Cldn10 (claudin 10) - Rat Genome Database

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Gene: Cldn10 (claudin 10) Mus musculus
Analyze
Symbol: Cldn10
Name: claudin 10
RGD ID: 1317559
MGI Page MGI
Description: Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly; cell adhesion; and regulation of monoatomic ion transport. Predicted to act upstream of or within monoatomic ion transport. Located in bicellular tight junction; cytoplasm; and plasma membrane. Is expressed in several structures, including alimentary system; lung; metanephros; olfactory epithelium; and submandibular gland primordium. Orthologous to human CLDN10 (claudin 10).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 6720456I16Rik; claudin 10A; claudin 10B; claudin-10; claudin-10A; Cldn; Cldn1; Cldn10a; Cldn10b; D14Ertd728; D14Ertd728e
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,025,283 - 119,111,937 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,025,320 - 119,112,901 (+)EnsemblGRCm39 Ensembl
GRCm3814118,787,871 - 118,874,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,787,908 - 118,875,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,187,093 - 119,273,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614117,701,416 - 117,788,616 (-)NCBIMGSCv36mm8
Celera14117,349,989 - 117,436,610 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Hes genes regulate size, shape and histogenesis of the nervous system by control of the timing of neural stem cell differentiation. Hatakeyama J, etal., Development 2004 Nov;131(22):5539-50. Epub 2004 Oct 20.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. claudin-18, a novel downstream target gene for the T/EBP/NKX2.1 homeodomain transcription factor, encodes lung- and stomach-specific isoforms through alternative splicing. Niimi T, etal., Mol Cell Biol 2001 Nov;21(21):7380-90.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10225958   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11923212   PMID:12466305   PMID:12477932   PMID:14698084   PMID:15366020   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16520537   PMID:16804102   PMID:16919269   PMID:17075866   PMID:18036336   PMID:18356571   PMID:18480174   PMID:18757308   PMID:19383724   PMID:19502490   PMID:19521566  
PMID:19706201   PMID:19706394   PMID:21267068   PMID:21703370   PMID:21873635   PMID:22155109   PMID:22275141   PMID:22891322   PMID:26340953   PMID:28028216   PMID:28771254   PMID:29129401  
PMID:29145406   PMID:33195274   PMID:33305192   PMID:34133940   PMID:34737342   PMID:35031570   PMID:35569195   PMID:35996827  


Genomics

Comparative Map Data
Cldn10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,025,283 - 119,111,937 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,025,320 - 119,112,901 (+)EnsemblGRCm39 Ensembl
GRCm3814118,787,871 - 118,874,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,787,908 - 118,875,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,187,093 - 119,273,747 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614117,701,416 - 117,788,616 (-)NCBIMGSCv36mm8
Celera14117,349,989 - 117,436,610 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.55NCBI
CLDN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,433,755 - 95,579,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,433,604 - 95,579,759 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,086,009 - 96,232,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,883,859 - 95,029,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 341394,883,858 - 95,029,907NCBI
Celera1376,933,662 - 77,079,797 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1376,683,603 - 76,829,764 (+)NCBIHuRef
CHM1_11396,056,017 - 96,202,145 (+)NCBICHM1_1
T2T-CHM13v2.01394,638,308 - 94,784,309 (+)NCBIT2T-CHM13v2.0
Cldn10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1599,772,662 - 99,864,437 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.015100,904,544 - 100,996,422 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01597,833,337 - 97,925,219 (+)NCBIRnor_WKY
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Celera1594,712,975 - 94,804,609 (+)NCBICelera
Cytogenetic Map15q24NCBI
Cldn10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,597,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBIChiLan1.0ChiLan1.0
CLDN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11395,634,199 - 95,779,399 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01376,728,572 - 76,755,685 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11395,763,745 - 95,909,161 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,763,980 - 95,909,161 (+)Ensemblpanpan1.1panPan2
CLDN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,098,671 - 46,225,239 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,098,933 - 46,225,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,882,250 - 46,009,455 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02246,526,400 - 46,653,623 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2246,627,780 - 46,653,447 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12246,190,438 - 46,316,829 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,223,654 - 46,350,727 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,230,094 - 46,356,645 (+)NCBIUU_Cfam_GSD_1.0
Cldn10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,723,167 - 181,745,660 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647214,207,681 - 14,308,932 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493647214,205,311 - 14,308,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,121,607 - 65,145,072 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,027,706 - 65,145,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21171,983,331 - 72,006,790 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,239,087 - 74,379,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl374,352,400 - 74,377,978 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604630,664,874 - 30,806,787 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,179,142 - 2,298,924 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,178,896 - 2,298,905 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cldn10
3381 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:574
Count of miRNA genes:336
Interacting mature miRNAs:388
Transcripts:ENSMUST00000047761, ENSMUST00000071546, ENSMUST00000100314
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
4142508Tgq25_mtriglyceride QTL 25 (mouse)Not determined85134068119134068Mouse
12792981Fbmd5_mfemoral bone mineral density 5, females only (mouse)1499838217125033054Mouse
10755523Hgb2_mhemoglobin 2 (mouse)14105884654125139656Mouse

Markers in Region
Cldn10a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14E4UniSTS
cM Map14 UniSTS
D14Ertd728e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814118,874,286 - 118,874,487UniSTSGRCm38
MGSCv3714119,273,508 - 119,273,709UniSTSGRCm37
Celera14117,436,371 - 117,436,572UniSTS
Cytogenetic Map14E4UniSTS
cM Map1460.0UniSTS
MARC_17465-17466:1022854475:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3814118,827,729 - 118,828,903UniSTSGRCm38
MGSCv3714119,226,951 - 119,228,125UniSTSGRCm37
Celera14117,389,664 - 117,390,797UniSTS
Cytogenetic Map14E4UniSTS
cM Map1460.0UniSTS
Cldn10a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14E4UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001160096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001160099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF124425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI851016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA467408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA481582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK332009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK794879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000047761   ⟹   ENSMUSP00000041616
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14119,025,320 - 119,111,936 (+)Ensembl
GRCm38.p6 Ensembl14118,787,908 - 118,874,524 (+)Ensembl
RefSeq Acc Id: ENSMUST00000071546   ⟹   ENSMUSP00000071476
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14119,025,330 - 119,111,937 (+)Ensembl
GRCm38.p6 Ensembl14118,787,918 - 118,874,525 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100314   ⟹   ENSMUSP00000097889
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl14119,092,144 - 119,112,901 (+)Ensembl
GRCm38.p6 Ensembl14118,854,732 - 118,875,489 (+)Ensembl
RefSeq Acc Id: NM_001160096   ⟹   NP_001153568
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,025,283 - 119,111,937 (+)NCBI
GRCm3814118,787,871 - 118,874,525 (+)ENTREZGENE
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160097   ⟹   NP_001153569
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,025,283 - 119,111,937 (+)NCBI
GRCm3814118,787,871 - 118,874,525 (+)ENTREZGENE
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160098   ⟹   NP_001153570
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,025,283 - 119,111,937 (+)NCBI
GRCm3814118,787,871 - 118,874,525 (+)ENTREZGENE
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001160099   ⟹   NP_001153571
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,092,362 - 119,111,937 (+)NCBI
GRCm3814118,854,950 - 118,874,525 (+)NCBI
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_021386   ⟹   NP_067361
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,092,362 - 119,111,937 (+)NCBI
GRCm3814118,854,950 - 118,874,525 (+)NCBI
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023878   ⟹   NP_076367
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3914119,025,283 - 119,111,937 (+)NCBI
GRCm3814118,787,871 - 118,874,525 (+)ENTREZGENE
MGSCv3714119,187,093 - 119,273,747 (+)RGD
Celera14117,349,989 - 117,436,610 (+)RGD
cM Map14 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_076367   ⟸   NM_023878
- Peptide Label: isoform a
- UniProtKB: Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_067361   ⟸   NM_021386
- Peptide Label: isoform b precursor
- UniProtKB: Q9CX57 (UniProtKB/Swiss-Prot),   Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153569   ⟸   NM_001160097
- Peptide Label: isoform a_i2
- UniProtKB: Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153570   ⟸   NM_001160098
- Peptide Label: isoform a_i3
- UniProtKB: Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153568   ⟸   NM_001160096
- Peptide Label: isoform a_i1
- UniProtKB: Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001153571   ⟸   NM_001160099
- Peptide Label: isoform b_i1 precursor
- UniProtKB: Q9Z0S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000071476   ⟸   ENSMUST00000071546
RefSeq Acc Id: ENSMUSP00000041616   ⟸   ENSMUST00000047761
RefSeq Acc Id: ENSMUSP00000097889   ⟸   ENSMUST00000100314

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0S6-F1-model_v2 AlphaFold Q9Z0S6 1-231 view protein structure

Promoters
RGD ID:8683206
Promoter ID:EPDNEW_M19634
Type:initiation region
Name:Cldn10_2
Description:Mus musculus claudin 10 , transcript variant b_v1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19635  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814118,787,937 - 118,787,997EPDNEW
RGD ID:8683208
Promoter ID:EPDNEW_M19635
Type:multiple initiation site
Name:Cldn10_1
Description:Mus musculus claudin 10 , transcript variant b_v1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M19634  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3814118,854,968 - 118,855,028EPDNEW
RGD ID:6824795
Promoter ID:MM_KWN:17796
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:NM_001160096,   NM_001160097,   NM_001160098,   UC007UYW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3614119,186,961 - 119,187,461 (+)MPROMDB
RGD ID:6824788
Promoter ID:MM_KWN:17798
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:NM_001160099,   OTTMUST00000056452
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3614119,254,066 - 119,254,566 (+)MPROMDB
RGD ID:6824789
Promoter ID:MM_KWN:17799
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000056474
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3614119,260,706 - 119,261,206 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913101 AgrOrtholog
Ensembl Genes ENSMUSG00000022132 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000041616 ENTREZGENE
  ENSMUSP00000041616.6 UniProtKB/Swiss-Prot
  ENSMUSP00000071476 ENTREZGENE
  ENSMUSP00000071476.7 UniProtKB/Swiss-Prot
  ENSMUSP00000097889 ENTREZGENE
  ENSMUSP00000097889.4 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000047761 ENTREZGENE
  ENSMUST00000047761.13 UniProtKB/Swiss-Prot
  ENSMUST00000071546 ENTREZGENE
  ENSMUST00000071546.14 UniProtKB/Swiss-Prot
  ENSMUST00000100314 ENTREZGENE
  ENSMUST00000100314.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Claudin10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Claudin_CS UniProtKB/Swiss-Prot
  PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:58187 UniProtKB/Swiss-Prot
MGD MGI:1913101 ENTREZGENE
NCBI Gene 58187 ENTREZGENE
PANTHER PTHR12002 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12002:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cldn10 PhenoGen
PRINTS CLAUDIN UniProtKB/Swiss-Prot
  CLAUDIN10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/Swiss-Prot
UniProt CLD10_MOUSE UniProtKB/Swiss-Prot
  Q921J6_MOUSE UniProtKB/TrEMBL
  Q9CX57 ENTREZGENE
  Q9Z0S6 ENTREZGENE
UniProt Secondary E9PVC8 UniProtKB/Swiss-Prot
  E9PWP4 UniProtKB/Swiss-Prot
  E9QMP1 UniProtKB/Swiss-Prot
  Q8VC62 UniProtKB/Swiss-Prot
  Q9CX57 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-17 Cldn10  claudin 10  Cldn10  claudin 10  Symbol and/or name change 5135510 APPROVED
2011-07-27 Cldn10  claudin 10  Cldn10a  claudin 10A  Symbol and/or name change 5135510 APPROVED