RBM24 (RNA binding motif protein 24) - Rat Genome Database

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Gene: RBM24 (RNA binding motif protein 24) Homo sapiens
Analyze
Symbol: RBM24
Name: RNA binding motif protein 24
RGD ID: 1317276
HGNC Page HGNC:21539
Description: Enables mRNA 3'-UTR AU-rich region binding activity; mRNA CDS binding activity; and sequence-specific mRNA binding activity. Involved in several processes, including negative regulation of cytoplasmic translation; positive regulation of cell differentiation; and regulation of mRNA metabolic process. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dJ259A10.1; FLJ26355; FLJ30829; FLJ37697; RNA-binding motif protein 24; RNA-binding protein 24; RNA-binding region (RNP1, RRM) containing 6; RNA-binding region-containing protein 6; RNPC6
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38617,281,361 - 17,293,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl617,281,361 - 17,293,871 (+)EnsemblGRCh38hg38GRCh38
GRCh37617,281,592 - 17,294,102 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36617,390,911 - 17,402,052 (+)NCBINCBI36Build 36hg18NCBI36
Build 34617,390,910 - 17,402,052NCBI
Celera618,520,103 - 18,532,397 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef617,228,106 - 17,240,362 (+)NCBIHuRef
CHM1_1617,284,282 - 17,296,587 (+)NCBICHM1_1
T2T-CHM13v2.0617,153,424 - 17,165,937 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
3',5'-cyclic UMP  (EXP)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
afimoxifene  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alpha-Zearalanol  (ISO)
aristolochic acid A  (EXP)
arsenite(3-)  (EXP)
azathioprine  (EXP)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (EXP)
cantharidin  (ISO)
cisplatin  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (EXP)
coumestrol  (EXP)
Cuprizon  (ISO)
cyclosporin A  (EXP)
diethylstilbestrol  (EXP)
dorsomorphin  (EXP)
entinostat  (EXP)
ethanol  (ISO)
folic acid  (ISO)
furan  (ISO)
gentamycin  (ISO)
glycidol  (ISO)
irinotecan  (EXP)
iron dichloride  (EXP)
lead diacetate  (ISO)
melphalan  (EXP)
methimazole  (ISO)
methylisothiazolinone  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (EXP)
nickel sulfate  (EXP)
panobinostat  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (EXP)
propanal  (EXP)
quercetin  (EXP)
quinolin-8-ol  (EXP)
resveratrol  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
Soman  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
temozolomide  (EXP)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichostatin A  (EXP)
triclosan  (EXP)
urethane  (EXP)
valproic acid  (EXP)
zearalenone  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA,IDA)
nucleoplasm  (IDA)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14574404   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16713569   PMID:19817877   PMID:21873635   PMID:22542470   PMID:24356969   PMID:24375645   PMID:26186194  
PMID:26816005   PMID:26844700   PMID:26990106   PMID:27584791   PMID:28514442   PMID:28592461   PMID:29104163   PMID:29358667   PMID:29380205   PMID:29760415   PMID:30626666   PMID:32238831  
PMID:32296183   PMID:33085761   PMID:33577026   PMID:33961781   PMID:34021255   PMID:34328265   PMID:34709758   PMID:34816743   PMID:35013218   PMID:35271311   PMID:36454480   PMID:36464077  
PMID:37450367   PMID:38158676   PMID:38441112   PMID:39004256  


Genomics

Comparative Map Data
RBM24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38617,281,361 - 17,293,871 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl617,281,361 - 17,293,871 (+)EnsemblGRCh38hg38GRCh38
GRCh37617,281,592 - 17,294,102 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36617,390,911 - 17,402,052 (+)NCBINCBI36Build 36hg18NCBI36
Build 34617,390,910 - 17,402,052NCBI
Celera618,520,103 - 18,532,397 (+)NCBICelera
Cytogenetic Map6p22.3NCBI
HuRef617,228,106 - 17,240,362 (+)NCBIHuRef
CHM1_1617,284,282 - 17,296,587 (+)NCBICHM1_1
T2T-CHM13v2.0617,153,424 - 17,165,937 (+)NCBIT2T-CHM13v2.0
Rbm24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391346,571,664 - 46,584,575 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1346,571,910 - 46,584,571 (+)EnsemblGRCm39 Ensembl
GRCm381346,418,102 - 46,431,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1346,418,434 - 46,431,095 (+)EnsemblGRCm38mm10GRCm38
MGSCv371346,513,669 - 46,526,468 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361346,429,272 - 46,442,071 (+)NCBIMGSCv36mm8
Celera1347,498,497 - 47,510,578 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1323.61NCBI
Rbm24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81718,481,893 - 18,494,440 (-)NCBIGRCr8
mRatBN7.21718,275,681 - 18,288,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1718,275,688 - 18,288,102 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1718,161,320 - 18,172,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01719,765,179 - 19,776,835 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01718,088,438 - 18,100,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01718,671,037 - 18,682,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1718,671,044 - 18,682,876 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01719,261,277 - 19,269,603 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41724,217,930 - 24,229,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1717,982,465 - 17,992,876 (-)NCBICelera
Cytogenetic Map17p14NCBI
Rbm24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554838,705,213 - 8,716,778 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554838,705,533 - 8,716,772 (-)NCBIChiLan1.0ChiLan1.0
RBM24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2531,951,899 - 31,964,487 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1627,936,970 - 27,949,488 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0617,140,450 - 17,153,035 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1617,501,025 - 17,513,370 (+)NCBIpanpan1.1PanPan1.1panPan2
RBM24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13516,255,076 - 16,294,967 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3516,205,187 - 16,215,074 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03516,358,635 - 16,368,517 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3516,358,668 - 16,369,517 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13516,175,712 - 16,185,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03516,228,402 - 16,238,269 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03517,562,212 - 17,572,104 (+)NCBIUU_Cfam_GSD_1.0
Rbm24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049468,426,609 - 8,439,004 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365523,291,755 - 3,304,332 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365523,291,727 - 3,304,332 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1713,126,518 - 13,139,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2713,741,148 - 13,753,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11754,853,761 - 54,865,742 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1754,853,761 - 54,866,058 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604417,359,706 - 17,373,001 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247569,250,945 - 9,262,899 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247569,253,310 - 9,262,859 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RBM24
10 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p24.1-22.3(chr6:13093117-22126024)x3 copy number gain See cases [RCV000051897] Chr6:13093117..22126024 [GRCh38]
Chr6:13093349..22126253 [GRCh37]
Chr6:13201335..22234232 [NCBI36]
Chr6:6p24.1-22.3		 pathogenic
GRCh38/hg38 6p25.3-22.3(chr6:106431-18360595)x3 copy number gain See cases [RCV000051869] Chr6:106431..18360595 [GRCh38]
Chr6:106431..18360826 [GRCh37]
Chr6:51431..18468805 [NCBI36]
Chr6:6p25.3-22.3		 pathogenic
NM_001143941.1(RBM24):c.167C>T (p.Pro56Leu) single nucleotide variant Malignant melanoma [RCV000067221] Chr6:17284705 [GRCh38]
Chr6:17284936 [GRCh37]
Chr6:17392915 [NCBI36]
Chr6:6p22.3		 not provided
NM_001143941.1(RBM24):c.23A>G (p.Glu8Gly) single nucleotide variant Malignant melanoma [RCV000061357] Chr6:17282833 [GRCh38]
Chr6:17283064 [GRCh37]
Chr6:17391043 [NCBI36]
Chr6:6p22.3		 not provided
GRCh38/hg38 6p23-22.3(chr6:14730556-17554091)x1 copy number loss See cases [RCV000137275] Chr6:14730556..17554091 [GRCh38]
Chr6:14730787..17554322 [GRCh37]
Chr6:14838766..17662301 [NCBI36]
Chr6:6p23-22.3		 likely pathogenic
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33		 pathogenic
GRCh38/hg38 6p23-22.3(chr6:14958760-18580908)x3 copy number gain See cases [RCV000140810] Chr6:14958760..18580908 [GRCh38]
Chr6:14958991..18581139 [GRCh37]
Chr6:15066970..18689118 [NCBI36]
Chr6:6p23-22.3		 uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3		 pathogenic
GRCh37/hg19 6p25.1-22.3(chr6:5354402-17950079)x1 copy number loss See cases [RCV000240576] Chr6:5354402..17950079 [GRCh37]
Chr6:6p25.1-22.3		 pathogenic
GRCh37/hg19 6p25.3-22.3(chr6:168775-24023234)x3 copy number gain See cases [RCV000240460] Chr6:168775..24023234 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
GRCh37/hg19 6p25.3-22.3(chr6:302272-18375047)x3 copy number gain See cases [RCV000446145] Chr6:302272..18375047 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
GRCh37/hg19 6p24.3-22.3(chr6:8269414-17402660)x3 copy number gain See cases [RCV000447409] Chr6:8269414..17402660 [GRCh37]
Chr6:6p24.3-22.3		 likely pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
NM_001143942.2(RBM24):c.352C>G (p.Pro118Ala) single nucleotide variant not specified [RCV004309132] Chr6:17291760 [GRCh38]
Chr6:17291991 [GRCh37]
Chr6:6p22.3		 uncertain significance
GRCh37/hg19 6p23-22.3(chr6:13693852-24225515)x1 copy number loss See cases [RCV000512269] Chr6:13693852..24225515 [GRCh37]
Chr6:6p23-22.3		 pathogenic
GRCh37/hg19 6p25.3-22.3(chr6:156974-21955964)x3 copy number gain not provided [RCV000682629] Chr6:156974..21955964 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
Single allele duplication not provided [RCV000677944] Chr6:168775..24023234 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27		 pathogenic
GRCh37/hg19 6p23-22.3(chr6:13910125-22000204)x1 copy number loss not provided [RCV000848884] Chr6:13910125..22000204 [GRCh37]
Chr6:6p23-22.3		 pathogenic
GRCh37/hg19 6p24.1-22.3(chr6:13248587-18083552)x3 copy number gain not provided [RCV000849796] Chr6:13248587..18083552 [GRCh37]
Chr6:6p24.1-22.3		 uncertain significance
GRCh37/hg19 6p25.3-22.3(chr6:156974-23221621)x3 copy number gain not provided [RCV000848108] Chr6:156974..23221621 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
GRCh37/hg19 6p24.3-22.3(chr6:8269414-17402660) copy number gain not specified [RCV002053552] Chr6:8269414..17402660 [GRCh37]
Chr6:6p24.3-22.3		 likely pathogenic
GRCh37/hg19 6p24.1-22.3(chr6:12005630-22849647)x1 copy number loss not provided [RCV002475759] Chr6:12005630..22849647 [GRCh37]
Chr6:6p24.1-22.3		 pathogenic
NM_001143942.2(RBM24):c.649G>A (p.Ala217Thr) single nucleotide variant not specified [RCV004169562] Chr6:17292057 [GRCh38]
Chr6:17292288 [GRCh37]
Chr6:6p22.3		 uncertain significance
GRCh37/hg19 6p25.3-22.3(chr6:820000-21700000)x3 copy number gain See cases [RCV002509885] Chr6:820000..21700000 [GRCh37]
Chr6:6p25.3-22.3		 pathogenic
NM_001143942.2(RBM24):c.218A>G (p.Asn73Ser) single nucleotide variant not specified [RCV004178274] Chr6:17282854 [GRCh38]
Chr6:17283085 [GRCh37]
Chr6:6p22.3		 uncertain significance
NM_001143942.2(RBM24):c.586G>A (p.Ala196Thr) single nucleotide variant not specified [RCV004365196] Chr6:17291994 [GRCh38]
Chr6:17292225 [GRCh37]
Chr6:6p22.3		 uncertain significance
NM_001143942.2(RBM24):c.595C>G (p.Gln199Glu) single nucleotide variant not specified [RCV004363073] Chr6:17292003 [GRCh38]
Chr6:17292234 [GRCh37]
Chr6:6p22.3		 uncertain significance
NM_001143942.2(RBM24):c.201G>T (p.Arg67Ser) single nucleotide variant not specified [RCV004441204] Chr6:17282837 [GRCh38]
Chr6:17283068 [GRCh37]
Chr6:6p22.3		 uncertain significance
NM_001143942.2(RBM24):c.472G>A (p.Ala158Thr) single nucleotide variant not specified [RCV004441205] Chr6:17291880 [GRCh38]
Chr6:17292111 [GRCh37]
Chr6:6p22.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2276
Count of miRNA genes:683
Interacting mature miRNAs:766
Transcripts:ENST00000318204, ENST00000379052, ENST00000425446, ENST00000503965, ENST00000504055, ENST00000508508, ENST00000509686, ENST00000510826
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289408BW324_HBody weight QTL 324 (human)3.150.0001Body fat amount6120803913Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1643418BW282_HBody Weight QTL 282 (human)2.070.001Body weight6119321359Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
2289435BMD4_HBone mineral density QTL 4 (human)3.150.0001Bone mineral density6120803913Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
2292824PRSTS5_HProstate tumor susceptibility QTL 5 (human)Prostate tumor susceptibility6119232373Human
2289320BW390_HBody weight QTL 390 (human)2.13Body weightBMI6119321359Human
1643495BW291_HBody Weight QTL 291 (human)2.13Body weightBMI6119321359Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human

Markers in Region
STS-N39066  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37617,293,364 - 17,293,547UniSTSGRCh37
Build 36617,401,343 - 17,401,526RGDNCBI36
Celera618,531,659 - 18,531,842RGD
Cytogenetic Map6p22.3UniSTS
HuRef617,239,624 - 17,239,807UniSTS
GeneMap99-GB4 RH Map666.16UniSTS
NCBI RH Map6224.8UniSTS
D6S1242E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37617,292,594 - 17,292,755UniSTSGRCh37
Build 36617,400,573 - 17,400,734RGDNCBI36
Celera618,530,889 - 18,531,050RGD
Cytogenetic Map6p22.3UniSTS
HuRef617,238,854 - 17,239,015UniSTS
GeneMap99-GB4 RH Map673.01UniSTS
NCBI RH Map6163.0UniSTS
RBM24__5655  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37617,293,369 - 17,294,208UniSTSGRCh37
Build 36617,401,348 - 17,402,187RGDNCBI36
Celera618,531,664 - 18,532,503RGD
HuRef617,239,629 - 17,240,468UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2383 2788 2233 4922 1712 2293 3 616 1236 457 2246 6540 5765 38 3706 1 825 1726 1566 171 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001143941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001143942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005248932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047418369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054354629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK055391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY547318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP309176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT585247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000318204   ⟹   ENSP00000319551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,282,701 - 17,293,866 (+)Ensembl
Ensembl Acc Id: ENST00000379052   ⟹   ENSP00000368341
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,281,361 - 17,293,871 (+)Ensembl
Ensembl Acc Id: ENST00000425446   ⟹   ENSP00000396898
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,282,064 - 17,292,454 (+)Ensembl
Ensembl Acc Id: ENST00000503965   ⟹   ENSP00000421971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,282,337 - 17,292,136 (+)Ensembl
Ensembl Acc Id: ENST00000504055
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,283,044 - 17,292,217 (+)Ensembl
Ensembl Acc Id: ENST00000508508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,289,969 - 17,293,023 (+)Ensembl
Ensembl Acc Id: ENST00000509686   ⟹   ENSP00000426222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,281,705 - 17,293,030 (+)Ensembl
Ensembl Acc Id: ENST00000510826
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl617,289,855 - 17,292,763 (+)Ensembl
RefSeq Acc Id: NM_001143941   ⟹   NP_001137413
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,282,064 - 17,293,871 (+)NCBI
GRCh37617,281,739 - 17,294,102 (+)NCBI
Celera618,520,103 - 18,532,397 (+)RGD
HuRef617,228,106 - 17,240,362 (+)RGD
CHM1_1617,284,768 - 17,296,587 (+)NCBI
T2T-CHM13v2.0617,154,127 - 17,165,933 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001143942   ⟹   NP_001137414
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,281,361 - 17,293,871 (+)NCBI
GRCh37617,281,739 - 17,294,102 (+)NCBI
Celera618,520,103 - 18,532,397 (+)RGD
HuRef617,228,106 - 17,240,362 (+)RGD
CHM1_1617,284,282 - 17,296,587 (+)NCBI
T2T-CHM13v2.0617,153,424 - 17,165,933 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153020   ⟹   NP_694565
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,282,701 - 17,293,871 (+)NCBI
GRCh37617,281,739 - 17,294,102 (+)NCBI
Build 36617,390,911 - 17,402,052 (+)NCBI Archive
Celera618,520,103 - 18,532,397 (+)RGD
HuRef617,228,106 - 17,240,362 (+)RGD
CHM1_1617,285,417 - 17,296,587 (+)NCBI
T2T-CHM13v2.0617,154,761 - 17,165,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514387   ⟹   XP_011512689
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,281,361 - 17,293,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514388   ⟹   XP_011512690
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,282,805 - 17,293,871 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047418369   ⟹   XP_047274325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,282,805 - 17,293,871 (+)NCBI
RefSeq Acc Id: XM_054354627   ⟹   XP_054210602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0617,153,424 - 17,165,937 (+)NCBI
RefSeq Acc Id: XM_054354628   ⟹   XP_054210603
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0617,154,865 - 17,165,933 (+)NCBI
RefSeq Acc Id: XM_054354629   ⟹   XP_054210604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0617,154,865 - 17,165,933 (+)NCBI
RefSeq Acc Id: NP_001137414   ⟸   NM_001143942
- Peptide Label: isoform 1
- UniProtKB: Q8N9D3 (UniProtKB/Swiss-Prot),   Q6QDA4 (UniProtKB/Swiss-Prot),   E9PAY4 (UniProtKB/Swiss-Prot),   Q96NI3 (UniProtKB/Swiss-Prot),   Q9BX46 (UniProtKB/Swiss-Prot),   A8KAI7 (UniProtKB/TrEMBL),   H0Y8S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001137413   ⟸   NM_001143941
- Peptide Label: isoform 3
- UniProtKB: H0Y8S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_694565   ⟸   NM_153020
- Peptide Label: isoform 2
- UniProtKB: H0Y8S7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011512689   ⟸   XM_011514387
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011512690   ⟸   XM_011514388
- Peptide Label: isoform X2
- UniProtKB: B7Z6B7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000396898   ⟸   ENST00000425446
Ensembl Acc Id: ENSP00000421971   ⟸   ENST00000503965
Ensembl Acc Id: ENSP00000426222   ⟸   ENST00000509686
Ensembl Acc Id: ENSP00000368341   ⟸   ENST00000379052
Ensembl Acc Id: ENSP00000319551   ⟸   ENST00000318204
RefSeq Acc Id: XP_047274325   ⟸   XM_047418369
- Peptide Label: isoform X3
- UniProtKB: B7Z6B4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054210602   ⟸   XM_054354627
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054210603   ⟸   XM_054354628
- Peptide Label: isoform X2
- UniProtKB: B7Z6B7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054210604   ⟸   XM_054354629
- Peptide Label: isoform X3
- UniProtKB: B7Z6B4 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9BX46-F1-model_v2 AlphaFold Q9BX46 1-236 view protein structure

Promoters
RGD ID:6872120
Promoter ID:EPDNEW_H9225
Type:initiation region
Name:RBM24_2
Description:RNA binding motif protein 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9227  EPDNEW_H9226  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,281,014 - 17,281,074EPDNEW
RGD ID:6872156
Promoter ID:EPDNEW_H9226
Type:initiation region
Name:RBM24_3
Description:RNA binding motif protein 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9225  EPDNEW_H9227  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,281,361 - 17,281,421EPDNEW
RGD ID:6872124
Promoter ID:EPDNEW_H9227
Type:multiple initiation site
Name:RBM24_1
Description:RNA binding motif protein 24
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9225  EPDNEW_H9226  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38617,282,606 - 17,282,666EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21539 AgrOrtholog
COSMIC RBM24 COSMIC
Ensembl Genes ENSG00000112183 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000318204 ENTREZGENE
  ENST00000318204.5 UniProtKB/Swiss-Prot
  ENST00000379052 ENTREZGENE
  ENST00000379052.10 UniProtKB/Swiss-Prot
  ENST00000425446 ENTREZGENE
  ENST00000425446.6 UniProtKB/Swiss-Prot
  ENST00000503965.5 UniProtKB/TrEMBL
  ENST00000509686.5 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000112183 GTEx
HGNC ID HGNC:21539 ENTREZGENE
Human Proteome Map RBM24 Human Proteome Map
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-binding_reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:221662 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 221662 ENTREZGENE
OMIM 617603 OMIM
PANTHER GEO13361P1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134964569 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8KAI7 ENTREZGENE, UniProtKB/TrEMBL
  B7Z6B4 ENTREZGENE, UniProtKB/TrEMBL
  B7Z6B7 ENTREZGENE, UniProtKB/TrEMBL
  E9PAY4 ENTREZGENE
  H0Y8S7 ENTREZGENE, UniProtKB/TrEMBL
  H0YA61_HUMAN UniProtKB/TrEMBL
  Q6QDA4 ENTREZGENE
  Q8N9D3 ENTREZGENE
  Q96NI3 ENTREZGENE
  Q9BX46 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9PAY4 UniProtKB/Swiss-Prot
  Q6QDA4 UniProtKB/Swiss-Prot
  Q8N9D3 UniProtKB/Swiss-Prot
  Q96NI3 UniProtKB/Swiss-Prot