1169,916,720 - 69,921,386 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152589   ⟹   ENSMUSP00000123402
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,808,283 - 69,811,745 (-)Ensembl
GRCm38.p6 Ensembl1169,917,457 - 69,920,919 (-)Ensembl
Ensembl Acc Id: ENSMUST00000153652   ⟹   ENSMUSP00000137459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,808,008 - 69,809,130 (-)Ensembl
GRCm38.p6 Ensembl1169,917,182 - 69,918,304 (-)Ensembl
Ensembl Acc Id: ENSMUST00000164359   ⟹   ENSMUSP00000132717
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1169,807,540 - 69,811,911 (-)Ensembl
GRCm38.p6 Ensembl1169,916,714 - 69,921,085 (-)Ensembl
RefSeq Acc Id: NM_001166589   ⟹   NP_001160061
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,812,212 (-)NCBI
GRCm381169,916,712 - 69,921,386 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166590   ⟹   NP_001160062
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,811,456 (-)NCBI
GRCm381169,916,712 - 69,920,630 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166591   ⟹   NP_001160063
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,812,212 (-)NCBI
GRCm381169,916,712 - 69,921,386 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166592   ⟹   NP_001160064
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,811,773 (-)NCBI
GRCm381169,916,712 - 69,920,947 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166593   ⟹   NP_001160065
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,812,784 (-)NCBI
GRCm381169,916,712 - 69,921,958 (-)ENTREZGENE
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166594   ⟹   NP_001160066
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,811,773 (-)NCBI
GRCm381169,916,712 - 69,920,947 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166595   ⟹   NP_001160067
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,812,101 (-)NCBI
GRCm381169,916,712 - 69,921,275 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001166596   ⟹   NP_001160068
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,811,911 (-)NCBI
GRCm381169,916,712 - 69,921,085 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_181582   ⟹   NP_853613
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,538 - 69,812,212 (-)NCBI
GRCm381169,916,712 - 69,921,386 (-)NCBI
MGSCv371169,730,214 - 69,735,460 (-)RGD
Celera1177,464,600 - 77,469,965 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011249058   ⟹   XP_011247360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,546 - 69,811,956 (-)NCBI
GRCm381169,916,720 - 69,921,128 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246050   ⟹   XP_030101910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,546 - 69,812,234 (-)NCBI
GRCm381169,916,720 - 69,921,391 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030246051   ⟹   XP_030101911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,546 - 69,811,936 (-)NCBI
GRCm381169,916,720 - 69,921,110 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156739   ⟹   XP_036012632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391169,807,546 - 69,811,786 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001160061 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160062 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160064 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001160068 (Get FASTA)   NCBI Sequence Viewer  
  NP_853613 (Get FASTA)   NCBI Sequence Viewer  
  XP_011247360 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101910 (Get FASTA)   NCBI Sequence Viewer  
  XP_030101911 (Get FASTA)   NCBI Sequence Viewer  
  XP_036012632 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03889 (Get FASTA)   NCBI Sequence Viewer  
  AAH08093 (Get FASTA)   NCBI Sequence Viewer  
  AAH24899 (Get FASTA)   NCBI Sequence Viewer  
  AAN17519 (Get FASTA)   NCBI Sequence Viewer  
  AAN17520 (Get FASTA)   NCBI Sequence Viewer  
  AAN17521 (Get FASTA)   NCBI Sequence Viewer  
  AAN17522 (Get FASTA)   NCBI Sequence Viewer  
  AAN17523 (Get FASTA)   NCBI Sequence Viewer  
  AAN17524 (Get FASTA)   NCBI Sequence Viewer  
  AAN17525 (Get FASTA)   NCBI Sequence Viewer  
  AAN17526 (Get FASTA)   NCBI Sequence Viewer  
  AAN17527 (Get FASTA)   NCBI Sequence Viewer  
  AAN17528 (Get FASTA)   NCBI Sequence Viewer  
  AAN17529 (Get FASTA)   NCBI Sequence Viewer  
  AAN17530 (Get FASTA)   NCBI Sequence Viewer  
  AAN17531 (Get FASTA)   NCBI Sequence Viewer  
  AAN17532 (Get FASTA)   NCBI Sequence Viewer  
  AAN17533 (Get FASTA)   NCBI Sequence Viewer  
  AAN17534 (Get FASTA)   NCBI Sequence Viewer  
  AAN17535 (Get FASTA)   NCBI Sequence Viewer  
  AAN17536 (Get FASTA)   NCBI Sequence Viewer  
  AAN17537 (Get FASTA)   NCBI Sequence Viewer  
  AAN17538 (Get FASTA)   NCBI Sequence Viewer  
  AAN17539 (Get FASTA)   NCBI Sequence Viewer  
  BAB27532 (Get FASTA)   NCBI Sequence Viewer  
  BAB27641 (Get FASTA)   NCBI Sequence Viewer  
  BAE29039 (Get FASTA)   NCBI Sequence Viewer  
  EDL12475 (Get FASTA)   NCBI Sequence Viewer  
  EDL12476 (Get FASTA)   NCBI Sequence Viewer  
  EDL12477 (Get FASTA)   NCBI Sequence Viewer  
  EDL12478 (Get FASTA)   NCBI Sequence Viewer  
  EDL12479 (Get FASTA)   NCBI Sequence Viewer  
  EDL12480 (Get FASTA)   NCBI Sequence Viewer  
  EDL12481 (Get FASTA)   NCBI Sequence Viewer  
  EDL12482 (Get FASTA)   NCBI Sequence Viewer  
  EDL12483 (Get FASTA)   NCBI Sequence Viewer  
  EDL12484 (Get FASTA)   NCBI Sequence Viewer  
  EDL12485 (Get FASTA)   NCBI Sequence Viewer  
  EDL12486 (Get FASTA)   NCBI Sequence Viewer  
  EDL12487 (Get FASTA)   NCBI Sequence Viewer  
  EDL12488 (Get FASTA)   NCBI Sequence Viewer  
  EDL12489 (Get FASTA)   NCBI Sequence Viewer  
  EDL12490 (Get FASTA)   NCBI Sequence Viewer  
  EDL12491 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047008
  ENSMUSP00000047008.4
  ENSMUSP00000067077
  ENSMUSP00000067077.5
  ENSMUSP00000068651
  ENSMUSP00000068651.4
  ENSMUSP00000104247.2
  ENSMUSP00000104248.2
  ENSMUSP00000104249
  ENSMUSP00000104249.2
  ENSMUSP00000104250
  ENSMUSP00000104250.2
  ENSMUSP00000104251
  ENSMUSP00000104251.2
  ENSMUSP00000104252
  ENSMUSP00000104252.2
  ENSMUSP00000104253
  ENSMUSP00000104253.4
  ENSMUSP00000123402.2
  ENSMUSP00000132717
  ENSMUSP00000132717.2
  ENSMUSP00000137459.2
GenBank Protein P63242 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_853613   ⟸   NM_181582
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160065   ⟸   NM_001166593
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160061   ⟸   NM_001166589
- UniProtKB: P63242 (UniProtKB/Swiss-Prot),   Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160063   ⟸   NM_001166591
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160067   ⟸   NM_001166595
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160068   ⟸   NM_001166596
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160064   ⟸   NM_001166592
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160066   ⟸   NM_001166594
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160062   ⟸   NM_001166590
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247360   ⟸   XM_011249058
- Peptide Label: isoform X1
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101910   ⟸   XM_030246050
- Peptide Label: isoform X1
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101911   ⟸   XM_030246051
- Peptide Label: isoform X1
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000068651   ⟸   ENSMUST00000071026
Ensembl Acc Id: ENSMUSP00000132717   ⟸   ENSMUST00000164359
Ensembl Acc Id: ENSMUSP00000067077   ⟸   ENSMUST00000070996
Ensembl Acc Id: ENSMUSP00000123402   ⟸   ENSMUST00000152589
Ensembl Acc Id: ENSMUSP00000104248   ⟸   ENSMUST00000108608
Ensembl Acc Id: ENSMUSP00000104249   ⟸   ENSMUST00000108609
Ensembl Acc Id: ENSMUSP00000104247   ⟸   ENSMUST00000108607
Ensembl Acc Id: ENSMUSP00000104251   ⟸   ENSMUST00000108611
Ensembl Acc Id: ENSMUSP00000104252   ⟸   ENSMUST00000108612
Ensembl Acc Id: ENSMUSP00000104250   ⟸   ENSMUST00000108610
Ensembl Acc Id: ENSMUSP00000104253   ⟸   ENSMUST00000108613
Ensembl Acc Id: ENSMUSP00000137459   ⟸   ENSMUST00000153652
Ensembl Acc Id: ENSMUSP00000047008   ⟸   ENSMUST00000043419
RefSeq Acc Id: XP_036012632   ⟸   XM_036156739
- Peptide Label: isoform X1
- UniProtKB: Q78NR3 (UniProtKB/Swiss-Prot),   Q5NCX0 (UniProtKB/Swiss-Prot),   P63242 (UniProtKB/Swiss-Prot),   A0A0A0MQM0 (UniProtKB/TrEMBL)
Protein Domains
Translation elongation factor IF5A C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63242-F1-model_v2 AlphaFold P63242 1-154 view protein structure

Promoters
RGD ID:6820777
Promoter ID:MM_KWN:8149
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B6,   Spleen
Transcripts:OTTMUST00000013519
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,731,386 - 69,732,757 (-)MPROMDB
RGD ID:6820778
Promoter ID:MM_KWN:8150
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108607,   ENSMUST00000108608,   ENSMUST00000108609,   NM_001166589,   NM_001166590,   NM_001166591,   NM_001166592,   NM_001166593,   NM_001166594,   NM_001166595,   NM_001166596,   NM_181582,   NM_181582_EIF5A,   OTTMUST00000013518
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361169,733,921 - 69,736,002 (-)MPROMDB
RGD ID:8675252
Promoter ID:EPDNEW_M15656
Type:initiation region
Name:Eif5a_3
Description:Mus musculus eukaryotic translation initiation factor 5A , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15657  EPDNEW_M15658  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,920,544 - 69,920,604EPDNEW
RGD ID:8675254
Promoter ID:EPDNEW_M15657
Type:multiple initiation site
Name:Eif5a_2
Description:Mus musculus eukaryotic translation initiation factor 5A , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15656  EPDNEW_M15658  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,920,930 - 69,920,990EPDNEW
RGD ID:8675256
Promoter ID:EPDNEW_M15658
Type:initiation region
Name:Eif5a_1
Description:Mus musculus eukaryotic translation initiation factor 5A , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15656  EPDNEW_M15657  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381169,921,265 - 69,921,325EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106248 AgrOrtholog
Ensembl Genes ENSMUSG00000041070
  ENSMUSG00000078812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000043419 ENTREZGENE
  ENSMUST00000043419.10 UniProtKB/Swiss-Prot
  ENSMUST00000070996 ENTREZGENE
  ENSMUST00000070996.11 UniProtKB/Swiss-Prot
  ENSMUST00000071026 ENTREZGENE
  ENSMUST00000071026.10 UniProtKB/Swiss-Prot
  ENSMUST00000108607.8 UniProtKB/Swiss-Prot
  ENSMUST00000108608.8 UniProtKB/Swiss-Prot
  ENSMUST00000108609 ENTREZGENE
  ENSMUST00000108609.8 UniProtKB/Swiss-Prot
  ENSMUST00000108610 ENTREZGENE
  ENSMUST00000108610.8 UniProtKB/Swiss-Prot
  ENSMUST00000108611 ENTREZGENE
  ENSMUST00000108611.8 UniProtKB/Swiss-Prot
  ENSMUST00000108612 ENTREZGENE
  ENSMUST00000108612.8 UniProtKB/Swiss-Prot
  ENSMUST00000108613 ENTREZGENE
  ENSMUST00000108613.10 UniProtKB/Swiss-Prot
  ENSMUST00000152589.2 UniProtKB/TrEMBL
  ENSMUST00000153652.8 UniProtKB/TrEMBL
  ENSMUST00000164359 ENTREZGENE
  ENSMUST00000164359.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IF5A-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF5A-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rib_L2_dom2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trans_elong_IF5A_hypusine_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transl_elong_IF5A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Translation_prot_SH3-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:276770 UniProtKB/Swiss-Prot
MGD MGI:106248 ENTREZGENE
NCBI Gene Eif5a ENTREZGENE
PANTHER PTHR11673 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam eIF-5a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF5A-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eif5a PhenoGen
PIRSF eIF5A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE IF5A_HYPUSINE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART eIF-5a UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50104 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50249 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MQM0 ENTREZGENE, UniProtKB/TrEMBL
  IF5A1_MOUSE UniProtKB/Swiss-Prot
  J3QPS8_MOUSE UniProtKB/TrEMBL
  P63242 ENTREZGENE
  Q5NCX0 ENTREZGENE
  Q78NR3 ENTREZGENE
  Q7TMA1_MOUSE UniProtKB/TrEMBL
  Q7TMB4_MOUSE UniProtKB/TrEMBL
  Q7TME3_MOUSE UniProtKB/TrEMBL
  Q7TNN6_MOUSE UniProtKB/TrEMBL
  Q7TNN7_MOUSE UniProtKB/TrEMBL
UniProt Secondary P10159 UniProtKB/Swiss-Prot
  Q16182 UniProtKB/Swiss-Prot
  Q5NCX0 UniProtKB/Swiss-Prot
  Q78NR3 UniProtKB/Swiss-Prot
  Q9D0G2 UniProtKB/Swiss-Prot