Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | WBP11 | Human | VERTEBRAL, CARDIAC, TRACHEOESOPHAGEAL, RENAL, AND LIMB DEFECTS | | IAGP | | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | WBP11 | Human | VERTEBRAL, CARDIAC, TRACHEOESOPHAGEAL, RENAL, AND LIMB DEFECTS | | IAGP | | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | GOAs Human GO annotations | GOA_HUMAN data from the GO Consortium |
2. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
WBP11 (Homo sapiens - human) |
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Wbp11 (Mus musculus - house mouse) |
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Wbp11 (Rattus norvegicus - Norway rat) |
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Wbp11 (Chinchilla lanigera - long-tailed chinchilla) |
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WBP11 (Pan paniscus - bonobo/pygmy chimpanzee) |
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WBP11 (Canis lupus familiaris - dog) |
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Wbp11 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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WBP11 (Sus scrofa - pig) |
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WBP11 (Chlorocebus sabaeus - green monkey) |
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Wbp11 (Heterocephalus glaber - naked mole-rat) |
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Variants in WBP11
33 total Variants |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 12p13.33-11.22(chr12:121055-28415184)x1 | copy number loss | See cases [RCV000052776] | Chr12:121055..28415184 [GRCh38] Chr12:282465..28568117 [GRCh37] Chr12:100482..28459384 [NCBI36] Chr12:12p13.33-11.22 |
pathogenic |
GRCh38/hg38 12p13.2-12.3(chr12:12388842-15540422)x1 | copy number loss | See cases [RCV000052780] | Chr12:12388842..15540422 [GRCh38] Chr12:12541776..15693356 [GRCh37] Chr12:12433043..15584623 [NCBI36] Chr12:12p13.2-12.3 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:77187-34380176)x3 | copy number gain | See cases [RCV000053660] | Chr12:77187..34380176 [GRCh38] Chr12:282465..34533111 [GRCh37] Chr12:56614..34424378 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
GRCh38/hg38 12p13.33-12.1(chr12:80412-25470329)x3 | copy number gain | See cases [RCV000053662] | Chr12:80412..25470329 [GRCh38] Chr12:282465..25623263 [GRCh37] Chr12:59839..25514530 [NCBI36] Chr12:12p13.33-12.1 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:212976-33926913)x4 | copy number gain | See cases [RCV000053666] | Chr12:212976..33926913 [GRCh38] Chr12:322142..34079848 [GRCh37] Chr12:192403..33971115 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
NM_016312.2(WBP11):c.1177C>T (p.Pro393Ser) | single nucleotide variant | Malignant melanoma [RCV000069913] | Chr12:14790588 [GRCh38] Chr12:14943522 [GRCh37] Chr12:14834789 [NCBI36] Chr12:12p12.3 |
not provided |
NM_001013698.2(SMCO3):c.182C>T (p.Thr61Ile) | single nucleotide variant | Malignant melanoma [RCV000069914] | Chr12:14806499 [GRCh38] Chr12:14959433 [GRCh37] Chr12:14850700 [NCBI36] Chr12:12p12.3 |
not provided |
GRCh38/hg38 12p13.2-12.3(chr12:12363649-15280588)x1 | copy number loss | See cases [RCV000135331] | Chr12:12363649..15280588 [GRCh38] Chr12:12514722..15433522 [GRCh37] Chr12:12405989..15324789 [NCBI36] Chr12:12p13.2-12.3 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:121255-34603274)x3 | copy number gain | See cases [RCV000136611] | Chr12:121255..34603274 [GRCh38] Chr12:282465..34756209 [GRCh37] Chr12:100682..34647476 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
GRCh38/hg38 12p13.33-12.3(chr12:2871741-14987348)x3 | copy number gain | See cases [RCV000137694] | Chr12:2871741..14987348 [GRCh38] Chr12:2980907..15140282 [GRCh37] Chr12:2851168..15031549 [NCBI36] Chr12:12p13.33-12.3 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:121271-34603261)x3 | copy number gain | See cases [RCV000139052] | Chr12:121271..34603261 [GRCh38] Chr12:282465..34756196 [GRCh37] Chr12:100698..34647463 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:54427-34608071)x4 | copy number gain | See cases [RCV000139787] | Chr12:54427..34608071 [GRCh38] Chr12:282465..34761006 [GRCh37] Chr12:33854..34652273 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 | copy number gain | See cases [RCV000139555] | Chr12:121271..133196807 [GRCh38] Chr12:282465..133773393 [GRCh37] Chr12:100698..132283466 [NCBI36] Chr12:12p13.33-q24.33 |
pathogenic |
GRCh38/hg38 12p13.33-12.2(chr12:1258274-20657577)x3 | copy number gain | See cases [RCV000141905] | Chr12:1258274..20657577 [GRCh38] Chr12:1367440..20810511 [GRCh37] Chr12:1237701..20701778 [NCBI36] Chr12:12p13.33-12.2 |
pathogenic |
GRCh38/hg38 12p13.33-11.1(chr12:64620-34682902)x4 | copy number gain | See cases [RCV000142149] | Chr12:64620..34682902 [GRCh38] Chr12:173786..34835837 [GRCh37] Chr12:44047..34727104 [NCBI36] Chr12:12p13.33-11.1 |
pathogenic |
GRCh38/hg38 12p13.2-12.3(chr12:11121039-15908154)x1 | copy number loss | See cases [RCV000142882] | Chr12:11121039..15908154 [GRCh38] Chr12:11273638..16061088 [GRCh37] Chr12:11164905..15952355 [NCBI36] Chr12:12p13.2-12.3 |
likely pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:148034-34178799)x4 | copy number gain | See cases [RCV000240164] | Chr12:148034..34178799 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 | copy number gain | See cases [RCV000258805] | Chr12:1..133851895 [GRCh37] Chr12:12p13.33-q24.33 |
pathogenic|likely pathogenic |
chr12:10074776-18800953 complex variant | complex | Breast ductal adenocarcinoma [RCV000207105] | Chr12:10074776..18800953 [GRCh37] Chr12:12p13.31-12.3 |
uncertain significance |
GRCh37/hg19 12p13.33-11.1(chr12:89061-34178799)x3 | copy number gain | See cases [RCV000240487] | Chr12:89061..34178799 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301)x3 | copy number gain | See cases [RCV000449191] | Chr12:173786..37869301 [GRCh37] Chr12:12p13.33-q11 |
pathogenic |
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865)x3 | copy number gain | See cases [RCV000449287] | Chr12:173786..25286865 [GRCh37] Chr12:12p13.33-12.1 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 | copy number gain | See cases [RCV000447551] | Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-12.2(chr12:173786-20026080)x3 | copy number gain | See cases [RCV000446050] | Chr12:173786..20026080 [GRCh37] Chr12:12p13.33-12.2 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:189578-34756150) | copy number gain | See cases [RCV000446017] | Chr12:189578..34756150 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 | copy number gain | See cases [RCV000510482] | Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:565369-34835837)x3 | copy number gain | See cases [RCV000511580] | Chr12:565369..34835837 [GRCh37] Chr12:12p13.33-11.1 |
likely pathogenic |
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) | copy number gain | See cases [RCV000511643] | Chr12:173787..133777902 [GRCh37] Chr12:12p13.33-q24.33 |
pathogenic |
GRCh37/hg19 12p13.33-11.22(chr12:173786-28219229)x3 | copy number gain | See cases [RCV000510961] | Chr12:173786..28219229 [GRCh37] Chr12:12p13.33-11.22 |
pathogenic |
NM_016312.3(WBP11):c.572C>T (p.Pro191Leu) | single nucleotide variant | Inborn genetic diseases [RCV003277128] | Chr12:14794686 [GRCh38] Chr12:14947620 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1787C>T (p.Pro596Leu) | single nucleotide variant | Inborn genetic diseases [RCV003243878] | Chr12:14787204 [GRCh38] Chr12:14940138 [GRCh37] Chr12:12p12.3 |
uncertain significance |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x3 | copy number gain | not provided [RCV000683479] | Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837)x2,3 | copy number gain | not provided [RCV000683478] | Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-q11(chr12:173786-37869107)x3 | copy number gain | not provided [RCV000683480] | Chr12:173786..37869107 [GRCh37] Chr12:12p13.33-q11 |
pathogenic |
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 | copy number gain | not provided [RCV000750246] | Chr12:191619..133777645 [GRCh37] Chr12:12p13.33-q24.33 |
pathogenic |
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 | copy number gain | not provided [RCV000750253] | Chr12:621220..133779118 [GRCh37] Chr12:12p13.33-q24.33 |
pathogenic |
GRCh37/hg19 12p13.33-11.21(chr12:191619-31733044)x3 | copy number gain | not provided [RCV000750245] | Chr12:191619..31733044 [GRCh37] Chr12:12p13.33-11.21 |
pathogenic |
GRCh37/hg19 12p13.33-12.3(chr12:189216-15001420) | copy number gain | not provided [RCV000767817] | Chr12:189216..15001420 [GRCh37] Chr12:12p13.33-12.3 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34496628)x3 | copy number gain | not provided [RCV000847209] | Chr12:173786..34496628 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.2-12.3(chr12:11737824-16780886)x1 | copy number loss | not provided [RCV001006482] | Chr12:11737824..16780886 [GRCh37] Chr12:12p13.2-12.3 |
pathogenic |
NM_016312.3(WBP11):c.612del (p.Gly205fs) | deletion | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312231]|WBP11 spliceosomopathy [RCV001199834] | Chr12:14794646 [GRCh38] Chr12:14947580 [GRCh37] Chr12:12p12.3 |
pathogenic|likely pathogenic |
NM_016312.3(WBP11):c.484C>T (p.Gln162Ter) | single nucleotide variant | WBP11 spliceosomopathy [RCV001199831] | Chr12:14795008 [GRCh38] Chr12:14947942 [GRCh37] Chr12:12p12.3 |
pathogenic |
NM_016312.3(WBP11):c.280C>T (p.Arg94Ter) | single nucleotide variant | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312232]|WBP11 spliceosomopathy [RCV001199830] | Chr12:14796914 [GRCh38] Chr12:14949848 [GRCh37] Chr12:12p12.3 |
pathogenic|likely pathogenic |
NM_016312.3(WBP11):c.937A>G (p.Met313Val) | single nucleotide variant | Inborn genetic diseases [RCV003290514] | Chr12:14791247 [GRCh38] Chr12:14944181 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1559dup (p.Gly521fs) | duplication | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003339526]|WBP11 spliceosomopathy [RCV001199832] | Chr12:14787431..14787432 [GRCh38] Chr12:14940365..14940366 [GRCh37] Chr12:12p12.3 |
pathogenic |
NM_016312.3(WBP11):c.688C>T (p.Arg230Ter) | single nucleotide variant | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001312230]|WBP11 spliceosomopathy [RCV001199833] | Chr12:14794570 [GRCh38] Chr12:14947504 [GRCh37] Chr12:12p12.3 |
pathogenic |
GRCh37/hg19 12p13.33-q11(chr12:274676-37869301)x4 | copy number gain | not provided [RCV001006470] | Chr12:274676..37869301 [GRCh37] Chr12:12p13.33-q11 |
pathogenic |
NM_016312.3(WBP11):c.169A>G (p.Met57Val) | single nucleotide variant | WBP11 spliceosomopathy [RCV001199835] | Chr12:14799656 [GRCh38] Chr12:14952590 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.387+11dup | duplication | not provided [RCV001639627] | Chr12:14796786..14796787 [GRCh38] Chr12:14949720..14949721 [GRCh37] Chr12:12p12.3 |
benign |
NM_016312.3(WBP11):c.1792A>G (p.Arg598Gly) | single nucleotide variant | Inborn genetic diseases [RCV004683534] | Chr12:14787199 [GRCh38] Chr12:14940133 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.331G>T (p.Glu111Ter) | single nucleotide variant | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV001754553] | Chr12:14796863 [GRCh38] Chr12:14949797 [GRCh37] Chr12:12p12.3 |
likely pathogenic |
NM_016312.3(WBP11):c.585del (p.Gly196fs) | deletion | Inborn genetic diseases [RCV004683533] | Chr12:14794673 [GRCh38] Chr12:14947607 [GRCh37] Chr12:12p12.3 |
pathogenic |
NM_016312.3(WBP11):c.1592C>G (p.Pro531Arg) | single nucleotide variant | Inborn genetic diseases [RCV004683536] | Chr12:14787399 [GRCh38] Chr12:14940333 [GRCh37] Chr12:12p12.3 |
uncertain significance |
GRCh37/hg19 12p13.33-12.1(chr12:173786-25286865) | copy number gain | not specified [RCV002052955] | Chr12:173786..25286865 [GRCh37] Chr12:12p13.33-12.1 |
pathogenic |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835837) | copy number gain | not specified [RCV002052957] | Chr12:173786..34835837 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
GRCh37/hg19 12p13.33-q11(chr12:173786-37869301) | copy number gain | not specified [RCV002052958] | Chr12:173786..37869301 [GRCh37] Chr12:12p13.33-q11 |
pathogenic |
NC_000012.11:g.(?_11803062)_(15835885_?)dup | duplication | Intellectual disability, autosomal dominant 6 [RCV001931714]|not provided [RCV001946435] | Chr12:11803062..15835885 [GRCh37] Chr12:12p13.2-12.3 |
uncertain significance|no classifications from unflagged records |
NC_000012.11:g.(?_14849146)_(15669910_?)dup | duplication | not provided [RCV001978819] | Chr12:14849146..15669910 [GRCh37] Chr12:12p12.3 |
uncertain significance |
GRCh37/hg19 12p13.2-12.1(chr12:10853887-24103810)x1 | copy number loss | not provided [RCV002292878] | Chr12:10853887..24103810 [GRCh37] Chr12:12p13.2-12.1 |
pathogenic |
NM_016312.3(WBP11):c.1505C>T (p.Pro502Leu) | single nucleotide variant | not provided [RCV002293845] | Chr12:14787486 [GRCh38] Chr12:14940420 [GRCh37] Chr12:12p12.3 |
uncertain significance |
GRCh37/hg19 12p13.33-11.1(chr12:176047-34179852)x4 | copy number gain | Pallister-Killian syndrome [RCV003154827] | Chr12:176047..34179852 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
NM_016312.3(WBP11):c.431T>C (p.Met144Thr) | single nucleotide variant | Inborn genetic diseases [RCV002970501] | Chr12:14795061 [GRCh38] Chr12:14947995 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1802_1803del (p.Glu601fs) | microsatellite | Inborn genetic diseases [RCV002707841] | Chr12:14787188..14787189 [GRCh38] Chr12:14940122..14940123 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1104G>C (p.Lys368Asn) | single nucleotide variant | Inborn genetic diseases [RCV002845197] | Chr12:14790661 [GRCh38] Chr12:14943595 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.925C>T (p.Arg309Trp) | single nucleotide variant | Inborn genetic diseases [RCV002983865] | Chr12:14791259 [GRCh38] Chr12:14944193 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1039C>T (p.Arg347Trp) | single nucleotide variant | Inborn genetic diseases [RCV002873767] | Chr12:14790726 [GRCh38] Chr12:14943660 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1181C>T (p.Pro394Leu) | single nucleotide variant | Inborn genetic diseases [RCV002701572] | Chr12:14790584 [GRCh38] Chr12:14943518 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1148C>T (p.Thr383Ile) | single nucleotide variant | Inborn genetic diseases [RCV002744351]|not provided [RCV003395686] | Chr12:14790617 [GRCh38] Chr12:14943551 [GRCh37] Chr12:12p12.3 |
benign|likely benign|uncertain significance |
NM_016312.3(WBP11):c.742G>A (p.Asp248Asn) | single nucleotide variant | Inborn genetic diseases [RCV002965662] | Chr12:14793902 [GRCh38] Chr12:14946836 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.556C>G (p.Leu186Val) | single nucleotide variant | Inborn genetic diseases [RCV002989617] | Chr12:14794702 [GRCh38] Chr12:14947636 [GRCh37] Chr12:12p12.3 |
likely benign |
NM_016312.3(WBP11):c.509C>T (p.Thr170Ile) | single nucleotide variant | Inborn genetic diseases [RCV002718474] | Chr12:14794983 [GRCh38] Chr12:14947917 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1540C>A (p.Pro514Thr) | single nucleotide variant | Inborn genetic diseases [RCV002935022] | Chr12:14787451 [GRCh38] Chr12:14940385 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.99C>G (p.Asn33Lys) | single nucleotide variant | not provided [RCV003225420] | Chr12:14799726 [GRCh38] Chr12:14952660 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.758G>A (p.Ser253Asn) | single nucleotide variant | Inborn genetic diseases [RCV003181354] | Chr12:14793886 [GRCh38] Chr12:14946820 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.386A>G (p.Lys129Arg) | single nucleotide variant | not provided [RCV003223958] | Chr12:14796808 [GRCh38] Chr12:14949742 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1237_1251del (p.Leu413_Pro417del) | deletion | not provided [RCV003323256] | Chr12:14790514..14790528 [GRCh38] Chr12:14943448..14943462 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.280C>G (p.Arg94Gly) | single nucleotide variant | not provided [RCV003318865] | Chr12:14796914 [GRCh38] Chr12:14949848 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1298G>T (p.Gly433Val) | single nucleotide variant | not provided [RCV003319762] | Chr12:14790467 [GRCh38] Chr12:14943401 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.972G>A (p.Met324Ile) | single nucleotide variant | not provided [RCV003319091] | Chr12:14791212 [GRCh38] Chr12:14944146 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1493G>T (p.Gly498Val) | single nucleotide variant | Inborn genetic diseases [RCV003381965] | Chr12:14787498 [GRCh38] Chr12:14940432 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1526C>A (p.Pro509Gln) | single nucleotide variant | Inborn genetic diseases [RCV003364647] | Chr12:14787465 [GRCh38] Chr12:14940399 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1521dup (p.Arg508fs) | duplication | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003332931] | Chr12:14787469..14787470 [GRCh38] Chr12:14940403..14940404 [GRCh37] Chr12:12p12.3 |
pathogenic |
NM_016312.3(WBP11):c.871C>T (p.Arg291Cys) | single nucleotide variant | Inborn genetic diseases [RCV003349568] | Chr12:14793773 [GRCh38] Chr12:14946707 [GRCh37] Chr12:12p12.3 |
uncertain significance |
Single allele | duplication | not provided [RCV003448692] | Chr12:188053..34856694 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
NM_016312.3(WBP11):c.1397G>A (p.Arg466Gln) | single nucleotide variant | not provided [RCV003396258] | Chr12:14789046 [GRCh38] Chr12:14941980 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.251dup (p.Leu85fs) | duplication | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV003388640] | Chr12:14796942..14796943 [GRCh38] Chr12:14949876..14949877 [GRCh37] Chr12:12p12.3 |
likely pathogenic |
NM_016312.3(WBP11):c.191-8_191-3del | deletion | WBP11-related disorder [RCV003429070] | Chr12:14797006..14797011 [GRCh38] Chr12:14949940..14949945 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1213C>T (p.Pro405Ser) | single nucleotide variant | not provided [RCV003390184] | Chr12:14790552 [GRCh38] Chr12:14943486 [GRCh37] Chr12:12p12.3 |
likely benign |
NM_016312.3(WBP11):c.1192C>G (p.Pro398Ala) | single nucleotide variant | WBP11-related disorder [RCV003410533] | Chr12:14790573 [GRCh38] Chr12:14943507 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1203G>C (p.Gln401His) | single nucleotide variant | not provided [RCV003390185] | Chr12:14790562 [GRCh38] Chr12:14943496 [GRCh37] Chr12:12p12.3 |
uncertain significance |
GRCh37/hg19 12p13.33-11.1(chr12:173786-34835641)x3 | copy number gain | not specified [RCV003986979] | Chr12:173786..34835641 [GRCh37] Chr12:12p13.33-11.1 |
pathogenic |
NM_016312.3(WBP11):c.1396C>T (p.Arg466Ter) | single nucleotide variant | not provided [RCV003887682] | Chr12:14789047 [GRCh38] Chr12:14941981 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.533G>A (p.Arg178Gln) | single nucleotide variant | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV004555993] | Chr12:14794725 [GRCh38] Chr12:14947659 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.734ATG[3] (p.Asp248del) | microsatellite | not provided [RCV004585839] | Chr12:14793899..14793901 [GRCh38] Chr12:14946833..14946835 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1093G>A (p.Glu365Lys) | single nucleotide variant | Inborn genetic diseases [RCV004478045] | Chr12:14790672 [GRCh38] Chr12:14943606 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1352G>A (p.Arg451Gln) | single nucleotide variant | Inborn genetic diseases [RCV004478046] | Chr12:14789091 [GRCh38] Chr12:14942025 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1541C>A (p.Pro514His) | single nucleotide variant | Inborn genetic diseases [RCV004478047] | Chr12:14787450 [GRCh38] Chr12:14940384 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1716G>C (p.Lys572Asn) | single nucleotide variant | Inborn genetic diseases [RCV004478048] | Chr12:14787275 [GRCh38] Chr12:14940209 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.1820C>T (p.Pro607Leu) | single nucleotide variant | Inborn genetic diseases [RCV004478049] | Chr12:14787171 [GRCh38] Chr12:14940105 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.574C>A (p.Arg192Ser) | single nucleotide variant | Inborn genetic diseases [RCV004478050] | Chr12:14794684 [GRCh38] Chr12:14947618 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.706T>C (p.Tyr236His) | single nucleotide variant | Inborn genetic diseases [RCV004478051] | Chr12:14794552 [GRCh38] Chr12:14947486 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.868C>T (p.His290Tyr) | single nucleotide variant | Inborn genetic diseases [RCV004478052] | Chr12:14793776 [GRCh38] Chr12:14946710 [GRCh37] Chr12:12p12.3 |
uncertain significance |
NM_016312.3(WBP11):c.64+1G>A | single nucleotide variant | not provided [RCV004698243] | Chr12:14801319 [GRCh38] Chr12:14954253 [GRCh37] Chr12:12p12.3 |
likely pathogenic |
NM_016312.3(WBP11):c.914G>T (p.Gly305Val) | single nucleotide variant | Vertebral, cardiac, tracheoesophageal, renal, and limb defects [RCV004566632] | Chr12:14791270 [GRCh38] Chr12:14944204 [GRCh37] Chr12:12p12.3 |
uncertain significance |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
WI-18587 |
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D12S932 |
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D12S1247E |
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STS-H03835 |
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Ensembl Acc Id: | ENST00000261167 ⟹ ENSP00000261167 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENST00000535328 ⟹ ENSP00000440988 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENST00000535638 ⟹ ENSP00000443420 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENST00000543316 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENST00000544764 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_016312 ⟹ NP_057396 | ||||||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NP_057396 ⟸ NM_016312 |
- UniProtKB: | Q96AY8 (UniProtKB/Swiss-Prot), Q9Y2W2 (UniProtKB/Swiss-Prot), B4DMD3 (UniProtKB/TrEMBL), B4DY34 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSP00000440988 ⟸ ENST00000535328 |
Ensembl Acc Id: | ENSP00000443420 ⟸ ENST00000535638 |
Ensembl Acc Id: | ENSP00000261167 ⟸ ENST00000261167 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9Y2W2-F1-model_v2 | AlphaFold | Q9Y2W2 | 1-641 | view protein structure |
RGD ID: | 7223293 | ||||||||
Promoter ID: | EPDNEW_H17392 | ||||||||
Type: | initiation region | ||||||||
Name: | WBP11_1 | ||||||||
Description: | WW domain binding protein 11 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6790660 | ||||||||
Promoter ID: | HG_KWN:15110 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | NM_016312, NM_175874 | ||||||||
Position: |
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RGD ID: | 6852958 | ||||||||
Promoter ID: | EP74298 | ||||||||
Type: | initiation region | ||||||||
Name: | HS_WBP11 | ||||||||
Description: | WW domain binding protein 11. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Mammalian gene collection (MGC) full-length cDNA cloning | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | HGNC:16461 | AgrOrtholog |
COSMIC | WBP11 | COSMIC |
Ensembl Genes | ENSG00000084463 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENST00000261167 | ENTREZGENE |
ENST00000261167.7 | UniProtKB/Swiss-Prot | |
ENST00000535328.1 | UniProtKB/TrEMBL | |
ENST00000535638.5 | UniProtKB/TrEMBL | |
GTEx | ENSG00000084463 | GTEx |
HGNC ID | HGNC:16461 | ENTREZGENE |
Human Proteome Map | WBP11 | Human Proteome Map |
InterPro | WW_dom-bd_prot_11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
KEGG Report | hsa:51729 | UniProtKB/Swiss-Prot |
NCBI Gene | 51729 | ENTREZGENE |
OMIM | 618083 | OMIM |
PANTHER | PTHR13361 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
WW DOMAIN-BINDING PROTEIN 11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Wbp11 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA38144 | PharmGKB |
UniProt | B4DMD3 | ENTREZGENE, UniProtKB/TrEMBL |
B4DY34 | ENTREZGENE, UniProtKB/TrEMBL | |
F5GXS9_HUMAN | UniProtKB/TrEMBL | |
F5H5G4_HUMAN | UniProtKB/TrEMBL | |
Q96AY8 | ENTREZGENE | |
Q9Y2W2 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | Q96AY8 | UniProtKB/Swiss-Prot |