Hexb (hexosaminidase B) - Rat Genome Database

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Gene: Hexb (hexosaminidase B) Mus musculus
Analyze
Symbol: Hexb
Name: hexosaminidase B
RGD ID: 1316899
MGI Page MGI
Description: Enables beta-N-acetylhexosaminidase activity and identical protein binding activity. Involved in several processes, including astrocyte cell migration; hyaluronan catabolic process; and proteoglycan catabolic process. Acts upstream of or within several processes, including ganglioside catabolic process; penetration of zona pellucida; and sensory perception of sound. Located in extracellular space; membrane; and secretory granule. Is active in lysosome. Is expressed in several structures, including endocrine gland; eye; genitourinary system; hemolymphoid system; and nervous system. Used to study Sandhoff disease. Human ortholog(s) of this gene implicated in Sandhoff disease and spinal muscular atrophy. Orthologous to human HEXB (hexosaminidase subunit beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-hexosaminidase subunit beta; beta-N-acetylhexosaminidase subunit beta; hexosaminidase subunit B; N-acetyl-beta-glucosaminidase subunit beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391397,312,839 - 97,334,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1397,312,839 - 97,334,865 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381397,176,331 - 97,198,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1397,176,331 - 97,198,357 (-)Ensemblmm10GRCm38
MGSCv371397,946,286 - 97,968,312 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361398,277,106 - 98,298,969 (-)NCBIMGSCv36mm8
Celera13100,809,364 - 100,830,755 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.66NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1,4-dioxane  (EXP)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-tribromophenol  (ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2,6-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
2-Methylaziridine  (ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
ampicillin  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
astemizole  (ISO)
atracurium  (ISO)
atrazine  (ISO)
azithromycin  (ISO)
beauvericin  (ISO)
benzo[a]pyrene  (EXP,ISO)
biphenyl-2-ol  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bitertanol  (ISO)
Brodifacoum  (ISO)
buspirone  (ISO)
butylated hydroxyanisole  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cetirizine  (ISO)
chlordecone  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
clofibric acid  (ISO)
compound 48/80  (ISO)
cupressuflavone  (EXP)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dextromethorphan  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
digitonin  (EXP)
doxorubicin  (ISO)
enniatin  (ISO)
entinostat  (ISO)
ethanol  (EXP)
finasteride  (ISO)
flunarizine  (ISO)
flutamide  (ISO)
folic acid  (EXP)
furan  (ISO)
furfural  (ISO)
gamma-linolenic acid  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hydroxyzine  (ISO)
indometacin  (ISO)
iodixanol  (ISO)
iohexol  (ISO)
ionomycin  (ISO)
iopromide  (ISO)
Ioversol  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
KN-93  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
lipopolysaccharide  (EXP)
metronidazole  (ISO)
Mibefradil  (ISO)
ML-7  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N,O-dimethyltyramine  (ISO)
N-(4-aminobutyl)-5-chloronaphthalene-2-sulfonamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methylnicotinate  (ISO)
N-nitrosodiethylamine  (ISO)
neomycin  (ISO)
nickel dichloride  (ISO)
oxatomide  (ISO)
oxycodone  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP)
prothiofos  (ISO)
pyridaben  (ISO)
pyrimethamine  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sevoflurane  (EXP)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
tetrachloromethane  (EXP,ISO)
tetracycline  (EXP)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vecuronium bromide  (ISO)
Yessotoxin  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal brain morphology  (IAGP)
abnormal CNS glial cell morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal digit morphology  (IAGP)
abnormal efferent ductules of testis morphology  (IAGP)
abnormal epididymis morphology  (IAGP)
abnormal eye morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal gait  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lipid level  (IAGP)
abnormal liver morphology  (IAGP)
abnormal locomotor behavior  (IEA)
abnormal lysosome morphology  (IAGP)
abnormal macrophage morphology  (IAGP)
abnormal mandible morphology  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal myelination  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal neuron morphology  (IAGP)
abnormal posture  (IAGP)
abnormal proximal convoluted tubule morphology  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal renal tubule epithelium morphology  (IAGP)
abnormal rib morphology  (IAGP)
abnormal righting response  (IAGP)
abnormal seizure response to electrical stimulation  (IAGP)
abnormal sexual interaction  (IAGP)
abnormal spinal cord interneuron morphology  (IAGP)
abnormal spinal cord morphology  (IAGP)
abnormal thoracic cage shape  (IAGP)
abnormal trabecular bone morphology  (IAGP)
abnormal tumor necrosis factor level  (IAGP)
abnormal urine homeostasis  (IAGP)
abnormal vacuole morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
ataxia  (IAGP)
bradykinesia  (IAGP)
broad snout  (IAGP)
camptodactyly  (IAGP)
CNS inflammation  (IAGP)
cornea opacity  (IAGP)
deafness  (IAGP)
decreased apoptosis  (IAGP)
decreased circulating fructosamine level  (IEA)
decreased exploration in new environment  (IEA)
decreased length of long bones  (IAGP)
decreased locomotor activity  (IAGP)
decreased total body fat amount  (IAGP)
decreased vertical activity  (IAGP)
enlarged caput epididymis  (IAGP)
enlarged corpus epididymis  (IAGP)
frontal bossing  (IAGP)
hindlimb paralysis  (IAGP)
impaired coordination  (IAGP)
impaired fertilization  (IAGP)
impaired limb coordination  (IAGP)
impaired righting response  (IAGP)
increased circulating alkaline phosphatase level  (IEA)
increased circulating aspartate transaminase level  (IEA)
increased circulating interleukin-4 level  (IAGP)
increased circulating iron level  (IEA)
increased diameter of long bones  (IAGP)
increased epididymis weight  (IAGP)
increased forebrain apoptosis  (IAGP)
increased immunoglobulin level  (IAGP)
increased monocyte cell number  (IEA)
increased urine glycosaminoglycan level  (IAGP)
infertility  (IAGP)
kyphosis  (IAGP)
lethargy  (IAGP)
limb grasping  (IAGP)
microgliosis  (IAGP)
muscle hypertonia  (IAGP)
muscle weakness  (IAGP)
muscular atrophy  (IAGP)
neurodegeneration  (IAGP)
postnatal growth retardation  (IAGP)
premature death  (IAGP)
Purkinje cell degeneration  (IAGP)
seminiferous tubule degeneration  (IAGP)
shortened head  (IAGP)
sporadic seizures  (IAGP)
thrombocytosis  (IEA)
tremors  (IAGP)
weight loss  (IAGP)
wide ribs  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Molecular basis of an adult form of beta-hexosaminidase B deficiency with motor neuron disease. Banerjee P, etal., Biochem Biophys Res Commun. 1991 Nov 27;181(1):108-15.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Structure and distribution of an Alu-type deletion mutation in Sandhoff disease. Neote K, etal., J Clin Invest. 1990 Nov;86(5):1524-31.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1054503   PMID:1535334   PMID:2307475   PMID:2947337   PMID:2971567   PMID:6458607   PMID:7203014   PMID:7550345   PMID:7918686   PMID:7959736   PMID:8147878   PMID:8253842  
PMID:8269854   PMID:8286571   PMID:8566348   PMID:8634145   PMID:8678993   PMID:8789434   PMID:8828042   PMID:8889548   PMID:8896570   PMID:9119362   PMID:9122231   PMID:9184660  
PMID:9223328   PMID:9237263   PMID:9302266   PMID:9417048   PMID:9562524   PMID:9576752   PMID:9584189   PMID:9645704   PMID:9728335   PMID:9774663   PMID:10021458   PMID:10339597  
PMID:10349636   PMID:10591618   PMID:10922068   PMID:11005868   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11707436   PMID:11849560   PMID:11854359   PMID:11919180   PMID:12466851  
PMID:12617783   PMID:12657883   PMID:12756243   PMID:12887594   PMID:12904583   PMID:14610273   PMID:14681479   PMID:14691112   PMID:14722612   PMID:15155903   PMID:15198669   PMID:15539565  
PMID:15748167   PMID:15782199   PMID:16123447   PMID:16141072   PMID:16141073   PMID:16441513   PMID:16456008   PMID:16888648   PMID:16982810   PMID:17372214   PMID:17442056   PMID:17883393  
PMID:18180457   PMID:18424450   PMID:18550711   PMID:18611415   PMID:18657867   PMID:18799693   PMID:19026003   PMID:19033672   PMID:19166507   PMID:19463158   PMID:19603551   PMID:19637231  
PMID:19710420   PMID:19865483   PMID:20374428   PMID:20616152   PMID:20856892   PMID:20864542   PMID:21151498   PMID:21267068   PMID:21598013   PMID:21852247   PMID:21873635   PMID:22451654  
PMID:22496568   PMID:23028353   PMID:23383290   PMID:23727835   PMID:24057669   PMID:24194600   PMID:24441827   PMID:25015817   PMID:25795792   PMID:26467605   PMID:26545928   PMID:26681805  
PMID:27018595   PMID:27453479   PMID:27534441   PMID:27605553   PMID:28007910   PMID:28084424   PMID:28377426   PMID:28575132   PMID:28728022   PMID:29325092   PMID:29514215   PMID:29900534  
PMID:30026035   PMID:30550785   PMID:31340161   PMID:31547903   PMID:31999726   PMID:32325033   PMID:32541832   PMID:33219123   PMID:33555074   PMID:33887203   PMID:34172992   PMID:34201771  
PMID:34321999   PMID:35357926   PMID:35444273   PMID:35482418   PMID:36977586   PMID:37142655   PMID:37635351   PMID:38355793   PMID:38519472   PMID:38961498  


Genomics

Comparative Map Data
Hexb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391397,312,839 - 97,334,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1397,312,839 - 97,334,865 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381397,176,331 - 97,198,357 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1397,176,331 - 97,198,357 (-)Ensemblmm10GRCm38
MGSCv371397,946,286 - 97,968,312 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361398,277,106 - 98,298,969 (-)NCBIMGSCv36mm8
Celera13100,809,364 - 100,830,755 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1350.66NCBI
HEXB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38574,640,023 - 74,721,288 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl574,640,023 - 74,722,647 (+)Ensemblhg38GRCh38
GRCh37573,935,848 - 74,017,113 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36574,016,767 - 74,052,869 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34574,016,766 - 74,052,869NCBI
Celera569,875,759 - 69,911,869 (+)NCBICelera
Cytogenetic Map5q13.3NCBI
HuRef569,185,979 - 69,222,054 (+)NCBIHuRef
CHM1_1573,413,670 - 73,449,974 (+)NCBICHM1_1
T2T-CHM13v2.0575,120,988 - 75,202,190 (+)NCBIT2T-CHM13v2.0
Hexb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8230,218,608 - 30,238,771 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl230,218,608 - 30,238,771 (-)EnsemblGRCr8
mRatBN7.2228,483,997 - 28,504,165 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl228,484,012 - 28,504,223 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx235,537,922 - 35,558,126 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0233,632,260 - 33,652,462 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0228,445,997 - 28,466,169 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0227,983,925 - 28,003,260 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl227,984,117 - 28,003,186 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,094,814 - 47,114,992 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4227,649,188 - 27,672,231 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera224,525,921 - 24,545,955 (-)NCBICelera
RGSC_v3.1227,569,557 - 27,592,600 (-)NCBI
Cytogenetic Map2q12NCBI
Hexb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542525,942,278 - 25,961,312 (-)Ensembl
ChiLan1.0NW_00495542525,942,341 - 25,961,312 (-)NCBIChiLan1.0ChiLan1.0
HEXB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2440,590,788 - 40,626,533 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1538,744,423 - 38,780,168 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0540,589,448 - 40,625,176 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1541,199,681 - 41,232,693 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl541,199,681 - 41,232,693 (-)EnsemblpanPan2panpan1.1
HEXB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,221,809 - 57,248,432 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,222,186 - 57,248,417 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha254,199,623 - 54,228,736 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0257,746,022 - 57,775,171 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl257,745,874 - 57,775,170 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1254,810,104 - 54,839,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0255,573,246 - 55,602,349 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0256,470,393 - 56,499,556 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hexb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213188,915,295 - 188,940,491 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365491,917,327 - 1,943,691 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365491,918,482 - 1,943,665 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HEXB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl283,744,627 - 83,784,759 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1283,745,263 - 83,784,762 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2285,331,866 - 85,371,568 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HEXB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1469,037,532 - 69,065,925 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl469,037,583 - 69,065,814 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604917,815,486 - 17,843,814 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hexb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624924195,175 - 219,278 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624924195,406 - 219,232 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

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Variants in Hexb
906 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:55
Interacting mature miRNAs:58
Transcripts:ENSMUST00000022169
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
12880414V125Dq10_mvitamin D active form serum level QTL 10 (mouse)1378036508112036508Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
4141728Egaq4_mearly growth adjusted QTL 4 (mouse)Not determined87901985112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141266Mol3_mmodifier of LPS-response 3 (mouse)Not determined76132600112431103Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse

Markers in Region
Y00964  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381397,176,409 - 97,176,520UniSTSGRCm38
MGSCv371397,946,364 - 97,946,475UniSTSGRCm37
Celera13100,809,442 - 100,809,553UniSTS
Cytogenetic Map13D1UniSTS
cM Map1346.0UniSTS
Whitehead/MRC_RH13831.54UniSTS
Hexb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13D1UniSTS
cM Map1346.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC154620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH003188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY145642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD775639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y00964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000022169   ⟹   ENSMUSP00000022169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1397,312,839 - 97,334,865 (-)Ensembl
GRCm38.p6 Ensembl1397,176,331 - 97,198,357 (-)Ensembl
Ensembl Acc Id: ENSMUST00000222700
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1397,320,184 - 97,334,803 (-)Ensembl
GRCm38.p6 Ensembl1397,183,676 - 97,198,295 (-)Ensembl
RefSeq Acc Id: NM_010422   ⟹   NP_034552
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391397,312,839 - 97,334,865 (-)NCBI
GRCm381397,176,331 - 97,198,357 (-)ENTREZGENE
MGSCv371397,946,286 - 97,968,312 (-)RGD
Celera13100,809,364 - 100,830,755 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034552   ⟸   NM_010422
- Peptide Label: precursor
- UniProtKB: P20060 (UniProtKB/Swiss-Prot),   Q3TXR9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000022169   ⟸   ENSMUST00000022169
Protein Domains
Beta-hexosaminidase eukaryotic type N-terminal   Glycoside hydrolase family 20 catalytic

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P20060-F1-model_v2 AlphaFold P20060 1-536 view protein structure

Promoters
RGD ID:8681092
Promoter ID:EPDNEW_M18577
Type:initiation region
Name:Hexb_1
Description:Mus musculus hexosaminidase B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381397,198,330 - 97,198,390EPDNEW
RGD ID:6849021
Promoter ID:MM_XEF:1999
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_001126987,   NM_001127137
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361397,960,581 - 97,961,081 (-)MPROMDB
RGD ID:6824009
Promoter ID:MM_KWN:14991
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_010422
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361397,968,009 - 97,968,509 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96074 AgrOrtholog
Ensembl Genes ENSMUSG00000021665 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022169 ENTREZGENE
  ENSMUST00000022169.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.379.10 UniProtKB/Swiss-Prot
  Glycosidases UniProtKB/Swiss-Prot
InterPro Beta_hexosaminidase_sua/sub UniProtKB/Swiss-Prot
  Glyco_hydro_20_cat UniProtKB/Swiss-Prot
  Glycoside_hydrolase_SF UniProtKB/Swiss-Prot
  Hex-like_dom2 UniProtKB/Swiss-Prot
  HEX_eukaryotic_N UniProtKB/Swiss-Prot
KEGG Report mmu:15212 UniProtKB/Swiss-Prot
MGD MGI:96074 ENTREZGENE
NCBI Gene 15212 ENTREZGENE
PANTHER BETA-HEXOSAMINIDASE SUBUNIT BETA UniProtKB/Swiss-Prot
  PTHR22600 UniProtKB/Swiss-Prot
Pfam Glyco_hydro_20 UniProtKB/Swiss-Prot
  Glycohydro_20b2 UniProtKB/Swiss-Prot
PhenoGen Hexb PhenoGen
PIRSF B-hxosamndse_ab_euk_ UniProtKB/Swiss-Prot
PRINTS GLHYDRLASE20 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51445 UniProtKB/Swiss-Prot
  SSF55545 UniProtKB/Swiss-Prot
UniProt HEXB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TXR9 ENTREZGENE, UniProtKB/TrEMBL