Bmi1 (Bmi1 polycomb ring finger oncogene) - Rat Genome Database

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Gene: Bmi1 (Bmi1 polycomb ring finger oncogene) Mus musculus
Analyze
Symbol: Bmi1
Name: Bmi1 polycomb ring finger oncogene
RGD ID: 1316582
MGI Page MGI
Description: Enables promoter-specific chromatin binding activity and ubiquitin-protein transferase activator activity. Involved in positive regulation of B cell proliferation and positive regulation of immature T cell proliferation in thymus. Acts upstream of or within several processes, including chordate embryonic development; negative regulation of macromolecule biosynthetic process; and regulation of adaxial/abaxial pattern formation. Located in heterochromatin and nuclear body. Part of PRC1 complex. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in acute myeloid leukemia; colorectal carcinoma; hepatocellular carcinoma; and renal Wilms' tumor. Orthologous to several human genes including BMI1 (BMI1 proto-oncogene, polycomb ring finger).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW546694; B lymphoma Mo-MLV insertion region 1; Bmi; Bmi-; Bmi-1; Pcgf; Pcgf4; polycomb complex protein BMI-1; polycomb group ring finger 4; polycomb group RING finger protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5946   Gm6248  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,681,953 - 18,691,440 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,681,829 - 18,691,440 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38218,677,018 - 18,686,629 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,677,018 - 18,686,629 (+)Ensemblmm10GRCm38
MGSCv37218,598,645 - 18,608,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36218,594,772 - 18,604,383 (+)NCBIMGSCv36mm8
Celera218,564,450 - 18,578,495 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.9NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-benzoquinone  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (EXP)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
Aroclor 1254  (EXP)
arsane  (EXP,ISO)
arsenic atom  (EXP,ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP)
betulinic acid  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
butyric acid  (EXP,ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
casticin  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (EXP)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (EXP,ISO)
epoxiconazole  (EXP)
ethanol  (EXP,ISO)
folic acid  (EXP)
FR900359  (ISO)
genistein  (EXP)
glucaric acid  (EXP)
glutathione  (ISO)
glycidol  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
hydroxyurea  (EXP)
ibrutinib  (ISO)
indometacin  (ISO)
ketamine  (ISO)
lipopolysaccharide  (ISO)
lithium chloride  (EXP,ISO)
malathion  (ISO)
melatonin  (ISO)
monosodium L-glutamate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nickel sulfate  (ISO)
nicotinamide  (EXP)
nicotine  (ISO)
ozone  (ISO)
p-anisidine  (EXP)
paclitaxel  (EXP)
paracetamol  (ISO)
phenobarbital  (EXP,ISO)
phorbol 13-acetate 12-myristate  (ISO)
pyrogallol  (EXP)
quercetin  (EXP,ISO)
reactive oxygen species  (ISO)
rotenone  (EXP,ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon atom  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA,ISO)
heterochromatin  (IDA)
nuclear body  (IDA,IEA,ISO)
nucleus  (IDA,IEA,ISO)
PcG protein complex  (IDA,IEA,ISO)
PRC1 complex  (IBA,IDA,IEA,ISO)
ubiquitin ligase complex  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal axial skeleton morphology  (IAGP)
abnormal bone marrow cell morphology/development  (IAGP)
abnormal brain morphology  (IAGP)
abnormal cell cycle  (IAGP)
abnormal cerebellar granule layer morphology  (IAGP)
abnormal cerebellar layer morphology  (IAGP)
abnormal cerebellar molecular layer  (IAGP)
abnormal cervical atlas morphology  (IAGP)
abnormal corpus callosum morphology  (IAGP)
abnormal craniofacial bone morphology  (IAGP)
abnormal crypts of Lieberkuhn morphology  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal dorsal aorta morphology  (IAGP)
abnormal double-negative T cell morphology  (IAGP)
abnormal duodenum crypts of Lieberkuhn morphology  (IAGP)
abnormal embryo size  (IEA)
abnormal enzyme/coenzyme level  (IAGP)
abnormal epididymis morphology  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal estrous cycle  (IAGP)
abnormal first pharyngeal arch morphology  (IAGP)
abnormal gait  (IAGP)
abnormal hemopoiesis  (IAGP)
abnormal immune system cell morphology  (IAGP)
abnormal immune system organ morphology  (IAGP)
abnormal jejunum crypts of Lieberkuhn morphology  (IAGP)
abnormal male germ cell physiology  (IAGP)
abnormal mitochondrial crista morphology  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal neural tube morphology  (IAGP)
abnormal notochord morphology  (IAGP)
abnormal optic eminence morphology  (IAGP)
abnormal ovary development  (IAGP)
abnormal ovary physiology  (IAGP)
abnormal Purkinje cell dendrite morphology  (IAGP)
abnormal Purkinje cell morphology  (IAGP)
abnormal rib joint morphology  (IAGP)
abnormal scapula morphology  (IAGP)
abnormal second pharyngeal arch morphology  (IAGP)
abnormal seminiferous tubule epithelium morphology  (IAGP)
abnormal somatic mesoderm morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal sperm head morphology  (IAGP)
abnormal sperm mitochondrial sheath morphology  (IAGP)
abnormal sperm nucleus morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen periarteriolar lymphoid sheath morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal spleen white pulp morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal tail bud morphology  (IAGP)
abnormal testis physiology  (IAGP)
abnormal thymus involution  (IAGP)
abnormal thymus morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral arch morphology  (IAGP)
absent spleen germinal center  (IAGP)
acromion hypoplasia  (IAGP)
anemia  (IAGP)
anophthalmia  (IEA)
ataxia  (IAGP)
cachexia  (IAGP)
cerebellum hypoplasia  (IAGP)
cervical vertebral transformation  (IAGP)
cleft secondary palate  (IAGP)
decreased alimentary system tumor incidence  (IAGP)
decreased B cell number  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased cell proliferation  (IAGP)
decreased circulating testosterone level  (IAGP)
decreased colon tumor incidence  (IAGP)
decreased common myeloid progenitor cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased granulosa cell proliferation  (IAGP)
decreased hematopoietic cell number  (IAGP)
decreased hematopoietic stem cell number  (IAGP)
decreased IgM level  (IAGP)
decreased immature B cell number  (IAGP)
decreased intestinal adenoma incidence  (IAGP)
decreased Leydig cell number  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased male germ cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased mature ovarian follicle number  (IAGP)
decreased mitochondrial number  (IAGP)
decreased myeloid cell number  (IAGP)
decreased oocyte number  (IAGP)
decreased ovary weight  (IAGP)
decreased primary ovarian follicle number  (IAGP)
decreased primordial ovarian follicle number  (IAGP)
decreased Purkinje cell number  (IAGP)
decreased secondary ovarian follicle number  (IAGP)
decreased spleen red pulp amount  (IAGP)
decreased spleen weight  (IAGP)
decreased spleen white pulp amount  (IAGP)
decreased splenocyte proliferation  (IAGP)
decreased superovulation rate  (IAGP)
decreased superoxide dismutase level  (IAGP)
decreased T cell number  (IAGP)
decreased testes secretion  (IAGP)
decreased testis weight  (IAGP)
decreased thymocyte number  (IAGP)
delayed vaginal opening  (IAGP)
detached acrosome  (IAGP)
early cellular replicative senescence  (IAGP)
edema  (IEA)
embryonic growth arrest  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged sperm head  (IAGP)
failure of zygotic cell division  (IAGP)
female infertility  (IAGP)
gliosis  (IAGP)
hindbrain hypoplasia  (IAGP)
hippocampal neuron degeneration  (IAGP)
hunched posture  (IAGP)
impaired coordination  (IAGP)
increased apoptosis  (IAGP)
increased atretic ovarian follicle number  (IAGP)
increased common lymphocyte progenitor cell number  (IAGP)
increased granulosa cell apoptosis  (IAGP)
increased intestinal adenoma incidence  (IAGP)
increased male germ cell apoptosis  (IAGP)
increased neural tube apoptosis  (IAGP)
increased tumor incidence  (IAGP)
lumbar vertebral transformation  (IAGP)
lung inflammation  (IAGP)
male infertility  (IAGP)
microphthalmia  (IEA)
no abnormal phenotype detected  (IAGP)
oligozoospermia  (IAGP)
oxidative stress  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, complete penetrance  (IEA)
preweaning lethality, incomplete penetrance  (IEA)
prolonged diestrus  (IAGP)
prolonged metestrus  (IAGP)
scapular bone foramen  (IAGP)
short estrus  (IAGP)
short proestrus  (IAGP)
slow postnatal weight gain  (IAGP)
small cerebellum  (IAGP)
small notochord  (IAGP)
small ovary  (IAGP)
small seminiferous tubules  (IAGP)
small spleen  (IAGP)
small testis  (IAGP)
small thymus  (IAGP)
split exoccipital bone  (IAGP)
split notochord  (IAGP)
sporadic seizures  (IAGP)
teratozoospermia  (IAGP)
thin cerebellar molecular layer  (IAGP)
thoracic vertebral transformation  (IAGP)
thymus atrophy  (IAGP)
thymus cortex hypoplasia  (IAGP)
tremors  (IAGP)
vertebral transformation  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. PRC1 complex diversity: where is it taking us? Gil J and O'Loghlen A, Trends Cell Biol. 2014 Jul 22. pii: S0962-8924(14)00102-0. doi: 10.1016/j.tcb.2014.06.005.
2. The Bmi-1 oncoprotein is overexpressed in human colorectal cancer and correlates with the reduced p16INK4a/p14ARF proteins. Kim JH, etal., Cancer Lett. 2004 Jan 20;203(2):217-24.
3. The epigenetic regulators Bmi1 and Ring1B are differentially regulated in pancreatitis and pancreatic ductal adenocarcinoma. Martinez-Romero C, etal., J Pathol. 2009 Oct;219(2):205-13. doi: 10.1002/path.2585.
4. Accumulation of malignant renal stem cells is associated with epigenetic changes in normal renal progenitor genes. Metsuyanim S, etal., Stem Cells. 2008 Jul;26(7):1808-17. doi: 10.1634/stemcells.2007-0322. Epub 2008 May 8.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. BMI-1 is highly expressed in M0-subtype acute myeloid leukemia. Sawa M, etal., Int J Hematol. 2005 Jul;82(1):42-7.
11. Occupying chromatin: Polycomb mechanisms for getting to genomic targets, stopping transcriptional traffic, and staying put. Simon JA and Kingston RE, Mol Cell. 2013 Mar 7;49(5):808-24. doi: 10.1016/j.molcel.2013.02.013.
12. Methylation-associated silencing of miR-200b facilitates human hepatocellular carcinoma progression by directly targeting BMI1. Wu WR, etal., Oncotarget. 2016 Apr 5;7(14):18684-93. doi: 10.18632/oncotarget.7629.
13. Aberrant expression of EZH2 is associated with a poor outcome and P53 alteration in squamous cell carcinoma of the esophagus. Yamada A, etal., Int J Oncol. 2011 Feb;38(2):345-53. doi: 10.3892/ijo.2010.868. Epub 2010 Dec 9.
Additional References at PubMed
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Genomics

Comparative Map Data
Bmi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,681,953 - 18,691,440 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,681,829 - 18,691,440 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38218,677,018 - 18,686,629 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,677,018 - 18,686,629 (+)Ensemblmm10GRCm38
MGSCv37218,598,645 - 18,608,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36218,594,772 - 18,604,383 (+)NCBIMGSCv36mm8
Celera218,564,450 - 18,578,495 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.9NCBI
BMI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381022,321,099 - 22,331,706 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1022,321,099 - 22,331,484 (+)Ensemblhg38GRCh38
GRCh371022,610,028 - 22,620,635 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,650,146 - 22,660,194 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341022,650,145 - 22,660,190NCBI
Celera1022,297,715 - 22,308,139 (+)NCBICelera
Cytogenetic Map10p12.2NCBI
HuRef1022,276,563 - 22,281,617 (+)NCBIHuRef
CHM1_11022,610,777 - 22,620,864 (+)NCBICHM1_1
T2T-CHM13v2.01022,340,133 - 22,350,740 (+)NCBIT2T-CHM13v2.0
Bmi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81786,240,683 - 86,250,044 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1786,243,491 - 86,250,024 (+)EnsemblGRCr8
mRatBN7.21781,332,175 - 81,341,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1781,332,214 - 81,388,690 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1784,809,066 - 84,812,740 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,644,466 - 88,648,140 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,661,208 - 82,664,882 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01785,360,439 - 85,370,283 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1785,364,483 - 85,368,208 (+)Ensemblrn6Rnor6.0
Rnor_5.01787,087,687 - 87,091,418 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41792,784,216 - 92,787,947 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1780,616,376 - 80,620,118 (+)NCBICelera
RGSC_v3.11792,795,131 - 92,798,710 (+)NCBI
Cytogenetic Map17q12.3NCBI
Bmi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554296,547,731 - 6,558,105 (-)Ensembl
ChiLan1.0NW_0049554296,548,586 - 6,553,730 (-)NCBIChiLan1.0ChiLan1.0
BMI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2835,001,734 - 35,011,206 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11035,006,599 - 35,016,531 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01022,477,755 - 22,487,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11022,854,230 - 22,863,482 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1022,857,776 - 22,863,479 (+)EnsemblpanPan2panpan1.1
BMI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1210,818,232 - 10,828,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl210,818,232 - 10,833,613 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha29,511,530 - 9,521,768 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.029,018,100 - 9,028,340 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl29,018,100 - 9,033,607 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128,381,805 - 8,392,033 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028,465,970 - 8,476,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028,633,839 - 8,644,069 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bmi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934422,243,467 - 22,253,222 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365205,707,778 - 5,717,024 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365205,707,542 - 5,716,966 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,586,509 - 52,596,564 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11052,586,089 - 52,596,154 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21058,240,742 - 58,245,839 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BMI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1922,095,592 - 22,104,894 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605127,837,839 - 27,848,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247966,274,561 - 6,282,984 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247966,277,201 - 6,282,830 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Bmi1
286 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1333
Count of miRNA genes:540
Interacting mature miRNAs:651
Transcripts:ENSMUST00000028071, ENSMUST00000051929, ENSMUST00000132014, ENSMUST00000134734, ENSMUST00000147365, ENSMUST00000150834, ENSMUST00000156284
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125324559Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125324559Mouse
10045633Heal15_mwound healing/regeneration 15 (mouse)Not determined2121989642Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126529589Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse

Markers in Region
AW550818  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,675,953 - 18,676,064UniSTSGRCm38
MGSCv37218,597,580 - 18,597,691UniSTSGRCm37
Celera218,567,834 - 18,567,945UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
cM Map29.0UniSTS
Whitehead/MRC_RH2322.0UniSTS
AW546694  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,685,643 - 18,685,767UniSTSGRCm38
MGSCv37218,607,270 - 18,607,394UniSTSGRCm37
Celera218,577,509 - 18,577,633UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
Whitehead/MRC_RH2327.4UniSTS
M64279  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,686,180 - 18,686,366UniSTSGRCm38
MGSCv37218,607,807 - 18,607,993UniSTSGRCm37
Celera218,578,046 - 18,578,232UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
Whitehead_YAC2 UniSTS
UniSTS:234331  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,674,435 - 18,674,702UniSTSGRCm38
MGSCv37218,596,062 - 18,596,329UniSTSGRCm37
Celera218,566,317 - 18,566,584UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
cM Map29.0UniSTS
AU022527  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,676,007 - 18,676,204UniSTSGRCm38
MGSCv37218,597,634 - 18,597,831UniSTSGRCm37
Celera218,567,888 - 18,568,085UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
cM Map29.5UniSTS
Whitehead/MRC_RH2317.35UniSTS
Bmi1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,686,392 - 18,686,473UniSTSGRCm38
MGSCv37218,608,019 - 18,608,100UniSTSGRCm37
Celera218,578,258 - 18,578,339UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS
MARC_15439-15451:1010170069:5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38218,683,367 - 18,683,710UniSTSGRCm38
MGSCv37218,604,994 - 18,605,337UniSTSGRCm37
Celera218,575,233 - 18,575,576UniSTS
Cytogenetic Map2A3UniSTS
cM Map29.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001416911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001416914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK145437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL928680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY011520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS065978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ337175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M64279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000028071   ⟹   ENSMUSP00000028071
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,681,829 - 18,691,440 (+)Ensembl
GRCm38.p6 Ensembl218,677,018 - 18,686,629 (+)Ensembl
Ensembl Acc Id: ENSMUST00000051929   ⟹   ENSMUSP00000110300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,685,183 - 18,690,941 (+)Ensembl
GRCm38.p6 Ensembl218,680,372 - 18,686,130 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,682,091 - 18,687,176 (+)Ensembl
GRCm38.p6 Ensembl218,677,280 - 18,682,365 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134734   ⟹   ENSMUSP00000121876
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,685,805 - 18,687,841 (+)Ensembl
GRCm38.p6 Ensembl218,680,994 - 18,683,030 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147365   ⟹   ENSMUSP00000118273
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,685,918 - 18,687,667 (+)Ensembl
GRCm38.p6 Ensembl218,681,107 - 18,682,856 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150834   ⟹   ENSMUSP00000119331
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,682,618 - 18,688,487 (+)Ensembl
GRCm38.p6 Ensembl218,677,807 - 18,683,676 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156284   ⟹   ENSMUSP00000118730
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl218,685,185 - 18,688,824 (+)Ensembl
GRCm38.p6 Ensembl218,680,374 - 18,684,013 (+)Ensembl
RefSeq Acc Id: NM_001416911   ⟹   NP_001403840
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,682,406 - 18,691,440 (+)NCBI
RefSeq Acc Id: NM_001416912   ⟹   NP_001403841
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,685,185 - 18,691,440 (+)NCBI
RefSeq Acc Id: NM_001416913   ⟹   NP_001403842
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,685,797 - 18,691,440 (+)NCBI
RefSeq Acc Id: NM_001416914   ⟹   NP_001403843
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,685,918 - 18,691,440 (+)NCBI
RefSeq Acc Id: NM_007552   ⟹   NP_031578
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39218,681,953 - 18,691,440 (+)NCBI
GRCm38218,677,018 - 18,686,629 (+)ENTREZGENE
MGSCv37218,598,645 - 18,608,256 (+)RGD
Celera218,564,450 - 18,578,495 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031578   ⟸   NM_007552
- UniProtKB: P25916 (UniProtKB/Swiss-Prot),   Q2LC58 (UniProtKB/TrEMBL),   Q3ULL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119331   ⟸   ENSMUST00000150834
Ensembl Acc Id: ENSMUSP00000110300   ⟸   ENSMUST00000051929
Ensembl Acc Id: ENSMUSP00000118273   ⟸   ENSMUST00000147365
Ensembl Acc Id: ENSMUSP00000028071   ⟸   ENSMUST00000028071
Ensembl Acc Id: ENSMUSP00000121876   ⟸   ENSMUST00000134734
Ensembl Acc Id: ENSMUSP00000118730   ⟸   ENSMUST00000156284
RefSeq Acc Id: NP_001403840   ⟸   NM_001416911
- UniProtKB: P25916 (UniProtKB/Swiss-Prot),   Q2LC58 (UniProtKB/TrEMBL),   Q3ULL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001403841   ⟸   NM_001416912
- UniProtKB: P25916 (UniProtKB/Swiss-Prot),   Q2LC58 (UniProtKB/TrEMBL),   Q3ULL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001403842   ⟸   NM_001416913
- UniProtKB: P25916 (UniProtKB/Swiss-Prot),   Q2LC58 (UniProtKB/TrEMBL),   Q3ULL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001403843   ⟸   NM_001416914
- UniProtKB: P25916 (UniProtKB/Swiss-Prot),   Q2LC58 (UniProtKB/TrEMBL),   Q3ULL2 (UniProtKB/TrEMBL)
Protein Domains
RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25916-F1-model_v2 AlphaFold P25916 1-324 view protein structure

Promoters
RGD ID:6830910
Promoter ID:MM_KWN:27903
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:NM_007552,   OTTMUST00000026763,   OTTMUST00000026767
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36218,597,726 - 18,598,947 (+)MPROMDB
RGD ID:6830913
Promoter ID:MM_KWN:27905
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000026765,   OTTMUST00000026766
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36218,602,571 - 18,603,071 (+)MPROMDB
RGD ID:6876430
Promoter ID:EPDNEW_M1666
Type:initiation region
Name:Bmi1_1
Description:Mus musculus Bmi1 polycomb ring finger oncogene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1667  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38218,677,018 - 18,677,078EPDNEW
RGD ID:6876432
Promoter ID:EPDNEW_M1667
Type:single initiation site
Name:Bmi1_2
Description:Mus musculus Bmi1 polycomb ring finger oncogene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1666  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38218,677,425 - 18,677,485EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88174 AgrOrtholog
Ensembl Genes ENSMUSG00000026739 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028071 ENTREZGENE
  ENSMUST00000028071.13 UniProtKB/Swiss-Prot
  ENSMUST00000051929 ENTREZGENE
  ENSMUST00000051929.13 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
InterPro RAWUL UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
  Znf_RING_CS UniProtKB/Swiss-Prot
KEGG Report mmu:12151 UniProtKB/Swiss-Prot
MGD MGI:88174 ENTREZGENE
NCBI Gene 12151 ENTREZGENE
PANTHER POLYCOMB COMPLEX PROTEIN BMI-1 UniProtKB/Swiss-Prot
  RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT UniProtKB/Swiss-Prot
Pfam RAWUL UniProtKB/Swiss-Prot
  zf-C3HC4_2 UniProtKB/Swiss-Prot
PharmGKB BMI1 RGD
PhenoGen Bmi1 PhenoGen
PROSITE ZF_RING_1 UniProtKB/Swiss-Prot
  ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot
UniProt A2ASR5_MOUSE UniProtKB/TrEMBL
  A2ASR6_MOUSE UniProtKB/TrEMBL
  A2ASR7_MOUSE UniProtKB/TrEMBL
  A2ASR8_MOUSE UniProtKB/TrEMBL
  BMI1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q2LC58 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULL2 ENTREZGENE, UniProtKB/TrEMBL