Cavin1 (caveolae associated 1) - Rat Genome Database

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Gene: Cavin1 (caveolae associated 1) Mus musculus
Analyze
Symbol: Cavin1
Name: caveolae associated 1
RGD ID: 1317018
MGI Page MGI
Description: Enables rRNA primary transcript binding activity. Involved in DNA-templated transcription; positive regulation of cell motility; and protein secretion. Located in caveola; endoplasmic reticulum; and nucleus. Is expressed in several structures, including central nervous system; genitourinary system; head mesenchyme; and sensory organ. Used to study congenital generalized lipodystrophy type 4 and pulmonary hypertension. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 4. Orthologous to human CAVIN1 (caveolae associated protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310075E07Rik; AW546441; C; cav; Cav-p60; caveolae-associated protein 1; Cavin; cavin-1; MGC118550; polymerase I and transcript release factor; Pt; ptrf
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,847,562 - 100,861,443 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,847,559 - 100,861,713 (-)EnsemblGRCm39 Ensembl
GRCm3811100,956,736 - 100,970,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,956,733 - 100,970,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,818,050 - 100,831,931 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,772,826 - 100,786,707 (-)NCBIMGSCv36mm8
Celera11112,252,831 - 112,266,712 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP)
alpha-Zearalanol  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
Brodifacoum  (ISO)
butanal  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
choline  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
fenamidone  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
hydrogen peroxide  (EXP,ISO)
isotretinoin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
monocrotaline  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
Nutlin-3  (ISO)
paracetamol  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
quercetin  (ISO)
reactive oxygen species  (EXP)
rimonabant  (EXP)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
thiram  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. RNA polymerase I termination: Where is the end? Nemeth A, etal., Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):306-17. doi: 10.1016/j.bbagrm.2012.10.007. Epub 2012 Oct 23.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9582279   PMID:10349636   PMID:10589839   PMID:10727401   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11139612   PMID:11161808   PMID:11217851   PMID:12466851   PMID:12477932  
PMID:14610273   PMID:15242332   PMID:15489334   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17026959   PMID:17500595   PMID:17609113   PMID:18191225   PMID:18287559  
PMID:18840361   PMID:19546242   PMID:20059953   PMID:21267068   PMID:21282370   PMID:21343302   PMID:21677750   PMID:21858045   PMID:21873635   PMID:22403691   PMID:22643325   PMID:22673621  
PMID:22718246   PMID:22912783   PMID:22937058   PMID:23634221   PMID:23652019   PMID:23908488   PMID:24013648   PMID:24303100   PMID:24509860   PMID:24658465   PMID:24714042   PMID:24812087  
PMID:24969108   PMID:25514038   PMID:25588833   PMID:26323694   PMID:27528195   PMID:27612189   PMID:27746211   PMID:28289716   PMID:28343262   PMID:28535371   PMID:28559430   PMID:29381831  
PMID:29383478   PMID:29530978   PMID:29869069   PMID:30188967   PMID:30877476   PMID:31126986   PMID:31332168   PMID:32098917   PMID:32325033   PMID:32560809   PMID:32857879   PMID:33087586  
PMID:33568658   PMID:37235502   PMID:37454215   PMID:38182755  


Genomics

Comparative Map Data
Cavin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911100,847,562 - 100,861,443 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11100,847,559 - 100,861,713 (-)EnsemblGRCm39 Ensembl
GRCm3811100,956,736 - 100,970,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11100,956,733 - 100,970,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711100,818,050 - 100,831,931 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611100,772,826 - 100,786,707 (-)NCBIMGSCv36mm8
Celera11112,252,831 - 112,266,712 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1163.95NCBI
CAVIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381742,402,449 - 42,423,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1742,402,449 - 42,423,256 (-)EnsemblGRCh38hg38GRCh38
GRCh371740,554,467 - 40,575,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361737,808,001 - 37,828,800 (-)NCBINCBI36Build 36hg18NCBI36
Build 341737,808,000 - 37,828,800NCBI
Celera1737,209,860 - 37,230,741 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1736,319,636 - 36,340,510 (-)NCBIHuRef
CHM1_11740,790,357 - 40,811,225 (-)NCBICHM1_1
T2T-CHM13v2.01743,259,715 - 43,280,533 (-)NCBIT2T-CHM13v2.0
Cavin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81086,384,401 - 86,398,240 (-)NCBIGRCr8
mRatBN7.21085,884,100 - 85,896,136 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1085,889,036 - 85,896,120 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1090,920,367 - 90,932,349 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01090,398,948 - 90,411,164 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01085,792,119 - 85,804,336 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01088,862,513 - 88,874,495 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1088,860,733 - 88,874,528 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01088,659,595 - 88,671,569 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41089,893,481 - 89,905,343 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11089,907,956 - 89,920,032 (-)NCBI
Celera1084,601,760 - 84,613,734 (-)NCBICelera
Cytogenetic Map10q31NCBI
Cavin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545116,364,915 - 16,374,634 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545116,364,915 - 16,374,523 (-)NCBIChiLan1.0ChiLan1.0
CAVIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21922,561,005 - 22,582,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11724,451,217 - 24,472,071 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01714,892,936 - 14,914,017 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11715,117,091 - 15,136,724 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1715,117,091 - 15,139,223 (+)Ensemblpanpan1.1panPan2
CAVIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1920,511,079 - 20,525,973 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl920,511,089 - 20,524,794 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha919,973,100 - 19,987,993 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0921,230,262 - 21,245,153 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl921,230,250 - 21,245,142 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1920,015,951 - 20,030,833 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0920,281,303 - 20,296,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0920,385,360 - 20,400,256 (+)NCBIUU_Cfam_GSD_1.0
Cavin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560219,860,801 - 19,877,554 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649017,197,585 - 17,200,041 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAVIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1220,372,476 - 20,389,509 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11220,372,476 - 20,390,250 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21220,689,222 - 20,690,171 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CAVIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11663,840,693 - 63,863,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1663,840,859 - 63,863,296 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607734,649,021 - 34,670,341 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cavin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247951,624,373 - 1,634,292 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247951,624,535 - 1,635,409 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cavin1
322 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1134
Count of miRNA genes:551
Interacting mature miRNAs:689
Transcripts:ENSMUST00000060792, ENSMUST00000132934
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse

Markers in Region
AW546441  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811100,956,743 - 100,956,845UniSTSGRCm38
MGSCv3711100,818,057 - 100,818,159UniSTSGRCm37
Celera11112,252,838 - 112,252,940UniSTS
Cytogenetic Map11DUniSTS
cM Map1160.5UniSTS
Whitehead/MRC_RH111347.03UniSTS
D11Mit250  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811100,961,670 - 100,961,801UniSTSGRCm38
MGSCv3711100,822,984 - 100,823,115UniSTSGRCm37
Celera11112,257,765 - 112,257,896UniSTS
Cytogenetic Map11DUniSTS
cM Map1162.0UniSTS
Whitehead Genetic1163.4UniSTS
D11Mit250.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811100,961,545 - 100,961,727UniSTSGRCm38
MGSCv3711100,822,859 - 100,823,041UniSTSGRCm37
Celera11112,257,640 - 112,257,822UniSTS
Cytogenetic Map11DUniSTS
cM Map1162.0UniSTS
cM Map11 UniSTS
Whitehead_YAC11 UniSTS
Ptrf  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11DUniSTS
cM Map1163.95UniSTS
D11Mit250  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811100,961,770 - 100,961,881UniSTSGRCm38
MGSCv3711100,823,084 - 100,823,195UniSTSGRCm37
Celera11112,257,865 - 112,257,976UniSTS
Cytogenetic Map11DUniSTS
cM Map1162.0UniSTS
cM Map11 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF036249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF458959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL591466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC110698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC116701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY132697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000060792   ⟹   ENSMUSP00000058321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11100,847,559 - 100,861,713 (-)Ensembl
GRCm38.p6 Ensembl11100,956,733 - 100,970,887 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11100,855,233 - 100,861,377 (-)Ensembl
GRCm38.p6 Ensembl11100,964,407 - 100,970,551 (-)Ensembl
RefSeq Acc Id: NM_001359105   ⟹   NP_001346034
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911100,853,597 - 100,861,441 (-)NCBI
GRCm3811100,962,771 - 100,970,615 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008986   ⟹   NP_033012
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911100,847,562 - 100,861,443 (-)NCBI
GRCm3811100,956,736 - 100,970,617 (-)NCBI
MGSCv3711100,818,050 - 100,831,931 (-)RGD
Celera11112,252,831 - 112,266,712 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033012   ⟸   NM_008986
- Peptide Label: isoform 1
- UniProtKB: Q2TAW6 (UniProtKB/Swiss-Prot),   O54724 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001346034   ⟸   NM_001359105
- Peptide Label: isoform 2
- UniProtKB: Q3U4N4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000058321   ⟸   ENSMUST00000060792

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54724-F1-model_v2 AlphaFold O54724 1-392 view protein structure

Promoters
RGD ID:6821675
Promoter ID:MM_KWN:9836
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000100440,   ENSMUST00000100441,   OTTMUST00000004316,   UC007LMS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611100,831,351 - 100,832,907 (-)MPROMDB
RGD ID:8676746
Promoter ID:EPDNEW_M16403
Type:initiation region
Name:Cavin1_1
Description:Mus musculus caveolae associated 1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811100,970,615 - 100,970,675EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277968 AgrOrtholog
Ensembl Genes ENSMUSG00000004044 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000060792 ENTREZGENE
  ENSMUST00000060792.6 UniProtKB/Swiss-Prot
InterPro Cavin_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19285 UniProtKB/Swiss-Prot
MGD MGI:1277968 ENTREZGENE
NCBI Gene 19285 ENTREZGENE
PANTHER PTHR15240 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15240:SF3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PTRF_SDPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cavin1 PhenoGen
UniProt CAVN1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q2TAW6 ENTREZGENE
  Q3TER0_MOUSE UniProtKB/TrEMBL
  Q3U4N4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q2TAW6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-23 Cavin1  caveolae associated 1  Ptrf  polymerase I and transcript release factor  Symbol and/or name change 5135510 APPROVED