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Gene: Mrpl50 (mitochondrial ribosomal protein L50) Mus musculus

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Symbol:

Mrpl50

Name:

mitochondrial ribosomal protein L50

RGD ID:

1317531

MGI Page

MGI

Description:

Predicted to be involved in mitochondrial translation. Located in mitochondrion. Is expressed in several structures, including early conceptus; gonad; heart; liver; and metanephros. Orthologous to human MRPL50 (mitochondrial ribosomal protein L50).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

39S ribosomal protein L50, mitochondrial; AA408971; AI317351; D4Wsu125; D4Wsu125e; L50mt; large ribosomal subunit protein mL50; MRP-L50

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPL50 (mitochondrial ribosomal protein L50)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Mrpl50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrpl50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPL50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPL50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrpl50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPL50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPL50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrpl50 (mitochondrial ribosomal protein L50)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Mrpl50 (mitochondrial ribosomal protein L50)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MRPL50 (mitochondrial ribosomal protein L50)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrpl-50	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	mRpL50	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	49,512,597 - 49,521,083 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	49,512,597 - 49,521,083 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	49,525,469 - 49,533,955 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	49,533,697 - 49,542,183 (-)	NCBI		MGSCv36	mm8
Celera	4	49,540,851 - 49,549,337 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	26.54	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

fructose-1,6-bisphosphatase deficiency (ISO)

hereditary fructose intolerance syndrome (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-dexrazoxane (EXP)

(1->4)-beta-D-glucan (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (ISO)

amitrole (ISO)

Aroclor 1254 (EXP)

arsenite(3-) (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

chloropicrin (ISO)

chromium(6+) (EXP)

ciguatoxin CTX1B (EXP)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (EXP)

enzyme inhibitor (ISO)

ethanol (EXP)

ethyl methanesulfonate (ISO)

fenthion (EXP)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

fulvestrant (ISO)

ivermectin (ISO)

ketamine (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

methimazole (ISO)

methyl methanesulfonate (ISO)

nefazodone (ISO)

nickel atom (ISO)

nimesulide (ISO)

oxaliplatin (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP)

propiconazole (EXP)

quercetin (ISO)

resorcinol (ISO)

SB 431542 (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

succimer (EXP)

sulfadimethoxine (ISO)

sunitinib (ISO)

thimerosal (ISO)

thiram (ISO)

topotecan (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (NAS)

Cellular Component

cytosol (IEA,ISO)

mitochondrial inner membrane (NAS)

mitochondrial large ribosomal subunit (IBA,ISO,ISS,NAS)

mitochondrion (HDA,ISO)

Molecular Function

molecular_function (ND)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7671812	PMID:8889548	PMID:9811942	PMID:10349636	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14651853
PMID:15489334	PMID:16141072	PMID:16141073	PMID:18614015	PMID:18799693	PMID:21267068	PMID:21873635	PMID:25278503	PMID:27023846	PMID:30418981	PMID:32325033	PMID:32987154

Genomics

Comparative Map Data

Mrpl50
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	49,512,597 - 49,521,083 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	49,512,597 - 49,521,083 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	49,525,469 - 49,533,955 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	49,533,697 - 49,542,183 (-)	NCBI		MGSCv36	mm8
Celera	4	49,540,851 - 49,549,337 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	26.54	NCBI

MRPL50
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	101,387,633 - 101,398,618 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	101,387,633 - 101,398,618 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	104,149,915 - 104,160,900 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	103,192,070 - 103,200,717 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	101,231,803 - 101,240,451	NCBI
Celera	9	74,665,854 - 74,674,524 (-)	NCBI		Celera
Cytogenetic Map	9	q31.1	NCBI
HuRef	9	73,751,699 - 73,760,369 (-)	NCBI		HuRef
CHM1_1	9	104,298,663 - 104,307,332 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	113,559,613 - 113,570,593 (-)	NCBI		T2T-CHM13v2.0

Mrpl50
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	68,662,933 - 68,668,087 (-)	NCBI		GRCr8
mRatBN7.2	5	63,867,437 - 63,872,591 (-)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	5	65,798,163 - 65,803,310 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	67,617,495 - 67,622,642 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	67,586,875 - 67,592,022 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	64,784,164 - 64,789,318 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	64,784,170 - 64,789,318 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	69,275,573 - 69,280,730 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	66,261,553 - 66,266,710 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	66,267,116 - 66,271,803 (-)	NCBI
Celera	5	63,735,392 - 63,740,545 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Mrpl50
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	24,416,556 - 24,425,288 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	24,416,556 - 24,425,288 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL50
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	37,963,998 - 37,974,042 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	37,966,381 - 37,976,417 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	72,598,030 - 72,607,297 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	100,592,607 - 100,601,435 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	100,592,607 - 100,601,435 (-)	Ensembl	panpan1.1		panPan2

MRPL50
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	58,126,242 - 58,129,171 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	58,126,547 - 58,129,123 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	56,571,953 - 56,574,915 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	59,263,004 - 59,265,966 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	59,263,072 - 59,265,911 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	57,772,750 - 57,775,710 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	57,785,796 - 57,788,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	58,483,375 - 58,486,338 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	173,010,718 - 173,016,859 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	9,558,835 - 9,564,452 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	9,558,298 - 9,564,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL50
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	243,100,372 - 243,107,084 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	243,100,365 - 243,106,831 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	271,655,691 - 271,660,590 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL50
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	38,042,285 - 38,050,896 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	38,042,317 - 38,050,527 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	4,503,857 - 4,511,616 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl50
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	9,901,143 - 9,916,504 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	9,901,076 - 9,915,639 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Mrpl50
375 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	442
Count of miRNA genes:	352
Interacting mature miRNAs:	374
Transcripts:	ENSMUST00000057829
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301203	Alcp8_m	alcohol preference locus 8 (mouse)			Not determined		4	17395160	51395290	Mouse
1301586	Stheal3_m	soft tissue heal 3 (mouse)			Not determined		4	28658442	62658566	Mouse
11532714	Sluc43_m	susceptibility to lung cancer 43 (mouse)					4	46642108	123127211	Mouse
39128211	Lwq22_m	liver weight QTL 22 (mouse)					4	17892616	88982216	Mouse
25314308	Mlh1fc1_m	MLH1 foci count 1 (mouse)					4	48500000	76918237	Mouse
1301786	Bpq3_m	blood pressure QTL 3 (mouse)			Not determined		4	42402240	76402381	Mouse
4141555	Nbwa2_m	NZB and NZW autoimmunity 2 (mouse)			Not determined		4	17892515	51892635	Mouse
10412178	Habiir2_m	hyperoxic acute lung injury imprinted region 2 (mouse)			Not determined		4	39452126	63283678	Mouse
1300574	Im2_m	immunoregulatory 2 (mouse)			Not determined		4	28077682	62077816	Mouse
4142318	Lyr2_m	lymphoma resistance 2 (mouse)			Not determined			14010457	63283678	Mouse
1301697	Sluc18_m	susceptibility to lung cancer 18 (mouse)			Not determined		4	22373448	56373612	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138342753	Mouse
1357453	Kidq4_m	kidney weight QTL 4 (mouse)			Not determined		4	17892616	88982216	Mouse
1558794	Agnm1_m	autoimmune glomerulonephritis in MRL 1 (mouse)			Not determined		4	46332646	55755867	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1357877	Synch1_m	synechia 1 (mouse)			Not determined		4	28709925	62710107	Mouse
10449022	Aanq1_m	aristolochic acid nephrotoxicity QTL 1 (mouse)					4	46603826	80603826	Mouse
1300977	Mopkd1_m	modifier of polycystic kidney disease progression 1 (mouse)			Not determined		4	36550839	70550967	Mouse
1301237	Alcp7_m	alcohol preference locus 7 (mouse)			Not determined		4	17395160	51395290	Mouse
1301941	Mmtg1_m	modifier of mammary tumor growth 1 (mouse)			Not determined		4	45658442	83099157	Mouse
4141911	W6q15_m	weight 6 weeks QTL 15 (mouse)			Not determined			17892616	88982216	Mouse
1302075	Bdln6_m	body length 6 (mouse)			Not determined		4	22373448	56373612	Mouse
12879977	Bod2_m	bone length and organs 2 (mouse)					4	46283531	80283678	Mouse
1301437	Scon1_m	sucrose consumption 1 (mouse)			Not determined		4	22373448	56373612	Mouse
10043880	Adip23_m	adiposity 23 (mouse)			Not determined		4	46283531	80283678	Mouse
1300769	Pcyts2_m	plasmacytoma susceptibility 2 (mouse)			Not determined		4	22111944	56112145	Mouse
1301792	Hdlq10_m	HDL QTL 10 (mouse)			Not determined		4	35859707	69859853	Mouse
1558948	Ath8_m	atherosclerosis 8 (mouse)			Not determined		4	45658442	105156995	Mouse
1301990	Arvm1_m	autoimmune renal vasculitis 1 (mouse)			Not determined		4	29332646	63332776	Mouse
1300966	Pabr2_m	plasma apolipoprotein B (human) regulator 2 (mouse)			Not determined		4	46332646	105801860	Mouse
1302116	Bbaa1_m	B.burgdorferi-associated arthritis 1 (mouse)			Not determined		4	38250930	72251078	Mouse
1302058	Hrtfm3_m	heart failure modifier 3 (mouse)			Not determined		4	22111944	56112145	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
27226724	Tibw2_m	tibia width 2, proximal, 10 week (mouse)					4	43000000	108357197	Mouse
13432176	Actres1_m	activity response to ethanol/saline 1 (mouse)					4	47587128	50387128	Mouse
13432179	Acq1_m	activity chamber QTL 1 (mouse)					4	47087128	50187128	Mouse
11532688	Mh_m	modifier of hemostasis (mouse)					4	48304775	82304775	Mouse

Markers in Region

AI317351

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	49,513,018 - 49,513,126	UniSTS	GRCm38
MGSCv37	4	49,525,890 - 49,525,998	UniSTS	GRCm37
Celera	4	49,541,272 - 49,541,380	UniSTS
Cytogenetic Map	4	B1	UniSTS
cM Map	4	24.0	UniSTS
Whitehead/MRC_RH	4	793.61	UniSTS

RH124800

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	49,512,710 - 49,512,790	UniSTS	GRCm38
MGSCv37	4	49,525,582 - 49,525,662	UniSTS	GRCm37
Celera	4	49,540,964 - 49,541,044	UniSTS
Cytogenetic Map	4	B1	UniSTS
cM Map	4	24.0	UniSTS

RH125648

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	49,514,022 - 49,514,271	UniSTS	GRCm38
MGSCv37	4	49,526,894 - 49,527,143	UniSTS	GRCm37
Celera	4	49,542,276 - 49,542,525	UniSTS
Cytogenetic Map	4	B1	UniSTS
cM Map	4	24.0	UniSTS
Whitehead/MRC_RH	4	793.61	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_178603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK002646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK002686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK007405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK031229	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK049421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL772310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000057829 ⟹ ENSMUSP00000062476

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl
GRCm38.p6 Ensembl	4	49,512,596 - 49,521,093 (-)	Ensembl

RefSeq Acc Id:

NM_178603 ⟹ NP_848718

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	49,512,597 - 49,521,083 (-)	NCBI
GRCm38	4	49,512,597 - 49,521,083 (-)	ENTREZGENE
MGSCv37	4	49,525,469 - 49,533,955 (-)	RGD
Celera	4	49,540,851 - 49,549,337 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

CGTCTGGCGCTCTTGGGTTGCTTGTCGAGAATGGCGGCGCTGATCGTGTCTCGGTTAGCAAGAA
GAGGCTGGCTGTGGAAGCTTCCCTTGGCAACACGTAGAGAATTTTGGTCTCGATCCAGGAAGGA
GAAGGAGCCAGTTGTGGCAGAGACAGTGGAAGAAGTGAAAAAAGAACCTGTTTTGGTGTGTCCA
CCCTTACGAAGCCGAGCATACACACCGCCCAGTGATCTCCAGAGTCGCTTGGAATCTCATATTA
AAGAAGTTCTTGGTTCATCTCTTCCTAATAACTGGCAAGATATCTCCCTGGATGATGGACATAT
GAAGTTCAGACTCTTAGCAGGCTTAGCTGATGGCTTAGGCCATGCGGTCCCTAACTCCAGGCTT
CACCAAATGTGCAGGGTCAGAGATGTTCTTGATTTCTATAATGTTCCTGTTCAAGACAAATCTA
AATTTGATGAACTCGTTGCTAGTAATTTACCTCCCAATTTGAAAATCAGTTGGAGTTACTGAGC
AGTCTGGTCAGAGACCACGTTGGGGGTCATTCATTCTTATTCTCACTAGCGTGACTGAAAAGTA
CCAGAACTTTTCTCAAAACTTCAATTTTGTATAATTTTTTTTTTTGCTCCTTGTAGAAGAGCAC
ATCTCCCCTCCCCCAAAGGAGAATCAACAAAGAAAACGTTTTCACATTTGCTAAAGCTATTTTT
CCCCCAATAAAATCAAGTCTTGATAACTTATGAAAACTTTGTTATTCCAAGGTATATAGTCAGG
GTTGTTGGGAGGAACAGAAGTGACAGCATGCAAACATAGTTAAAGGAGGTTTATGATGTTAGCT
CACATTAGGATCTGGGCACTTCATCAATGGCTGTGTCACCCTTCACGAGGCTGACTGTCTCAGC
AGTACCAAGCTGTTGCTGAGAGCCTGGGGGATTCTTTGAAAAGCCTACTGACCTTCAATTCATG
CTGGCCGCCTGAAGAAGCTGGTTCTAATATGGACGAAAAGATGCAGCAATGGCAGGAACAAGAT
GGATGTACTTGTCAGTCGAGTGAAGGCAAGCAGGTGGAAGGAAAATCAGACCTTCCTTCTGCAT
GGGTTCTGCCCACATTTACTGTGCACTTCCCTCTCGAGAGACAATCTGCTTAAGAAAATCCCTT
AGTGGAGCGGCCAGCTGCTTGTCTTTTAGTTGACTCCAGATCAGTCAGTGACAACCAAGATTAA
CCATAACACAAAAATACTAAGTACCTCGGGCTTCAGATAAGAGGCCATTGCAAAGATGTTTTCT
TTGCCTGTCATACGGTTAAAGTAGTAGTTTCAATAAAATGTTCTTATTAAGGCTCAAAGATATG
GGGCTATTATATATACAAATAAGAAAATGTATAGTGAGAATTTTGGTGTCTTAAAAAGAAACAC
AGAAATACTGTAGGTGTGGAATCTGGGGCTGCTTCAGACTTGTCCACAGCAGCTGACTAATTTG
CCTTGTGCTCTAGCAGGGGCTTGATTCTTCCAGCTGCAGATGGTTTCTGTGATTGTGTGAGGTT
TTGAATTCTGGGGGTTCTTCAGAGGATAAATGTTAGGGCTCTAAGAGGCGCTGAGTTGTTGATT
GTTTGCTGTTGGTTGTGATTTGTTAAGCACTCGTGAACAAAGAAGAAACAACAAGAAGAAATTA
GATGTCCTGATGCTTGCCCCAAGGAACTTGATGCCCCTAATGGGCAGAAAGTCTAATAGTAACA
TTATCCCCTTTCCCCTCTATCCTTTTTTCTGTGCTATCTAGTTTTAGGGGGTTGAAGGAGTAGA
AGAAGAGGAGTGGAGAAGGGCGGAAGAAAAAGAACCCACAAAGTAGCCAAAAGACCAGCTACCA
AACAAAATGTATTAGATGTCTGAAGGAAACGTGAACATCTGGTGCACATTATAGAAAGTTCCAC
TGTGTTTTACTCCATAAGTAAAGGTGGAAGAAAGGGCAACGTGTTCTGGGTTCATCTCTTGGGA
CTAACGGAGATTTGTTAAAGGGTAATGACTTTCTTTCTGAATGAAATTCACTTTTATGTATCAC
TTTATTATTTCTTTTAAAATGAATATTAGAAATAAAAACAAAATGTCTAGCAGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_848718	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB22257	(Get FASTA)	NCBI Sequence Viewer
	BAB22283	(Get FASTA)	NCBI Sequence Viewer
	BAB25017	(Get FASTA)	NCBI Sequence Viewer
	BAC27309	(Get FASTA)	NCBI Sequence Viewer
	BAC33745	(Get FASTA)	NCBI Sequence Viewer
	BAC35958	(Get FASTA)	NCBI Sequence Viewer
	EDL02318	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000062476
	ENSMUSP00000062476.4
GenBank Protein	Q8VDT9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_848718 ⟸ NM_178603
- UniProtKB:	Q8VDT9 (UniProtKB/Swiss-Prot), Q9CR44 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAALIVSRLARRGWLWKLPLATRREFWSRSRKEKEPVVAETVEEVKKEPVLVCPPLRSRAYTPP SDLQSRLESHIKEVLGSSLPNNWQDISLDDGHMKFRLLAGLADGLGHAVPNSRLHQMCRVRDVL DFYNVPVQDKSKFDELVASNLPPNLKISWSY hide sequence

Ensembl Acc Id:

ENSMUSP00000062476 ⟸ ENSMUST00000057829

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VDT9-F1-model_v2	AlphaFold	Q8VDT9	1-159	view protein structure

Promoters

RGD ID:

6883416

Promoter ID:

EPDNEW_M5159

Type:

multiple initiation site

Name:

Mrpl50_1

Description:

Mus musculus mitochondrial ribosomal protein L50 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	49,521,075 - 49,521,135	EPDNEW

RGD ID:

6835700

Promoter ID:

MM_KWN:37600

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000042964, NM_145547, OTTMUST00000018941

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	49,533,716 - 49,534,216 (-)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:107329	AgrOrtholog
Ensembl Genes	ENSMUSG00000044018	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000057829	ENTREZGENE
	ENSMUST00000057829.4	UniProtKB/Swiss-Prot
InterPro	Ribosomal_L50_mt	UniProtKB/Swiss-Prot
KEGG Report	mmu:28028	UniProtKB/Swiss-Prot
MGD	MGI:107329	ENTREZGENE
NCBI Gene	28028	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L50, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	PTHR31542	UniProtKB/Swiss-Prot
Pfam	Ribosomal_L50	UniProtKB/Swiss-Prot
PhenoGen	Mrpl50	PhenoGen
UniProt	Q8VDT9	ENTREZGENE
	Q9CR44	ENTREZGENE
	RM50_MOUSE	UniProtKB/Swiss-Prot
UniProt Secondary	Q9CR44	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar