Eya1 (EYA transcriptional coactivator and phosphatase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Eya1 (EYA transcriptional coactivator and phosphatase 1) Mus musculus
Analyze
Symbol: Eya1
Name: EYA transcriptional coactivator and phosphatase 1
RGD ID: 1317055
MGI Page MGI
Description: Enables RNA binding activity and protein tyrosine phosphatase activity. Involved in mesodermal cell fate specification; positive regulation of DNA-templated transcription; and protein sumoylation. Acts upstream of or within several processes, including embryonic organ morphogenesis; epithelial cell differentiation; and positive regulation of cell population proliferation. Located in cytoplasm and nucleus. Part of protein-DNA complex. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and sensory organ. Used to study branchiootorenal syndrome. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b; bor; eyes absent 1 homolog; eyes absent homolog 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,239,177 - 14,381,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,239,178 - 14,380,459 (-)EnsemblGRCm39 Ensembl
GRCm38114,168,953 - 14,311,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,168,954 - 14,310,235 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,159,039 - 14,300,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,154,172 - 14,295,413 (-)NCBIMGSCv36mm8
Celera114,109,695 - 14,251,151 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
animal organ morphogenesis  (IMP)
aorta morphogenesis  (IMP)
branching involved in ureteric bud morphogenesis  (IGI)
cell differentiation  (IBA)
cell fate commitment  (IMP)
chromatin organization  (IEA)
cochlea morphogenesis  (IMP)
columnar/cuboidal epithelial cell differentiation  (IGI)
DNA damage response  (IEA)
DNA repair  (IEA)
double-strand break repair  (ISO)
embryonic skeletal system morphogenesis  (IMP)
epithelial cell proliferation  (IMP)
establishment of mitotic spindle orientation  (IGI,IMP)
establishment or maintenance of apical/basal cell polarity  (IMP)
extrinsic apoptotic signaling pathway in absence of ligand  (IMP)
inner ear morphogenesis  (IGI,IMP)
lung epithelial cell differentiation  (IGI)
mesodermal cell fate specification  (IDA)
metanephros development  (IMP)
middle ear morphogenesis  (IMP)
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand  (IBA,IMP)
neuron fate specification  (IGI)
otic vesicle development  (IGI)
otic vesicle morphogenesis  (IMP)
outer ear morphogenesis  (IMP)
outflow tract morphogenesis  (IMP)
pattern specification process  (IGI,IMP)
pharyngeal system development  (IMP)
positive regulation of DNA repair  (IBA,ISO)
positive regulation of DNA-templated transcription  (IDA)
positive regulation of epithelial cell proliferation  (IMP)
positive regulation of Notch signaling pathway  (IMP)
positive regulation of secondary heart field cardioblast proliferation  (IGI)
positive regulation of transcription by RNA polymerase II  (IGI)
protein localization  (IMP)
protein sumoylation  (IDA)
regulation of neuron differentiation  (IGI,IMP)
response to ionizing radiation  (ISO)
semicircular canal morphogenesis  (IMP)
striated muscle tissue development  (IGI)
ureteric bud development  (IGI)

Cellular Component
cytoplasm  (IDA,ISO)
nuclear body  (ISO)
nucleoplasm  (ISO,TAS)
nucleus  (IBA,IDA,ISO)
protein-containing complex  (IDA)
protein-DNA complex  (IDA)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aortic arch morphology  (IAGP)
abnormal basisphenoid bone morphology  (IAGP)
abnormal cardiac outflow tract development  (IAGP)
abnormal cardiovascular development  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal cochlear ganglion morphology  (IAGP)
abnormal cochlear hair cell morphology  (IAGP)
abnormal common carotid artery morphology  (IAGP)
abnormal common crus morphology  (IAGP)
abnormal craniofacial development  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal endolymphatic duct morphology  (IAGP)
abnormal epaxial muscle morphology  (IAGP)
abnormal external auditory canal morphology  (IAGP)
abnormal extraocular muscle morphology  (IAGP)
abnormal facial nerve morphology  (IAGP)
abnormal first pharyngeal pouch morphology  (IAGP)
abnormal geniculate ganglion morphology  (IAGP)
abnormal hyoid bone lesser horn morphology  (IAGP)
abnormal hyoid bone morphology  (IAGP)
abnormal incus morphology  (IAGP)
abnormal inner ear morphology  (IAGP)
abnormal ischium morphology  (IAGP)
abnormal jaw morphology  (IAGP)
abnormal lateral semicircular canal morphology  (IAGP)
abnormal middle ear ossicle morphology  (IAGP)
abnormal orientation of cochlear hair cell stereociliary bundles  (IAGP)
abnormal otic vesicle development  (IAGP)
abnormal palate development  (IAGP)
abnormal posterior semicircular canal morphology  (IAGP)
abnormal pterygoid process morphology  (IAGP)
abnormal pubis morphology  (IAGP)
abnormal pulmonary artery morphology  (IAGP)
abnormal semicircular canal ampulla morphology  (IAGP)
abnormal semicircular canal morphology  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal stapes morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal temporal bone morphology  (IAGP)
abnormal thyroid cartilage morphology  (IAGP)
abnormal tympanic membrane morphology  (IAGP)
abnormal ureteric bud morphology  (IAGP)
abnormal utricle morphology  (IAGP)
abnormal vestibular labyrinth morphology  (IAGP)
abnormal vestibular saccule morphology  (IAGP)
abnormal vestibulocochlear nerve morphology  (IAGP)
abnormal zygomatic bone morphology  (IAGP)
absent auditory bulla  (IAGP)
absent cochlea  (IAGP)
absent endolymphatic duct  (IAGP)
absent external auditory canal  (IAGP)
absent hypaxial muscle  (IAGP)
absent inner ear  (IAGP)
absent inner ear vestibule  (IAGP)
absent kidney  (IAGP)
absent lateral semicircular canal  (IAGP)
absent malleus processus brevis  (IAGP)
absent maxilla  (IAGP)
absent organ of Corti  (IAGP)
absent outer ear  (IAGP)
absent parathyroid glands  (IAGP)
absent petrosal ganglion  (IAGP)
absent posterior semicircular canal  (IAGP)
absent premaxilla  (IAGP)
absent stapes  (IAGP)
absent thyroid gland isthmus  (IAGP)
absent tympanic cavity  (IAGP)
absent ureter  (IAGP)
absent ureteric bud  (IAGP)
absent vestibular ganglion  (IAGP)
absent vestibular saccule  (IAGP)
anotia  (IAGP)
athymia  (IAGP)
cervical vertebral fusion  (IAGP)
circling  (IAGP)
cleft secondary palate  (IAGP)
cochlear ganglion degeneration  (IAGP)
conductive hearing loss  (IAGP)
deafness  (IAGP)
decreased cell proliferation  (IAGP)
decreased cochlea coiling  (IAGP)
decreased cochlear inner hair cell number  (IAGP)
decreased cochlear outer hair cell number  (IAGP)
decreased lateral semicircular canal size  (IAGP)
decreased maxillary shelf size  (IAGP)
decreased otic epithelial cell proliferation  (IAGP)
decreased outer hair cell stereocilia number  (IAGP)
decreased palatine bone horizontal plate size  (IAGP)
decreased posterior semicircular canal size  (IAGP)
decreased prepulse inhibition  (IEA)
decreased superior semicircular canal size  (IAGP)
decreased tympanic ring size  (IAGP)
decreased vestibular hair cell number  (IAGP)
double outlet right ventricle  (IAGP)
eyelids open at birth  (IAGP)
facial muscle hypoplasia  (IAGP)
female infertility  (IAGP)
fusion of middle ear ossicles  (IAGP)
head bobbing  (IAGP)
impaired branching involved in ureteric bud morphogenesis  (IAGP)
increased apoptosis  (IAGP)
increased blood urea nitrogen level  (IAGP)
increased cochlear inner hair cell number  (IAGP)
increased cochlear outer hair cell number  (IAGP)
increased metanephric mesenchyme apoptosis  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased otic epithelial cell apoptosis  (IAGP)
interrupted aortic arch  (IAGP)
interrupted aortic arch, type b  (IAGP)
large nasal septum  (IAGP)
mandible hypoplasia  (IAGP)
microcephaly  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
persistent truncus arteriosus  (IAGP)
persistent ultimobranchial bodies  (IAGP)
pituitary gland hypoplasia  (IAGP)
preauricular pit  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
renal hypoplasia  (IAGP)
retroesophageal right subclavian artery  (IAGP)
rib fusion  (IAGP)
right aortic arch  (IAGP)
short endolymphatic duct  (IAGP)
single kidney  (IAGP)
small cranium  (IAGP)
small otic vesicle  (IAGP)
small pituitary gland  (IAGP)
small vestibular saccule  (IAGP)
thyroid gland hypoplasia  (IAGP)
tongue muscle hypoplasia  (IAGP)
vascular ring  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1. Abdelhak S, etal., Hum Mol Genet. 1997 Dec;6(13):2247-55.
2. Expression of Eya1 and Six1 is decreased in distal airways of rats with experimental pulmonary hypoplasia. Friedmacher F, etal., J Pediatr Surg. 2014 Feb;49(2):301-4. doi: 10.1016/j.jpedsurg.2013.11.043. Epub 2013 Nov 18.
3. A Tbx1-Six1/Eya1-Fgf8 genetic pathway controls mammalian cardiovascular and craniofacial morphogenesis. Guo C, etal., J Clin Invest. 2011 Apr;121(4):1585-95. doi: 10.1172/JCI44630.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. EYA1 and SIX1 gene mutations in Japanese patients with branchio-oto-renal (BOR) syndrome and related conditions. Okada M, etal., Pediatr Nephrol. 2006 Apr;21(4):475-81. Epub 2006 Feb 21.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Push back to respond better: regulatory inhibition of the DNA double-strand break response. Panier S and Durocher D, Nat Rev Mol Cell Biol. 2013 Oct;14(10):661-72. doi: 10.1038/nrm3659. Epub 2013 Sep 4.
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Branchio-oto-renal syndrome: detection of EYA1 and SIX1 mutations in five out of six Danish families by combining linkage, MLPA and sequencing analyses. Sanggaard KM, etal., Eur J Hum Genet. 2007 Nov;15(11):1121-31. Epub 2007 Jul 18.
14. Muscle-fiber transdifferentiation in an experimental model of respiratory chain myopathy. Venhoff N, etal., Arthritis Res Ther. 2012 Oct 29;14(5):R233.
Additional References at PubMed
PMID:9006082   PMID:9020840   PMID:9195991   PMID:9342347   PMID:9817915   PMID:9851982   PMID:9853969   PMID:9887327   PMID:9915577   PMID:10072433   PMID:10349636   PMID:10471511  
PMID:10490620   PMID:10603348   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11688560   PMID:11700312   PMID:11734542   PMID:11804780   PMID:11950062   PMID:12050119   PMID:12070080  
PMID:12072567   PMID:12477932   PMID:12642503   PMID:12729564   PMID:12783782   PMID:12874121   PMID:12913075   PMID:14517553   PMID:14628042   PMID:14628052   PMID:14695375   PMID:14973294  
PMID:15130495   PMID:15141091   PMID:15226428   PMID:15242798   PMID:15492887   PMID:15496442   PMID:15499560   PMID:15817220   PMID:15905075   PMID:16018995   PMID:16024294   PMID:16054034  
PMID:16109395   PMID:16141072   PMID:16141073   PMID:16319112   PMID:16319116   PMID:16442091   PMID:16488112   PMID:16530750   PMID:16790474   PMID:16797546   PMID:16870172   PMID:16916509  
PMID:16990542   PMID:17036046   PMID:17098221   PMID:17382312   PMID:17537792   PMID:17785448   PMID:18219393   PMID:18287559   PMID:18424556   PMID:18485340   PMID:18678597   PMID:18759246  
PMID:18787044   PMID:18816442   PMID:18836772   PMID:19027001   PMID:19234442   PMID:19235731   PMID:19591821   PMID:19715689   PMID:19716816   PMID:19877281   PMID:20040500   PMID:20110314  
PMID:20439720   PMID:20503367   PMID:20589882   PMID:20589901   PMID:20727173   PMID:20736290   PMID:20843830   PMID:20869363   PMID:20956555   PMID:21128305   PMID:21129374   PMID:21267068  
PMID:21281623   PMID:21350016   PMID:21386911   PMID:21533152   PMID:21858105   PMID:21873635   PMID:21936910   PMID:21963425   PMID:21968101   PMID:22182523   PMID:22267199   PMID:22340499  
PMID:22510988   PMID:22511595   PMID:22513373   PMID:23263983   PMID:23614009   PMID:23636126   PMID:23895934   PMID:23974041   PMID:24067355   PMID:24194600   PMID:24301466   PMID:24378336  
PMID:24440154   PMID:24489909   PMID:24550112   PMID:24598167   PMID:24752894   PMID:25458011   PMID:25587709   PMID:25617721   PMID:25641696   PMID:25803581   PMID:25816987   PMID:25859222  
PMID:25903664   PMID:26116176   PMID:26387953   PMID:26550799   PMID:27820600   PMID:28346476   PMID:28455376   PMID:28492243   PMID:28892484   PMID:29140246   PMID:29509905   PMID:30377232  
PMID:30561639   PMID:30635573   PMID:31142573   PMID:31351040   PMID:31488567   PMID:31956913   PMID:31988190   PMID:32715478   PMID:32988586   PMID:33298461   PMID:33472197   PMID:33723076  
PMID:33795231   PMID:34321999   PMID:34716243   PMID:34861428   PMID:35178390   PMID:36130284   PMID:36205075   PMID:36288084   PMID:36521641   PMID:36960826   PMID:37181748   PMID:38355793  
PMID:38692273  


Genomics

Comparative Map Data
Eya1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,239,177 - 14,381,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,239,178 - 14,380,459 (-)EnsemblGRCm39 Ensembl
GRCm38114,168,953 - 14,311,035 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,168,954 - 14,310,235 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,159,039 - 14,300,280 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,154,172 - 14,295,413 (-)NCBIMGSCv36mm8
Celera114,109,695 - 14,251,151 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map14.31NCBI
EYA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38871,197,433 - 71,548,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl871,197,433 - 71,592,025 (-)EnsemblGRCh38hg38GRCh38
GRCh37872,109,668 - 72,460,329 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36872,272,222 - 72,437,021 (-)NCBINCBI36Build 36hg18NCBI36
Build 34872,272,221 - 72,437,021NCBI
Celera868,106,627 - 68,271,433 (-)NCBICelera
Cytogenetic Map8q13.3NCBI
HuRef867,603,371 - 67,768,504 (-)NCBIHuRef
CHM1_1872,164,260 - 72,329,031 (-)NCBICHM1_1
T2T-CHM13v2.0871,626,530 - 71,983,583 (-)NCBIT2T-CHM13v2.0
Eya1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr859,646,599 - 9,884,609 (+)NCBIGRCr8
mRatBN7.254,863,501 - 5,101,483 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl54,955,543 - 5,101,483 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.054,275,728 - 4,495,525 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl54,373,626 - 4,513,142 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.054,252,745 - 4,487,853 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.454,132,825 - 4,276,837 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera54,454,356 - 4,554,997 (+)NCBICelera
Celera54,581,829 - 4,692,568 (+)NCBICelera
Cytogenetic Map5q11NCBI
Eya1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554448,495,530 - 8,655,100 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554448,336,071 - 8,655,041 (+)NCBIChiLan1.0ChiLan1.0
EYA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2786,938,623 - 87,280,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1862,568,011 - 62,730,070 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0867,728,057 - 68,060,069 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1869,387,769 - 69,551,829 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl869,387,769 - 69,551,829 (-)Ensemblpanpan1.1panPan2
EYA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12920,176,306 - 20,595,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2920,177,014 - 20,525,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2920,436,698 - 20,855,121 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02920,275,380 - 20,693,971 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2920,274,650 - 20,771,147 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12920,325,900 - 20,743,158 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02920,378,421 - 20,796,035 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02920,660,077 - 21,078,705 (-)NCBIUU_Cfam_GSD_1.0
Eya1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530358,739,647 - 59,053,061 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936648395,524 - 546,729 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936648395,526 - 546,705 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EYA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl463,970,807 - 64,328,105 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1463,970,939 - 64,328,107 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2469,915,648 - 69,943,761 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EYA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1866,902,961 - 67,238,149 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl866,902,972 - 67,060,567 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603974,161,305 - 74,511,047 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eya1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474419,782,790 - 19,977,335 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474419,782,174 - 19,975,496 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Eya1
5062 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1689
Count of miRNA genes:407
Interacting mature miRNAs:458
Transcripts:ENSMUST00000027066, ENSMUST00000080664, ENSMUST00000168081
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
38501065Nociq4_mnociceptive sensitivity QTL 4 (mouse)11202506915142285Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse

Markers in Region
RH131160  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,169,052 - 14,169,275UniSTSGRCm38
MGSCv37114,159,133 - 14,159,356UniSTSGRCm37
Celera114,109,789 - 14,110,012UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
C86010  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,191,748 - 14,191,860UniSTSGRCm38
MGSCv37114,181,829 - 14,181,941UniSTSGRCm37
Celera114,132,665 - 14,132,777UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
Whitehead/MRC_RH1243.62UniSTS
Eya1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,252,590 - 14,253,046UniSTSGRCm38
Celera114,193,545 - 14,194,001UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
cM Map110.4UniSTS
35.MMHAP50FLD5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,274,992 - 14,275,152UniSTSGRCm38
MGSCv37114,265,073 - 14,265,233UniSTSGRCm37
Celera114,215,872 - 14,216,032UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
Whitehead_YAC1 UniSTS
D1Mit430  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,281,275 - 14,281,387UniSTSGRCm38
MGSCv37114,271,356 - 14,271,468UniSTSGRCm37
Celera114,222,167 - 14,222,283UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.0UniSTS
Whitehead Genetic16.6UniSTS
Whitehead/MRC_RH1249.16UniSTS
Whitehead_YAC1 UniSTS
U61110  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38114,170,827 - 14,170,921UniSTSGRCm38
MGSCv37114,160,908 - 14,161,002UniSTSGRCm37
Celera114,111,564 - 14,111,658UniSTS
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
Whitehead/MRC_RH1240.69UniSTS
Eya1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1A3UniSTS
cM Map110.4UniSTS
Eya1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1A3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001310459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001402662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006495452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011238346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF097544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ007995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U61110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y10263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000027066   ⟹   ENSMUSP00000027066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,239,178 - 14,380,424 (-)Ensembl
GRCm38.p6 Ensembl114,168,954 - 14,310,200 (-)Ensembl
RefSeq Acc Id: ENSMUST00000080664   ⟹   ENSMUSP00000079493
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,239,890 - 14,380,343 (-)Ensembl
GRCm38.p6 Ensembl114,169,666 - 14,310,119 (-)Ensembl
RefSeq Acc Id: ENSMUST00000168081   ⟹   ENSMUSP00000126383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,239,182 - 14,380,459 (-)Ensembl
GRCm38.p6 Ensembl114,168,958 - 14,310,235 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185329
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,371,428 - 14,380,275 (-)Ensembl
GRCm38.p6 Ensembl114,301,204 - 14,310,051 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185453   ⟹   ENSMUSP00000141072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,340,931 - 14,374,852 (-)Ensembl
GRCm38.p6 Ensembl114,270,707 - 14,304,628 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187790   ⟹   ENSMUSP00000139542
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,340,999 - 14,380,060 (-)Ensembl
GRCm38.p6 Ensembl114,270,775 - 14,309,836 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188857   ⟹   ENSMUSP00000140171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,322,824 - 14,374,843 (-)Ensembl
GRCm38.p6 Ensembl114,252,600 - 14,304,619 (-)Ensembl
RefSeq Acc Id: ENSMUST00000189526   ⟹   ENSMUSP00000140619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,278,150 - 14,301,716 (-)Ensembl
GRCm38.p6 Ensembl114,207,926 - 14,231,492 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190337   ⟹   ENSMUSP00000141112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl114,240,867 - 14,374,794 (-)Ensembl
GRCm38.p6 Ensembl114,170,643 - 14,304,570 (-)Ensembl
RefSeq Acc Id: NM_001252192   ⟹   NP_001239121
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,380,273 (-)NCBI
GRCm38114,168,958 - 14,310,199 (-)NCBI
Celera114,109,695 - 14,251,151 (-)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001310459   ⟹   NP_001297388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,380,273 (-)NCBI
GRCm38114,168,958 - 14,310,199 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001402659   ⟹   NP_001389588
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,380,273 (-)NCBI
RefSeq Acc Id: NM_001402660   ⟹   NP_001389589
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,380,273 (-)NCBI
RefSeq Acc Id: NM_001402661   ⟹   NP_001389590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,374,869 (-)NCBI
RefSeq Acc Id: NM_001402662   ⟹   NP_001389591
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,278,150 - 14,380,273 (-)NCBI
RefSeq Acc Id: NM_010164   ⟹   NP_034294
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,380,273 (-)NCBI
GRCm38114,168,958 - 14,310,199 (-)NCBI
MGSCv37114,159,039 - 14,300,280 (-)RGD
Celera114,109,695 - 14,251,151 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006495446   ⟹   XP_006495509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,375,172 (-)NCBI
GRCm38114,168,953 - 14,304,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006495452   ⟹   XP_006495515
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,381,259 (-)NCBI
GRCm38114,168,953 - 14,311,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238346   ⟹   XP_011236648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,375,174 (-)NCBI
GRCm38114,168,953 - 14,305,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315348   ⟹   XP_017170837
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,375,171 (-)NCBI
GRCm38114,168,953 - 14,304,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315381   ⟹   XP_017170870
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,375,174 (-)NCBI
GRCm38114,168,953 - 14,305,655 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315414   ⟹   XP_017170903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,381,259 (-)NCBI
GRCm38114,168,953 - 14,311,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247470   ⟹   XP_030103330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,375,172 (-)NCBI
GRCm38114,168,953 - 14,304,970 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159644   ⟹   XP_036015537
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,253,445 - 14,381,259 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159662   ⟹   XP_036015555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,344,827 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036159675   ⟹   XP_036015568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,278,155 - 14,381,259 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780756
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39114,239,177 - 14,381,259 (-)NCBI
GRCm38114,168,953 - 14,311,035 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001239121 (Get FASTA)   NCBI Sequence Viewer  
  NP_001297388 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389589 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389591 (Get FASTA)   NCBI Sequence Viewer  
  NP_034294 (Get FASTA)   NCBI Sequence Viewer  
  XP_006495509 (Get FASTA)   NCBI Sequence Viewer  
  XP_006495515 (Get FASTA)   NCBI Sequence Viewer  
  XP_011236648 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170837 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170870 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170903 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103330 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015537 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015555 (Get FASTA)   NCBI Sequence Viewer  
  XP_036015568 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB48017 (Get FASTA)   NCBI Sequence Viewer  
  AAD19355 (Get FASTA)   NCBI Sequence Viewer  
  AAH60260 (Get FASTA)   NCBI Sequence Viewer  
  AAH66860 (Get FASTA)   NCBI Sequence Viewer  
  BAC31251 (Get FASTA)   NCBI Sequence Viewer  
  BAE36732 (Get FASTA)   NCBI Sequence Viewer  
  CAA07818 (Get FASTA)   NCBI Sequence Viewer  
  CAA71312 (Get FASTA)   NCBI Sequence Viewer  
  EDL14327 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000027066
  ENSMUSP00000027066.7
  ENSMUSP00000079493
  ENSMUSP00000079493.9
  ENSMUSP00000126383
  ENSMUSP00000126383.4
  ENSMUSP00000139542.2
  ENSMUSP00000140171.2
  ENSMUSP00000140619.2
  ENSMUSP00000141072.2
  ENSMUSP00000141112
  ENSMUSP00000141112.2
GenBank Protein P97767 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034294   ⟸   NM_010164
- Peptide Label: isoform 1
- UniProtKB: F6YST4 (UniProtKB/TrEMBL),   Q6PAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239121   ⟸   NM_001252192
- Peptide Label: isoform 2
- UniProtKB: Q8C9D0 (UniProtKB/TrEMBL),   F7B3B8 (UniProtKB/TrEMBL),   Q6NXW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495515   ⟸   XM_006495452
- Peptide Label: isoform X5
- UniProtKB: Q6NXW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006495509   ⟸   XM_006495446
- Peptide Label: isoform X1
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011236648   ⟸   XM_011238346
- Peptide Label: isoform X5
- UniProtKB: Q6NXW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170903   ⟸   XM_017315414
- Peptide Label: isoform X8
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170870   ⟸   XM_017315381
- Peptide Label: isoform X5
- UniProtKB: Q6NXW1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170837   ⟸   XM_017315348
- Peptide Label: isoform X3
- UniProtKB: G5E864 (UniProtKB/Swiss-Prot),   O08818 (UniProtKB/Swiss-Prot),   P97767 (UniProtKB/Swiss-Prot),   Q6PAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001297388   ⟸   NM_001310459
- Peptide Label: isoform 3
- UniProtKB: G5E864 (UniProtKB/Swiss-Prot),   O08818 (UniProtKB/Swiss-Prot),   P97767 (UniProtKB/Swiss-Prot),   Q6PAJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030103330   ⟸   XM_030247470
- Peptide Label: isoform X1
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000027066   ⟸   ENSMUST00000027066
RefSeq Acc Id: ENSMUSP00000141072   ⟸   ENSMUST00000185453
RefSeq Acc Id: ENSMUSP00000141112   ⟸   ENSMUST00000190337
RefSeq Acc Id: ENSMUSP00000140171   ⟸   ENSMUST00000188857
RefSeq Acc Id: ENSMUSP00000079493   ⟸   ENSMUST00000080664
RefSeq Acc Id: ENSMUSP00000139542   ⟸   ENSMUST00000187790
RefSeq Acc Id: ENSMUSP00000126383   ⟸   ENSMUST00000168081
RefSeq Acc Id: ENSMUSP00000140619   ⟸   ENSMUST00000189526
RefSeq Acc Id: XP_036015555   ⟸   XM_036159662
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036015537   ⟸   XM_036159644
- Peptide Label: isoform X6
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036015568   ⟸   XM_036159675
- Peptide Label: isoform X10
RefSeq Acc Id: NP_001389589   ⟸   NM_001402660
- Peptide Label: isoform 5
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389588   ⟸   NM_001402659
- Peptide Label: isoform 4
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389590   ⟸   NM_001402661
- Peptide Label: isoform 6
- UniProtKB: Q6PAJ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389591   ⟸   NM_001402662
- Peptide Label: isoform 7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P97767-F1-model_v2 AlphaFold P97767 1-591 view protein structure

Promoters
RGD ID:6817695
Promoter ID:MM_KWN:160
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung,   MEF_B6
Transcripts:ENSMUST00000027066,   ENSMUST00000080664,   NM_010164,   UC007AIY.1,   UC007AIZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36114,299,764 - 14,300,264 (-)MPROMDB
RGD ID:6873210
Promoter ID:EPDNEW_M56
Type:initiation region
Name:Eya1_1
Description:Mus musculus EYA transcriptional coactivator and phosphatase1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38114,304,632 - 14,304,692EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109344 AgrOrtholog
Ensembl Genes ENSMUSG00000025932 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027066 ENTREZGENE
  ENSMUST00000027066.13 UniProtKB/Swiss-Prot
  ENSMUST00000080664 ENTREZGENE
  ENSMUST00000080664.14 UniProtKB/TrEMBL
  ENSMUST00000168081 ENTREZGENE
  ENSMUST00000168081.9 UniProtKB/TrEMBL
  ENSMUST00000185453.7 UniProtKB/TrEMBL
  ENSMUST00000187790.2 UniProtKB/TrEMBL
  ENSMUST00000188857.7 UniProtKB/TrEMBL
  ENSMUST00000189526.2 UniProtKB/TrEMBL
  ENSMUST00000190337 ENTREZGENE
  ENSMUST00000190337.7 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.12350 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EYA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EYA_dom_metazoan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EYA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EYA_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14048 UniProtKB/Swiss-Prot
MGD MGI:109344 ENTREZGENE
NCBI Gene 14048 ENTREZGENE
PANTHER PTHR10190 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10190:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Eya1 PhenoGen
UniProt A0A087WNY3_MOUSE UniProtKB/TrEMBL
  A0A087WQF4_MOUSE UniProtKB/TrEMBL
  A0A087WRG6_MOUSE UniProtKB/TrEMBL
  A0A087WSJ4_MOUSE UniProtKB/TrEMBL
  EYA1_MOUSE UniProtKB/Swiss-Prot
  F6YST4 ENTREZGENE, UniProtKB/TrEMBL
  F7B3B8 ENTREZGENE
  G5E864 ENTREZGENE
  O08818 ENTREZGENE
  P97767 ENTREZGENE
  Q3TSE3_MOUSE UniProtKB/TrEMBL
  Q6NXW1 ENTREZGENE, UniProtKB/TrEMBL
  Q6PAJ8 ENTREZGENE, UniProtKB/TrEMBL
  Q8C9D0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F7B3B8 UniProtKB/TrEMBL
  G5E864 UniProtKB/Swiss-Prot
  O08818 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-29 Eya1  EYA transcriptional coactivator and phosphatase 1    eyes absent 1 homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED