Morn4 (MORN repeat containing 4) - Rat Genome Database

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Gene: Morn4 (MORN repeat containing 4) Mus musculus
Analyze
Symbol: Morn4
Name: MORN repeat containing 4
RGD ID: 1316473
MGI Page MGI
Description: Involved in response to axon injury. Is active in stereocilium tip. Is expressed in gut; nervous system; and sensory organ. Orthologous to human MORN4 (MORN repeat containing 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MORN repeat-containing protein 4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,063,378 - 42,074,815 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,063,378 - 42,074,796 (-)EnsemblGRCm39 Ensembl
GRCm381942,074,939 - 42,086,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,074,939 - 42,086,357 (-)EnsemblGRCm38mm10GRCm38
MGSCv371942,149,429 - 42,160,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,128,253 - 42,132,444 (-)NCBIMGSCv36mm8
Celera1942,878,810 - 42,890,009 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22496551   PMID:26754646   PMID:33378226   PMID:34321999   PMID:36417873   PMID:36682578  


Genomics

Comparative Map Data
Morn4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391942,063,378 - 42,074,815 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1942,063,378 - 42,074,796 (-)EnsemblGRCm39 Ensembl
GRCm381942,074,939 - 42,086,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1942,074,939 - 42,086,357 (-)EnsemblGRCm38mm10GRCm38
MGSCv371942,149,429 - 42,160,860 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361942,128,253 - 42,132,444 (-)NCBIMGSCv36mm8
Celera1942,878,810 - 42,890,009 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1935.72NCBI
MORN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381097,614,555 - 97,634,156 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1097,614,553 - 97,633,500 (-)EnsemblGRCh38hg38GRCh38
GRCh371099,374,312 - 99,393,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361099,364,300 - 99,383,903 (-)NCBINCBI36Build 36hg18NCBI36
Build 341099,364,300 - 99,383,227NCBI
Celera1093,111,622 - 93,131,220 (-)NCBICelera
Cytogenetic Map10q24.2NCBI
HuRef1093,000,269 - 93,019,932 (-)NCBIHuRef
CHM1_11099,656,044 - 99,675,672 (-)NCBICHM1_1
T2T-CHM13v2.01098,494,762 - 98,514,356 (-)NCBIT2T-CHM13v2.0
Morn4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,837,639 - 250,847,943 (-)NCBIGRCr8
mRatBN7.21240,888,338 - 240,898,644 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1240,888,344 - 240,898,716 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1249,033,786 - 249,044,093 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01255,730,920 - 255,741,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01248,383,948 - 248,394,255 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01261,323,079 - 261,333,383 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1261,323,083 - 261,333,383 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01268,775,551 - 268,785,855 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41248,764,890 - 248,775,194 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11249,023,640 - 249,033,239 (+)NCBI
Celera1236,722,836 - 236,733,176 (-)NCBICelera
Cytogenetic Map1q54NCBI
Morn4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555073,713,483 - 3,724,990 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555073,713,483 - 3,725,303 (-)NCBIChiLan1.0ChiLan1.0
MORN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28109,526,610 - 109,546,299 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110109,531,929 - 109,551,619 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01094,235,061 - 94,254,509 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11097,728,039 - 97,746,747 (-)NCBIpanpan1.1PanPan1.1panPan2
MORN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12810,873,435 - 10,885,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2810,874,318 - 10,884,047 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2811,058,441 - 11,070,381 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02811,198,629 - 11,210,578 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2811,198,636 - 11,210,494 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12810,859,758 - 10,871,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02810,920,315 - 10,932,241 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02811,060,135 - 11,072,079 (-)NCBIUU_Cfam_GSD_1.0
Morn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721336,049,888 - 36,060,537 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366362,089,062 - 2,099,614 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366362,089,013 - 2,099,651 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MORN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14108,987,752 - 108,999,598 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114108,987,739 - 108,999,610 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214118,491,716 - 118,503,858 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MORN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1990,775,224 - 90,794,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl990,776,920 - 90,780,252 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604851,674,719 - 51,694,488 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Morn4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247379,257,196 - 9,267,516 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247379,257,195 - 9,271,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Morn4
423 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:459
Count of miRNA genes:317
Interacting mature miRNAs:359
Transcripts:ENSMUST00000051772
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1301466T2dm2_mtype 2 diabetes mellitus 2 (mouse)Not determined193837605061420004Mouse
1302170Tanidd1_mtally ho associated non-insulin dependednt diabetes mellitus 1 (mouse)Not determined193675259761420004Mouse
1302104Lfp1_mlong free running period 1 (mouse)Not determined193918406461420004Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
1301639Stnn_mstriatal neuron number (mouse)Not determined193395195261420004Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
1300683Fembm7_mfemoral bone morphometry 7 (mouse)Not determined193014122461420004Mouse
10043896Bw21_mbody weight QTL 21 (mouse)Not determined193959606661420004Mouse
4141019Tgq29_mtriglyceride QTL 29 (mouse)Not determined3459678661420004Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
1301942Pas13_mpulmonary adenoma susceptibility 13 (mouse)Not determined193014123161420004Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
1300856Nobq2_mNew Zealand obese QTL 2 (mouse)Not determined193089788061420004Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4141650Chldq9_mcholesterol and HDL QTL 9 (mouse)Not determined193788298261420004Mouse
13504736Ifvrq6_minfluenza virus resistance QTL 6 (mouse)193690291044913949Mouse
1301410Cd8mts6_mCD8 memory T cell subset 6 (mouse)Not determined193014123161420004Mouse
1301479Sluc1_msusceptibility to lung cancer 1 (mouse)Not determined193601694446761521Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1301741Lith2_mlithogenic gene 2 (mouse)Not determined193299215861420004Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse


Sequence


Ensembl Acc Id: ENSMUST00000051772   ⟹   ENSMUSP00000062887
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,063,381 - 42,074,796 (-)Ensembl
GRCm38.p6 Ensembl1942,074,942 - 42,086,357 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1942,063,378 - 42,067,572 (-)Ensembl
GRCm38.p6 Ensembl1942,074,939 - 42,079,133 (-)Ensembl
RefSeq Acc Id: NM_198108   ⟹   NP_932776
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391942,063,378 - 42,074,809 (-)NCBI
GRCm381942,074,939 - 42,086,370 (-)ENTREZGENE
MGSCv371942,149,429 - 42,160,860 (-)RGD
Celera1942,878,810 - 42,890,009 (-)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030250897   ⟹   XP_030106757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391942,063,381 - 42,074,815 (-)NCBI
GRCm381942,074,942 - 42,086,376 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_932776 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106757 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAE32407 (Get FASTA)   NCBI Sequence Viewer  
  BAE34916 (Get FASTA)   NCBI Sequence Viewer  
  EDL41878 (Get FASTA)   NCBI Sequence Viewer  
  EDL41879 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000062887
  ENSMUSP00000062887.9
GenBank Protein Q6PGF2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_932776   ⟸   NM_198108
- UniProtKB: Q6PGF2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030106757   ⟸   XM_030250897
- Peptide Label: isoform X1
- UniProtKB: Q6PGF2 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000062887   ⟸   ENSMUST00000051772

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PGF2-F1-model_v2 AlphaFold Q6PGF2 1-146 view protein structure

Promoters
RGD ID:13679506
Promoter ID:EPDNEW_M23902
Type:multiple initiation site
Name:Morn4_1
Description:Mus musculus MORN repeat containing 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381942,086,357 - 42,086,417EPDNEW
RGD ID:6829861
Promoter ID:MM_KWN:27083
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:UC008HND.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361942,154,186 - 42,154,686 (-)MPROMDB
RGD ID:6830210
Promoter ID:MM_KWN:27084
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000084339,   NM_198108
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361942,160,524 - 42,161,024 (-)MPROMDB
RGD ID:6848721
Promoter ID:MM_TRO:5144
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:MTR018222.19.1085.0
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361942,163,574 - 42,164,074 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2449568 AgrOrtholog
Ensembl Genes ENSMUSG00000049670 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000051772 ENTREZGENE
  ENSMUST00000051772.10 UniProtKB/Swiss-Prot
Gene3D-CATH Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/Swiss-Prot
InterPro MORN UniProtKB/Swiss-Prot
  MORN4 UniProtKB/Swiss-Prot
KEGG Report mmu:226123 UniProtKB/Swiss-Prot
MGD MGI:2449568 ENTREZGENE
NCBI Gene 226123 ENTREZGENE
PANTHER MORN REPEAT-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
  MORN REPEAT-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
Pfam MORN UniProtKB/Swiss-Prot
PhenoGen Morn4 PhenoGen
SMART MORN UniProtKB/Swiss-Prot
Superfamily-SCOP Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/Swiss-Prot
UniProt MORN4_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE