WBP11 (WW domain binding protein 11) - Rat Genome Database

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Gene: WBP11 (WW domain binding protein 11) Homo sapiens
Analyze
Symbol: WBP11
Name: WW domain binding protein 11
RGD ID: 1317378
HGNC Page HGNC:16461
Description: Enables WW domain binding activity. Predicted to be involved in mRNA processing and rRNA processing. Predicted to act upstream of or within RNA splicing. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: BUG13; CFAP90; DKFZp779M1063; FAP90; Npw38-binding protein NpwBP; NPWBP; PPP1R165; SH3 domain-binding protein SNP70; SIPP1; splicing factor that interacts with PQBP-1 and PP1; splicing factor, PQBP1 and PP1 interacting; VCTERL; VCTRL; WBP-11; WW domain-binding protein 11
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: WBP11P1   WBP11P2   WBP11P3  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,784,582 - 14,803,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,784,582 - 14,803,486 (-)EnsemblGRCh38hg38GRCh38
GRCh371214,937,516 - 14,956,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,830,679 - 14,847,668 (-)NCBINCBI36Build 36hg18NCBI36
Build 341214,830,680 - 14,847,668NCBI
Celera1220,084,400 - 20,101,388 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,708,868 - 14,725,858 (-)NCBIHuRef
CHM1_11214,905,505 - 14,922,494 (-)NCBICHM1_1
T2T-CHM13v2.01214,661,939 - 14,680,843 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10593949   PMID:10744724   PMID:11054566   PMID:11375989   PMID:12477932   PMID:14640981   PMID:15489334   PMID:15635413   PMID:16000308   PMID:16055720   PMID:16120600   PMID:16162498  
PMID:16169070   PMID:16189514   PMID:16713569   PMID:17081983   PMID:17332742   PMID:18654987   PMID:19592703   PMID:21873635   PMID:21988832   PMID:22321011   PMID:22365833   PMID:22658674  
PMID:22681889   PMID:22939629   PMID:23080069   PMID:24136289   PMID:24163370   PMID:24457600   PMID:24711643   PMID:24912190   PMID:24999758   PMID:25315684   PMID:25416956   PMID:25921289  
PMID:26186194   PMID:26344197   PMID:26496610   PMID:27107014   PMID:27173435   PMID:27314904   PMID:27456546   PMID:27609421   PMID:27634302   PMID:27812135   PMID:27880917   PMID:28077445  
PMID:28302793   PMID:28514442   PMID:28515276   PMID:28561026   PMID:28838205   PMID:28977666   PMID:29128334   PMID:29298432   PMID:29395067   PMID:29509190   PMID:30110629   PMID:30209976  
PMID:30344098   PMID:30884312   PMID:30890647   PMID:31006538   PMID:31405213   PMID:31536960   PMID:31623628   PMID:32203420   PMID:32296183   PMID:32416067   PMID:32538781   PMID:32687490  
PMID:32780723   PMID:33276377   PMID:33742100   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34133714   PMID:34189442   PMID:34316702   PMID:34349018   PMID:34373451   PMID:34597346  
PMID:34672954   PMID:34795231   PMID:35013218   PMID:35140242   PMID:35271311   PMID:35439318   PMID:35575683   PMID:35831314   PMID:35914814   PMID:35944360   PMID:35987950   PMID:36215168  
PMID:36244648   PMID:36373674   PMID:36424410   PMID:37689310   PMID:37827155   PMID:38697112  


Genomics

Comparative Map Data
WBP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,784,582 - 14,803,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,784,582 - 14,803,486 (-)EnsemblGRCh38hg38GRCh38
GRCh371214,937,516 - 14,956,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,830,679 - 14,847,668 (-)NCBINCBI36Build 36hg18NCBI36
Build 341214,830,680 - 14,847,668NCBI
Celera1220,084,400 - 20,101,388 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,708,868 - 14,725,858 (-)NCBIHuRef
CHM1_11214,905,505 - 14,922,494 (-)NCBICHM1_1
T2T-CHM13v2.01214,661,939 - 14,680,843 (-)NCBIT2T-CHM13v2.0
Wbp11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,790,652 - 136,805,214 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,790,652 - 136,805,231 (-)EnsemblGRCm39 Ensembl
GRCm386136,813,654 - 136,828,216 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,813,654 - 136,828,233 (-)EnsemblGRCm38mm10GRCm38
MGSCv376136,762,175 - 136,776,737 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,777,852 - 136,792,324 (-)NCBIMGSCv36mm8
Celera6139,822,906 - 139,837,714 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
Wbp11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,412,187 - 171,425,634 (-)NCBIGRCr8
mRatBN7.24169,680,984 - 169,694,431 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,680,983 - 169,694,443 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4175,975,711 - 175,989,125 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,757,453 - 171,770,900 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,381,374 - 170,394,788 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,772,166 - 170,785,613 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,772,163 - 170,810,080 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,154,227 - 170,186,942 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04234,414,445 - 234,427,903 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,823,936 - 173,837,308 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14174,069,061 - 174,082,432 (-)NCBI
Celera4158,264,513 - 158,277,960 (-)NCBICelera
Cytogenetic Map4q43NCBI
Wbp11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541311,533,303 - 11,549,067 (-)NCBIChiLan1.0ChiLan1.0
WBP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,238,017 - 20,257,509 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,234,778 - 20,252,538 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,791,495 - 14,809,460 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,189,323 - 15,206,377 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,189,323 - 15,206,377 (-)Ensemblpanpan1.1panPan2
WBP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,805,590 - 31,822,602 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,805,590 - 31,821,147 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,626,424 - 14,643,484 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02732,114,165 - 32,129,069 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12732,001,615 - 32,018,608 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,960,078 - 31,977,326 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,358,481 - 14,375,518 (-)NCBIUU_Cfam_GSD_1.0
Wbp11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,945,542 - 92,959,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365872,673,206 - 2,687,298 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WBP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1557,749,948 - 57,766,788 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2561,196,695 - 61,205,103 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WBP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,686,047 - 14,704,172 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,686,636 - 14,704,127 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,606,064 - 20,624,173 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wbp11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475223,220,021 - 23,235,739 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WBP11
33 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12p13.33-11.22(chr12:121055-28415184)x1 copy number loss See cases [RCV000052776] Chr12:121055..28415184 [GRCh38]
Chr12:282465..28568117 [GRCh37]
Chr12:100482..28459384 [NCBI36]
Chr12:12p13.33-11.22
pathogenic
GRCh38/hg38 12p13.2-12.3(chr12:12388842-15540422)x1 copy number loss See cases [RCV000052780] Chr12:12388842..15540422 [GRCh38]
Chr12:12541776..15693356 [GRCh37]
Chr12:12433043..15584623 [NCBI36]
Chr12:12p13.2-12.3
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3 copy number gain See cases [RCV000053660] Chr12:77187..34380176 [GRCh38]
Chr12:282465..34533111 [GRCh37]
Chr12:56614..34424378 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
GRCh38/hg38 12p13.33-12.1(chr12:80412-25470329)x3 copy number gain See cases [RCV000053662] Chr12:80412..25470329 [GRCh38]
Chr12:282465..25623263 [GRCh37]
Chr12:59839..25514530 [NCBI36]
Chr12:12p13.33-12.1
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4 copy number gain See cases [RCV000053666] Chr12:212976..33926913 [GRCh38]
Chr12:322142..34079848 [GRCh37]
Chr12:192403..33971115 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
NM_016312.2(WBP11):c.1177C>T (p.Pro393Ser) single nucleotide variant Malignant melanoma [RCV000069913] Chr12:14790588 [GRCh38]
Chr12:14943522 [GRCh37]
Chr12:14834789 [NCBI36]
Chr12:12p12.3
not provided
NM_001013698.2(SMCO3):c.182C>T (p.Thr61Ile) single nucleotide variant Malignant melanoma [RCV000069914] Chr12:14806499 [GRCh38]
Chr12:14959433 [GRCh37]
Chr12:14850700 [NCBI36]
Chr12:12p12.3
not provided
GRCh38/hg38 12p13.2-12.3(chr12:12363649-15280588)x1 copy number loss See cases [RCV000135331] Chr12:12363649..15280588 [GRCh38]
Chr12:12514722..15433522 [GRCh37]
Chr12:12405989..15324789 [NCBI36]
Chr12:12p13.2-12.3
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3 copy number gain See cases [RCV000136611] Chr12:121255..34603274 [GRCh38]
Chr12:282465..34756209 [GRCh37]
Chr12:100682..34647476 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
GRCh38/hg38 12p13.33-12.3(chr12:2871741-14987348)x3 copy number gain See cases [RCV000137694] Chr12:2871741..14987348 [GRCh38]
Chr12:2980907..15140282 [GRCh37]
Chr12:2851168..15031549 [NCBI36]
Chr12:12p13.33-12.3
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3 copy number gain See cases [RCV000139052] Chr12:121271..34603261 [GRCh38]
Chr12:282465..34756196 [GRCh37]
Chr12:100698..34647463 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4 copy number gain See cases [RCV000139787] Chr12:54427..34608071 [GRCh38]
Chr12:282465..34761006 [GRCh37]
Chr12:33854..34652273 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12p13.33-12.2(chr12:1258274-20657577)x3 copy number gain See cases [RCV000141905] Chr12:1258274..20657577 [GRCh38]
Chr12:1367440..20810511 [GRCh37]
Chr12:1237701..20701778 [NCBI36]
Chr12:12p13.33-12.2
pathogenic
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4 copy number gain See cases [RCV000142149] Chr12:64620..34682902 [GRCh38]
Chr12:173786..34835837 [GRCh37]
Chr12:44047..34727104 [NCBI36]
Chr12:12p13.33-11.1
pathogenic
GRCh38/hg38 12p13.2-12.3(chr12:11121039-15908154)x1 copy number loss See cases [RCV000142882] Chr12:11121039..15908154 [GRCh38]
Chr12:11273638..16061088 [GRCh37]
Chr12:11164905..15952355 [NCBI36]
Chr12:12p13.2-12.3
likely pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:148034-34178799)x4 copy number gain See cases [RCV000240164] Chr12:148034..34178799 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
chr12:10074776-18800953 complex variant complex Breast ductal adenocarcinoma [RCV000207105] Chr12:10074776..18800953 [GRCh37]
Chr12:12p13.31-12.3
uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:89061-34178799)x3 copy number gain See cases [RCV000240487] Chr12:89061..34178799 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)x3 copy number gain See cases [RCV000449191] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11
pathogenic
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865)x3 copy number gain See cases [RCV000449287] Chr12:173786..25286865 [GRCh37]
Chr12:12p13.33-12.1
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain See cases [RCV000447551] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-12.2(chr12:173786-20026080)x3 copy number gain See cases [RCV000446050] Chr12:173786..20026080 [GRCh37]
Chr12:12p13.33-12.2
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:189578-34756150) copy number gain See cases [RCV000446017] Chr12:189578..34756150 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:565369-34835837)x3 copy number gain See cases [RCV000511580] Chr12:565369..34835837 [GRCh37]
Chr12:12p13.33-11.1
likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-11.22(chr12:173786-28219229)x3 copy number gain See cases [RCV000510961] Chr12:173786..28219229 [GRCh37]
Chr12:12p13.33-11.22
pathogenic
NM_016312.3(WBP11):c.572C>T (p.Pro191Leu) single nucleotide variant Inborn genetic diseases [RCV003277128] Chr12:14794686 [GRCh38]
Chr12:14947620 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1787C>T (p.Pro596Leu) single nucleotide variant Inborn genetic diseases [RCV003243878] Chr12:14787204 [GRCh38]
Chr12:14940138 [GRCh37]
Chr12:12p12.3
uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 copy number gain not provided [RCV000683479] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x2,3 copy number gain not provided [RCV000683478] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869107)x3 copy number gain not provided [RCV000683480] Chr12:173786..37869107 [GRCh37]
Chr12:12p13.33-q11
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-11.21(chr12:191619-31733044)x3 copy number gain not provided [RCV000750245] Chr12:191619..31733044 [GRCh37]
Chr12:12p13.33-11.21
pathogenic
GRCh37/hg19 12p13.33-12.3(chr12:189216-15001420) copy number gain not provided [RCV000767817] Chr12:189216..15001420 [GRCh37]
Chr12:12p13.33-12.3
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34496628)x3 copy number gain not provided [RCV000847209] Chr12:173786..34496628 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.2-12.3(chr12:11737824-16780886)x1 copy number loss not provided [RCV001006482] Chr12:11737824..16780886 [GRCh37]
Chr12:12p13.2-12.3
pathogenic
NM_016312.3(WBP11):c.612del (p.Gly205fs) deletion Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312231]|WBP11 spliceosomopathy [RCV001199834] Chr12:14794646 [GRCh38]
Chr12:14947580 [GRCh37]
Chr12:12p12.3
pathogenic|likely pathogenic
NM_016312.3(WBP11):c.484C>T (p.Gln162Ter) single nucleotide variant WBP11 spliceosomopathy [RCV001199831] Chr12:14795008 [GRCh38]
Chr12:14947942 [GRCh37]
Chr12:12p12.3
pathogenic
NM_016312.3(WBP11):c.280C>T (p.Arg94Ter) single nucleotide variant Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312232]|WBP11 spliceosomopathy [RCV001199830] Chr12:14796914 [GRCh38]
Chr12:14949848 [GRCh37]
Chr12:12p12.3
pathogenic|likely pathogenic
NM_016312.3(WBP11):c.937A>G (p.Met313Val) single nucleotide variant Inborn genetic diseases [RCV003290514] Chr12:14791247 [GRCh38]
Chr12:14944181 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1559dup (p.Gly521fs) duplication Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003339526]|WBP11 spliceosomopathy [RCV001199832] Chr12:14787431..14787432 [GRCh38]
Chr12:14940365..14940366 [GRCh37]
Chr12:12p12.3
pathogenic
NM_016312.3(WBP11):c.688C>T (p.Arg230Ter) single nucleotide variant Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312230]|WBP11 spliceosomopathy [RCV001199833] Chr12:14794570 [GRCh38]
Chr12:14947504 [GRCh37]
Chr12:12p12.3
pathogenic
GRCh37/hg19 12p13.33-q11(chr12:274676-37869301)x4 copy number gain not provided [RCV001006470] Chr12:274676..37869301 [GRCh37]
Chr12:12p13.33-q11
pathogenic
NM_016312.3(WBP11):c.169A>G (p.Met57Val) single nucleotide variant WBP11 spliceosomopathy [RCV001199835] Chr12:14799656 [GRCh38]
Chr12:14952590 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.387+11dup duplication not provided [RCV001639627] Chr12:14796786..14796787 [GRCh38]
Chr12:14949720..14949721 [GRCh37]
Chr12:12p12.3
benign
NM_016312.3(WBP11):c.1792A>G (p.Arg598Gly) single nucleotide variant Inborn genetic diseases [RCV004683534] Chr12:14787199 [GRCh38]
Chr12:14940133 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.331G>T (p.Glu111Ter) single nucleotide variant Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001754553] Chr12:14796863 [GRCh38]
Chr12:14949797 [GRCh37]
Chr12:12p12.3
likely pathogenic
NM_016312.3(WBP11):c.585del (p.Gly196fs) deletion Inborn genetic diseases [RCV004683533] Chr12:14794673 [GRCh38]
Chr12:14947607 [GRCh37]
Chr12:12p12.3
pathogenic
NM_016312.3(WBP11):c.1592C>G (p.Pro531Arg) single nucleotide variant Inborn genetic diseases [RCV004683536] Chr12:14787399 [GRCh38]
Chr12:14940333 [GRCh37]
Chr12:12p12.3
uncertain significance
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865) copy number gain not specified [RCV002052955] Chr12:173786..25286865 [GRCh37]
Chr12:12p13.33-12.1
pathogenic
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837) copy number gain not specified [RCV002052957] Chr12:173786..34835837 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301) copy number gain not specified [RCV002052958] Chr12:173786..37869301 [GRCh37]
Chr12:12p13.33-q11
pathogenic
NC_000012.11:g.(?_11803062)_(15835885_?)dup duplication Intellectual disability, autosomal dominant 6 [RCV001931714]|not provided [RCV001946435] Chr12:11803062..15835885 [GRCh37]
Chr12:12p13.2-12.3
uncertain significance|no classifications from unflagged records
NC_000012.11:g.(?_14849146)_(15669910_?)dup duplication not provided [RCV001978819] Chr12:14849146..15669910 [GRCh37]
Chr12:12p12.3
uncertain significance
GRCh37/hg19 12p13.2-12.1(chr12:10853887-24103810)x1 copy number loss not provided [RCV002292878] Chr12:10853887..24103810 [GRCh37]
Chr12:12p13.2-12.1
pathogenic
NM_016312.3(WBP11):c.1505C>T (p.Pro502Leu) single nucleotide variant not provided [RCV002293845] Chr12:14787486 [GRCh38]
Chr12:14940420 [GRCh37]
Chr12:12p12.3
uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:176047-34179852)x4 copy number gain Pallister-Killian syndrome [RCV003154827] Chr12:176047..34179852 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
NM_016312.3(WBP11):c.431T>C (p.Met144Thr) single nucleotide variant Inborn genetic diseases [RCV002970501] Chr12:14795061 [GRCh38]
Chr12:14947995 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1802_1803del (p.Glu601fs) microsatellite Inborn genetic diseases [RCV002707841] Chr12:14787188..14787189 [GRCh38]
Chr12:14940122..14940123 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1104G>C (p.Lys368Asn) single nucleotide variant Inborn genetic diseases [RCV002845197] Chr12:14790661 [GRCh38]
Chr12:14943595 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.925C>T (p.Arg309Trp) single nucleotide variant Inborn genetic diseases [RCV002983865] Chr12:14791259 [GRCh38]
Chr12:14944193 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1039C>T (p.Arg347Trp) single nucleotide variant Inborn genetic diseases [RCV002873767] Chr12:14790726 [GRCh38]
Chr12:14943660 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1181C>T (p.Pro394Leu) single nucleotide variant Inborn genetic diseases [RCV002701572] Chr12:14790584 [GRCh38]
Chr12:14943518 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1148C>T (p.Thr383Ile) single nucleotide variant Inborn genetic diseases [RCV002744351]|not provided [RCV003395686] Chr12:14790617 [GRCh38]
Chr12:14943551 [GRCh37]
Chr12:12p12.3
benign|likely benign|uncertain significance
NM_016312.3(WBP11):c.742G>A (p.Asp248Asn) single nucleotide variant Inborn genetic diseases [RCV002965662] Chr12:14793902 [GRCh38]
Chr12:14946836 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.556C>G (p.Leu186Val) single nucleotide variant Inborn genetic diseases [RCV002989617] Chr12:14794702 [GRCh38]
Chr12:14947636 [GRCh37]
Chr12:12p12.3
likely benign
NM_016312.3(WBP11):c.509C>T (p.Thr170Ile) single nucleotide variant Inborn genetic diseases [RCV002718474] Chr12:14794983 [GRCh38]
Chr12:14947917 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1540C>A (p.Pro514Thr) single nucleotide variant Inborn genetic diseases [RCV002935022] Chr12:14787451 [GRCh38]
Chr12:14940385 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.99C>G (p.Asn33Lys) single nucleotide variant not provided [RCV003225420] Chr12:14799726 [GRCh38]
Chr12:14952660 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.758G>A (p.Ser253Asn) single nucleotide variant Inborn genetic diseases [RCV003181354] Chr12:14793886 [GRCh38]
Chr12:14946820 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.386A>G (p.Lys129Arg) single nucleotide variant not provided [RCV003223958] Chr12:14796808 [GRCh38]
Chr12:14949742 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1237_1251del (p.Leu413_Pro417del) deletion not provided [RCV003323256] Chr12:14790514..14790528 [GRCh38]
Chr12:14943448..14943462 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.280C>G (p.Arg94Gly) single nucleotide variant not provided [RCV003318865] Chr12:14796914 [GRCh38]
Chr12:14949848 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1298G>T (p.Gly433Val) single nucleotide variant not provided [RCV003319762] Chr12:14790467 [GRCh38]
Chr12:14943401 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.972G>A (p.Met324Ile) single nucleotide variant not provided [RCV003319091] Chr12:14791212 [GRCh38]
Chr12:14944146 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1493G>T (p.Gly498Val) single nucleotide variant Inborn genetic diseases [RCV003381965] Chr12:14787498 [GRCh38]
Chr12:14940432 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1526C>A (p.Pro509Gln) single nucleotide variant Inborn genetic diseases [RCV003364647] Chr12:14787465 [GRCh38]
Chr12:14940399 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1521dup (p.Arg508fs) duplication Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003332931] Chr12:14787469..14787470 [GRCh38]
Chr12:14940403..14940404 [GRCh37]
Chr12:12p12.3
pathogenic
NM_016312.3(WBP11):c.871C>T (p.Arg291Cys) single nucleotide variant Inborn genetic diseases [RCV003349568] Chr12:14793773 [GRCh38]
Chr12:14946707 [GRCh37]
Chr12:12p12.3
uncertain significance
Single allele duplication not provided [RCV003448692] Chr12:188053..34856694 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
NM_016312.3(WBP11):c.1397G>A (p.Arg466Gln) single nucleotide variant not provided [RCV003396258] Chr12:14789046 [GRCh38]
Chr12:14941980 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.251dup (p.Leu85fs) duplication Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003388640] Chr12:14796942..14796943 [GRCh38]
Chr12:14949876..14949877 [GRCh37]
Chr12:12p12.3
likely pathogenic
NM_016312.3(WBP11):c.191-8_191-3del deletion WBP11-related disorder [RCV003429070] Chr12:14797006..14797011 [GRCh38]
Chr12:14949940..14949945 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1213C>T (p.Pro405Ser) single nucleotide variant not provided [RCV003390184] Chr12:14790552 [GRCh38]
Chr12:14943486 [GRCh37]
Chr12:12p12.3
likely benign
NM_016312.3(WBP11):c.1192C>G (p.Pro398Ala) single nucleotide variant WBP11-related disorder [RCV003410533] Chr12:14790573 [GRCh38]
Chr12:14943507 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1203G>C (p.Gln401His) single nucleotide variant not provided [RCV003390185] Chr12:14790562 [GRCh38]
Chr12:14943496 [GRCh37]
Chr12:12p12.3
uncertain significance
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835641)x3 copy number gain not specified [RCV003986979] Chr12:173786..34835641 [GRCh37]
Chr12:12p13.33-11.1
pathogenic
NM_016312.3(WBP11):c.1396C>T (p.Arg466Ter) single nucleotide variant not provided [RCV003887682] Chr12:14789047 [GRCh38]
Chr12:14941981 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.533G>A (p.Arg178Gln) single nucleotide variant Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV004555993] Chr12:14794725 [GRCh38]
Chr12:14947659 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.734ATG[3] (p.Asp248del) microsatellite not provided [RCV004585839] Chr12:14793899..14793901 [GRCh38]
Chr12:14946833..14946835 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1093G>A (p.Glu365Lys) single nucleotide variant Inborn genetic diseases [RCV004478045] Chr12:14790672 [GRCh38]
Chr12:14943606 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1352G>A (p.Arg451Gln) single nucleotide variant Inborn genetic diseases [RCV004478046] Chr12:14789091 [GRCh38]
Chr12:14942025 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1541C>A (p.Pro514His) single nucleotide variant Inborn genetic diseases [RCV004478047] Chr12:14787450 [GRCh38]
Chr12:14940384 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1716G>C (p.Lys572Asn) single nucleotide variant Inborn genetic diseases [RCV004478048] Chr12:14787275 [GRCh38]
Chr12:14940209 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.1820C>T (p.Pro607Leu) single nucleotide variant Inborn genetic diseases [RCV004478049] Chr12:14787171 [GRCh38]
Chr12:14940105 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.574C>A (p.Arg192Ser) single nucleotide variant Inborn genetic diseases [RCV004478050] Chr12:14794684 [GRCh38]
Chr12:14947618 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.706T>C (p.Tyr236His) single nucleotide variant Inborn genetic diseases [RCV004478051] Chr12:14794552 [GRCh38]
Chr12:14947486 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.868C>T (p.His290Tyr) single nucleotide variant Inborn genetic diseases [RCV004478052] Chr12:14793776 [GRCh38]
Chr12:14946710 [GRCh37]
Chr12:12p12.3
uncertain significance
NM_016312.3(WBP11):c.64+1G>A single nucleotide variant not provided [RCV004698243] Chr12:14801319 [GRCh38]
Chr12:14954253 [GRCh37]
Chr12:12p12.3
likely pathogenic
NM_016312.3(WBP11):c.914G>T (p.Gly305Val) single nucleotide variant Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV004566632] Chr12:14791270 [GRCh38]
Chr12:14944204 [GRCh37]
Chr12:12p12.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:566
Count of miRNA genes:436
Interacting mature miRNAs:471
Transcripts:ENST00000261167, ENST00000535328, ENST00000535638, ENST00000543316, ENST00000544764
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407358373GWAS1007349_HBMI-adjusted hip circumference QTL GWAS1007349 (human)2e-08BMI-adjusted hip circumferencehip circumference (CMO:0000014)121479550014795501Human
407169101GWAS818077_Hdisease free survival QTL GWAS818077 (human)0.000005disease free survival121479248314792484Human

Markers in Region
WI-18587  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371214,939,430 - 14,939,559UniSTSGRCh37
Build 361214,830,697 - 14,830,826RGDNCBI36
Celera1220,084,418 - 20,084,547RGD
Cytogenetic Map12p12.3UniSTS
HuRef1214,708,886 - 14,709,015UniSTS
GeneMap99-GB4 RH Map1247.34UniSTS
Whitehead-RH Map12137.4UniSTS
NCBI RH Map12187.8UniSTS
D12S932  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371214,943,546 - 14,943,764UniSTSGRCh37
Build 361214,834,813 - 14,835,031RGDNCBI36
Celera1220,088,534 - 20,088,752RGD
Cytogenetic Map12p12.3UniSTS
HuRef1214,713,002 - 14,713,220UniSTS
D12S1247E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371214,939,117 - 14,939,210UniSTSGRCh37
Build 361214,830,384 - 14,830,477RGDNCBI36
Celera1220,084,105 - 20,084,198RGD
Cytogenetic Map12p12.3UniSTS
HuRef1214,708,573 - 14,708,666UniSTS
STS-H03835  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371214,939,013 - 14,939,224UniSTSGRCh37
Build 361214,830,280 - 14,830,491RGDNCBI36
Celera1220,084,001 - 20,084,212RGD
Cytogenetic Map12p12.3UniSTS
HuRef1214,708,469 - 14,708,680UniSTS
GeneMap99-GB4 RH Map1268.12UniSTS


Sequence


Ensembl Acc Id: ENST00000261167   ⟹   ENSP00000261167
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1214,784,582 - 14,803,478 (-)Ensembl
Ensembl Acc Id: ENST00000535328   ⟹   ENSP00000440988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1214,799,666 - 14,803,486 (-)Ensembl
Ensembl Acc Id: ENST00000535638   ⟹   ENSP00000443420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1214,790,689 - 14,801,428 (-)Ensembl
Ensembl Acc Id: ENST00000543316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1214,801,000 - 14,803,476 (-)Ensembl
Ensembl Acc Id: ENST00000544764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1214,799,441 - 14,803,486 (-)Ensembl
RefSeq Acc Id: NM_016312   ⟹   NP_057396
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381214,784,582 - 14,803,478 (-)NCBI
GRCh371214,937,513 - 14,956,420 (-)NCBI
Build 361214,830,679 - 14,847,668 (-)NCBI Archive
Celera1220,084,400 - 20,101,388 (-)RGD
HuRef1214,708,868 - 14,725,858 (-)RGD
CHM1_11214,905,505 - 14,922,494 (-)NCBI
T2T-CHM13v2.01214,661,939 - 14,680,843 (-)NCBI
Sequence:
RefSeq Acc Id: NP_057396   ⟸   NM_016312
- UniProtKB: Q96AY8 (UniProtKB/Swiss-Prot),   Q9Y2W2 (UniProtKB/Swiss-Prot),   B4DMD3 (UniProtKB/TrEMBL),   B4DY34 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000440988   ⟸   ENST00000535328
Ensembl Acc Id: ENSP00000443420   ⟸   ENST00000535638
Ensembl Acc Id: ENSP00000261167   ⟸   ENST00000261167

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y2W2-F1-model_v2 AlphaFold Q9Y2W2 1-641 view protein structure

Promoters
RGD ID:7223293
Promoter ID:EPDNEW_H17392
Type:initiation region
Name:WBP11_1
Description:WW domain binding protein 11
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381214,803,478 - 14,803,538EPDNEW
RGD ID:6790660
Promoter ID:HG_KWN:15110
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_016312,   NM_175874
Position:
Human AssemblyChrPosition (strand)Source
Build 361214,847,564 - 14,848,064 (-)MPROMDB
RGD ID:6852958
Promoter ID:EP74298
Type:initiation region
Name:HS_WBP11
Description:WW domain binding protein 11.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361214,847,677 - 14,847,737EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16461 AgrOrtholog
COSMIC WBP11 COSMIC
Ensembl Genes ENSG00000084463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000261167 ENTREZGENE
  ENST00000261167.7 UniProtKB/Swiss-Prot
  ENST00000535328.1 UniProtKB/TrEMBL
  ENST00000535638.5 UniProtKB/TrEMBL
GTEx ENSG00000084463 GTEx
HGNC ID HGNC:16461 ENTREZGENE
Human Proteome Map WBP11 Human Proteome Map
InterPro WW_dom-bd_prot_11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51729 UniProtKB/Swiss-Prot
NCBI Gene 51729 ENTREZGENE
OMIM 618083 OMIM
PANTHER PTHR13361 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW DOMAIN-BINDING PROTEIN 11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Wbp11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38144 PharmGKB
UniProt B4DMD3 ENTREZGENE, UniProtKB/TrEMBL
  B4DY34 ENTREZGENE, UniProtKB/TrEMBL
  F5GXS9_HUMAN UniProtKB/TrEMBL
  F5H5G4_HUMAN UniProtKB/TrEMBL
  Q96AY8 ENTREZGENE
  Q9Y2W2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q96AY8 UniProtKB/Swiss-Prot