SLC39A10 (solute carrier family 39 member 10) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: SLC39A10 (solute carrier family 39 member 10) Homo sapiens
Analyze
Symbol: SLC39A10
Name: solute carrier family 39 member 10
RGD ID: 1316445
HGNC Page HGNC:20861
Description: Enables zinc ion transmembrane transporter activity. Involved in epithelial to mesenchymal transition and zinc ion transmembrane transport. Located in apical plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp781L10106; LZT-Hs2; MGC126565; MGC138428; solute carrier family 39 (metal ion transporter), member 10; solute carrier family 39 (zinc transporter), member 10; zinc transporter 10; zinc transporter ZIP10; ZIP-10; ZIP10; zrt- and Irt-like protein 10; ZRT/IRT-like protein 10
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382195,613,029 - 195,737,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2195,575,977 - 195,737,702 (+)EnsemblGRCh38hg38GRCh38
GRCh372196,521,682 - 196,602,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362196,230,184 - 196,310,663 (+)NCBINCBI36Build 36hg18NCBI36
Celera2190,277,406 - 190,358,291 (+)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2188,374,467 - 188,455,230 (+)NCBIHuRef
CHM1_12196,527,823 - 196,608,722 (+)NCBICHM1_1
T2T-CHM13v2.02196,097,362 - 196,222,040 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
1,2-dimethylhydrazine  (ISO)
1,3-dicyclohexylcarbodiimide  (ISO)
1-benzylpiperazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrolein  (EXP)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
alpha-pinene  (EXP)
amitrole  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (EXP)
atrazine  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
cadmium sulfate  (ISO)
calcitriol  (EXP)
cannabidiol  (ISO)
carbamazepine  (EXP)
carbon nanotube  (ISO)
CGP 52608  (EXP)
chlorpyrifos  (ISO)
cisplatin  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
coumarin  (EXP)
cyclosporin A  (EXP)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
Dibutyl phosphate  (EXP)
dicrotophos  (EXP)
dorsomorphin  (EXP)
doxorubicin  (EXP)
enzyme inhibitor  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (EXP)
flusilazole  (ISO)
FR900359  (EXP)
gadodiamide hydrate  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (EXP)
inulin  (ISO)
ivermectin  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
mercaptoethanol  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (EXP)
motexafin gadolinium  (EXP)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (EXP,ISO)
nickel dichloride  (ISO)
ochratoxin A  (EXP)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
pentetic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
potassium chromate  (EXP)
quercetin  (EXP)
rimonabant  (ISO)
SB 431542  (EXP)
silicon dioxide  (EXP)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
tebufenpyrad  (EXP)
temozolomide  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
zidovudine  (EXP)
zinc acetate  (EXP)
zinc atom  (EXP,ISO)
zinc dichloride  (ISO)
zinc sulfate  (ISO)
zinc(0)  (EXP,ISO)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical plasma membrane  (IDA,IEA)
membrane  (IEA)
plasma membrane  (IBA,IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10574462   PMID:12477932   PMID:12659941   PMID:14702039   PMID:19064571   PMID:19322201   PMID:20379614   PMID:21873635   PMID:22832960   PMID:23898208   PMID:24587242   PMID:25200496  
PMID:25544563   PMID:25798074   PMID:26186194   PMID:26439863   PMID:26496610   PMID:26638075   PMID:26831064   PMID:26972000   PMID:27274087   PMID:27880917   PMID:28514442   PMID:28692057  
PMID:29117863   PMID:29180421   PMID:29180619   PMID:29568061   PMID:30194290   PMID:30442766   PMID:30520657   PMID:30639242   PMID:31056421   PMID:31678930   PMID:31871319   PMID:31875492  
PMID:31980649   PMID:32614325   PMID:32797246   PMID:33060197   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34186245   PMID:34349018   PMID:34432599   PMID:34687317   PMID:34706747  
PMID:35271311   PMID:35384245   PMID:35696571   PMID:35844135   PMID:36114006   PMID:36237976   PMID:36409527   PMID:36424410   PMID:36454509   PMID:36610398   PMID:36976175   PMID:37314216  
PMID:37340423   PMID:37499664   PMID:37524874   PMID:37616343   PMID:38117590   PMID:38569033   PMID:39499777  


Genomics

Comparative Map Data
SLC39A10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382195,613,029 - 195,737,700 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2195,575,977 - 195,737,702 (+)EnsemblGRCh38hg38GRCh38
GRCh372196,521,682 - 196,602,424 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362196,230,184 - 196,310,663 (+)NCBINCBI36Build 36hg18NCBI36
Celera2190,277,406 - 190,358,291 (+)NCBICelera
Cytogenetic Map2q32.3NCBI
HuRef2188,374,467 - 188,455,230 (+)NCBIHuRef
CHM1_12196,527,823 - 196,608,722 (+)NCBICHM1_1
T2T-CHM13v2.02196,097,362 - 196,222,040 (+)NCBIT2T-CHM13v2.0
Slc39a10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,846,704 - 46,964,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,846,704 - 46,932,012 (-)EnsemblGRCm39 Ensembl
GRCm38146,807,544 - 46,925,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl146,807,544 - 46,892,852 (-)EnsemblGRCm38mm10GRCm38
MGSCv37146,864,389 - 46,910,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36146,752,090 - 46,798,055 (-)NCBIMGSCv36mm8
Celera147,145,316 - 47,190,906 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
cM Map124.07NCBI
Slc39a10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8962,331,281 - 62,454,754 (+)NCBIGRCr8
mRatBN7.2954,836,841 - 54,960,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl954,876,141 - 54,960,325 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx963,415,252 - 63,464,475 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0968,531,028 - 68,580,251 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0966,826,876 - 66,876,105 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0959,947,562 - 60,070,549 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl960,021,534 - 60,070,552 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0959,634,923 - 59,758,222 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4952,168,107 - 52,217,677 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1952,169,481 - 52,216,722 (+)NCBI
Celera952,413,746 - 52,463,043 (+)NCBICelera
Cytogenetic Map9q31NCBI
Slc39a10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554034,426,538 - 4,479,693 (-)NCBIChiLan1.0ChiLan1.0
SLC39A10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21398,199,554 - 98,357,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B98,214,541 - 98,372,965 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B82,823,472 - 82,981,894 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B200,736,327 - 200,883,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B200,805,459 - 200,883,524 (+)Ensemblpanpan1.1panPan2
SLC39A10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1375,482,200 - 5,521,104 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl375,482,177 - 5,521,110 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha376,325,793 - 6,462,496 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,271,185 - 5,408,052 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl375,270,867 - 5,408,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1375,272,054 - 5,408,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0375,244,321 - 5,380,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,260,580 - 5,397,312 (+)NCBIUU_Cfam_GSD_1.0
Slc39a10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303153,412,914 - 153,539,813 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365063,298,245 - 3,396,291 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365063,298,259 - 3,425,126 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1599,584,872 - 99,724,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11599,584,830 - 99,724,621 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC39A10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11081,143,658 - 81,273,010 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1081,187,587 - 81,273,749 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040118,172,530 - 118,298,973 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248541,163,025 - 1,280,717 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC39A10
43 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q32.3(chr2:195270237-195722242)x1 copy number loss See cases [RCV000050813] Chr2:195270237..195722242 [GRCh38]
Chr2:196134961..196586966 [GRCh37]
Chr2:195843206..196295211 [NCBI36]
Chr2:2q32.3		 uncertain significance
GRCh38/hg38 2q31.1-33.2(chr2:174898848-203941548)x1 copy number loss See cases [RCV000050980] Chr2:174898848..203941548 [GRCh38]
Chr2:175763576..204806271 [GRCh37]
Chr2:175471822..204514516 [NCBI36]
Chr2:2q31.1-33.2		 pathogenic
GRCh38/hg38 2q32.3-33.1(chr2:194515159-198545937)x1 copy number loss See cases [RCV000051092] Chr2:194515159..198545937 [GRCh38]
Chr2:195379883..199410661 [GRCh37]
Chr2:195088128..199118906 [NCBI36]
Chr2:2q32.3-33.1		 pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3		 pathogenic
GRCh38/hg38 2q31.1-33.1(chr2:176304445-202039790)x1 copy number loss See cases [RCV000052558] Chr2:176304445..202039790 [GRCh38]
Chr2:177169173..202904513 [GRCh37]
Chr2:176877419..202612758 [NCBI36]
Chr2:2q31.1-33.1		 pathogenic
GRCh38/hg38 2q31.2-33.1(chr2:177874070-198525492)x1 copy number loss See cases [RCV000052559] Chr2:177874070..198525492 [GRCh38]
Chr2:178738797..199390216 [GRCh37]
Chr2:178447043..199098461 [NCBI36]
Chr2:2q31.2-33.1		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] Chr2:193122313..241074980 [GRCh38]
Chr2:193987039..242014395 [GRCh37]
Chr2:193695284..241663068 [NCBI36]
Chr2:2q32.3-37.3		 pathogenic
NM_001127257.1(SLC39A10):c.91C>T (p.His31Tyr) single nucleotide variant Malignant melanoma [RCV000065337] Chr2:195680133 [GRCh38]
Chr2:196544857 [GRCh37]
Chr2:196253102 [NCBI36]
Chr2:2q32.3		 not provided
NM_001127257.1(SLC39A10):c.162A>G (p.Gln54=) single nucleotide variant Malignant melanoma [RCV000065338] Chr2:195680204 [GRCh38]
Chr2:196544928 [GRCh37]
Chr2:196253173 [NCBI36]
Chr2:2q32.3		 not provided
NM_001127257.1(SLC39A10):c.1212A>G (p.Ala404=) single nucleotide variant Malignant melanoma [RCV000065339] Chr2:195683902 [GRCh38]
Chr2:196548626 [GRCh37]
Chr2:196256871 [NCBI36]
Chr2:2q32.3		 not provided
NM_001127257.1(SLC39A10):c.1953C>T (p.Ser651=) single nucleotide variant Malignant melanoma [RCV000065340] Chr2:195716893 [GRCh38]
Chr2:196581617 [GRCh37]
Chr2:196289862 [NCBI36]
Chr2:2q32.3		 not provided
NM_001127257.1(SLC39A10):c.438C>T (p.Ser146=) single nucleotide variant Malignant melanoma [RCV000060434] Chr2:195680480 [GRCh38]
Chr2:196545204 [GRCh37]
Chr2:196253449 [NCBI36]
Chr2:2q32.3		 not provided
NM_001127257.1(SLC39A10):c.2147-4686G>A single nucleotide variant Lung cancer [RCV000091800] Chr2:195723473 [GRCh38]
Chr2:196588197 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh38/hg38 2q32.3-33.2(chr2:195660594-203969488)x1 copy number loss See cases [RCV000135341] Chr2:195660594..203969488 [GRCh38]
Chr2:196525318..204834211 [GRCh37]
Chr2:196233563..204542456 [NCBI36]
Chr2:2q32.3-33.2		 pathogenic
GRCh38/hg38 2q32.3-33.1(chr2:195368551-200214331)x1 copy number loss See cases [RCV000135664] Chr2:195368551..200214331 [GRCh38]
Chr2:196233275..201079054 [GRCh37]
Chr2:195941520..200787299 [NCBI36]
Chr2:2q32.3-33.1		 pathogenic
GRCh38/hg38 2q32.1-33.1(chr2:186027472-201059372)x1 copy number loss See cases [RCV000135876] Chr2:186027472..201059372 [GRCh38]
Chr2:186892199..201924095 [GRCh37]
Chr2:186600444..201632340 [NCBI36]
Chr2:2q32.1-33.1		 pathogenic
GRCh38/hg38 2q31.3-36.2(chr2:180513793-224302848)x3 copy number gain See cases [RCV000139446] Chr2:180513793..224302848 [GRCh38]
Chr2:181378520..225167565 [GRCh37]
Chr2:181086765..224875809 [NCBI36]
Chr2:2q31.3-36.2		 pathogenic
GRCh38/hg38 2q32.3-35(chr2:192938826-215705052)x1 copy number loss See cases [RCV000141254] Chr2:192938826..215705052 [GRCh38]
Chr2:193803552..216569775 [GRCh37]
Chr2:193511797..216278020 [NCBI36]
Chr2:2q32.3-35		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh37/hg19 2q32.3-33.1(chr2:196581377-200947041)x1 copy number loss See cases [RCV000240401] Chr2:196581377..200947041 [GRCh37]
Chr2:2q32.3-33.1		 pathogenic
GRCh37/hg19 2q32.3-33.1(chr2:194581315-201752422)x1 copy number loss See cases [RCV000446984] Chr2:194581315..201752422 [GRCh37]
Chr2:2q32.3-33.1		 pathogenic
GRCh37/hg19 2q31.1-35(chr2:169829974-215521436)x3 copy number gain See cases [RCV000448271] Chr2:169829974..215521436 [GRCh37]
Chr2:2q31.1-35		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_020342.3(SLC39A10):c.1813A>G (p.Ile605Val) single nucleotide variant not specified [RCV004302822] Chr2:195716753 [GRCh38]
Chr2:196581477 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q32.3-33.1(chr2:193537927-202027736)x1 copy number loss not provided [RCV000682162] Chr2:193537927..202027736 [GRCh37]
Chr2:2q32.3-33.1		 pathogenic
GRCh37/hg19 2q32.3-33.1(chr2:195883643-197504800)x1 copy number loss not provided [RCV000682134] Chr2:195883643..197504800 [GRCh37]
Chr2:2q32.3-33.1		 uncertain significance
GRCh37/hg19 2q32.2-33.1(chr2:191750202-202297376)x1 copy number loss not provided [RCV000682165] Chr2:191750202..202297376 [GRCh37]
Chr2:2q32.2-33.1		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q32.2-33.1(chr2:189490490-200615496)x1 copy number loss not provided [RCV000740789] Chr2:189490490..200615496 [GRCh37]
Chr2:2q32.2-33.1		 pathogenic
Single allele duplication Neurodevelopmental disorder [RCV000787403] Chr2:188926928..225298653 [GRCh37]
Chr2:2q32.1-36.2		 pathogenic
GRCh37/hg19 2q32.1-34(chr2:185697659-213002074) copy number loss Chromosome 2q32-q33 deletion syndrome [RCV002280608] Chr2:185697659..213002074 [GRCh37]
Chr2:2q32.1-34		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q32.3(chr2:196483256-196951980)x3 copy number gain not provided [RCV000849698] Chr2:196483256..196951980 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q32.3-33.1(chr2:195786723-200531127)x1 copy number loss not provided [RCV000849862] Chr2:195786723..200531127 [GRCh37]
Chr2:2q32.3-33.1		 pathogenic
GRCh37/hg19 2q24.2-34(chr2:163233162-211927188)x3 copy number gain not provided [RCV001005349] Chr2:163233162..211927188 [GRCh37]
Chr2:2q24.2-34		 pathogenic
NM_020342.3(SLC39A10):c.8T>C (p.Val3Ala) single nucleotide variant not specified [RCV004313693] Chr2:195680050 [GRCh38]
Chr2:196544774 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q32.1-33.1(chr2:187152754-199960525)x1 copy number loss not provided [RCV002472632] Chr2:187152754..199960525 [GRCh37]
Chr2:2q32.1-33.1		 pathogenic
NM_020342.3(SLC39A10):c.1351A>G (p.Met451Val) single nucleotide variant not specified [RCV004683732] Chr2:195706750 [GRCh38]
Chr2:196571474 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 copy number gain See cases [RCV001263052] Chr2:178397959..243007457 [GRCh37]
Chr2:2q31.2-37.3		 pathogenic
GRCh37/hg19 2q32.2-33.1(chr2:190345272-200212289) copy number loss Chromosome 2q32-q33 deletion syndrome [RCV001255693] Chr2:190345272..200212289 [GRCh37]
Chr2:2q32.2-33.1		 pathogenic
GRCh37/hg19 2q32.1-33.1(chr2:188294864-197731939)x3 copy number gain not provided [RCV001258567] Chr2:188294864..197731939 [GRCh37]
Chr2:2q32.1-33.1		 likely pathogenic
GRCh37/hg19 2q32.3(chr2:196590319-196642836)x1 copy number loss not provided [RCV001836552] Chr2:196590319..196642836 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q31.1-35(chr2:169829974-215521436) copy number gain not specified [RCV002053265] Chr2:169829974..215521436 [GRCh37]
Chr2:2q31.1-35		 pathogenic
GRCh37/hg19 2q32.2-34(chr2:189909904-209468383)x1 copy number loss not provided [RCV002473800] Chr2:189909904..209468383 [GRCh37]
Chr2:2q32.2-34		 pathogenic
NM_020342.3(SLC39A10):c.307G>T (p.Asp103Tyr) single nucleotide variant not specified [RCV004106483] Chr2:195680349 [GRCh38]
Chr2:196545073 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.959C>T (p.Ala320Val) single nucleotide variant not specified [RCV004183080] Chr2:195681001 [GRCh38]
Chr2:196545725 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.208C>T (p.Arg70Cys) single nucleotide variant not specified [RCV004172836] Chr2:195680250 [GRCh38]
Chr2:196544974 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.664G>A (p.Glu222Lys) single nucleotide variant not specified [RCV004105167] Chr2:195680706 [GRCh38]
Chr2:196545430 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2023A>T (p.Met675Leu) single nucleotide variant not specified [RCV004159452] Chr2:195716963 [GRCh38]
Chr2:196581687 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.686C>A (p.Pro229Gln) single nucleotide variant not specified [RCV004073610] Chr2:195680728 [GRCh38]
Chr2:196545452 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.1054A>T (p.Asn352Tyr) single nucleotide variant not specified [RCV004204848] Chr2:195683744 [GRCh38]
Chr2:196548468 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.1873G>A (p.Ala625Thr) single nucleotide variant not specified [RCV004201757] Chr2:195716813 [GRCh38]
Chr2:196581537 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2399A>G (p.Gln800Arg) single nucleotide variant not specified [RCV004173837] Chr2:195734944 [GRCh38]
Chr2:196599668 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.944A>G (p.His315Arg) single nucleotide variant not specified [RCV004263889] Chr2:195680986 [GRCh38]
Chr2:196545710 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2266G>A (p.Ala756Thr) single nucleotide variant not specified [RCV004270644] Chr2:195728278 [GRCh38]
Chr2:196593002 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.865G>A (p.Asp289Asn) single nucleotide variant not specified [RCV004250480] Chr2:195680907 [GRCh38]
Chr2:196545631 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.548G>A (p.Arg183His) single nucleotide variant not specified [RCV004256251] Chr2:195680590 [GRCh38]
Chr2:196545314 [GRCh37]
Chr2:2q32.3		 uncertain significance
GRCh37/hg19 2q32.1-36.1(chr2:186698504-223918111)x3 copy number gain See cases [RCV003329558] Chr2:186698504..223918111 [GRCh37]
Chr2:2q32.1-36.1		 pathogenic
GRCh37/hg19 2q32.3-34(chr2:194305623-215261531)x1 copy number loss not specified [RCV003986323] Chr2:194305623..215261531 [GRCh37]
Chr2:2q32.3-34		 pathogenic
NM_020342.3(SLC39A10):c.1891G>A (p.Glu631Lys) single nucleotide variant not specified [RCV004461497] Chr2:195716831 [GRCh38]
Chr2:196581555 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2182G>A (p.Val728Ile) single nucleotide variant not specified [RCV004461498] Chr2:195728194 [GRCh38]
Chr2:196592918 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.530G>A (p.Arg177His) single nucleotide variant not specified [RCV004461507] Chr2:195680572 [GRCh38]
Chr2:196545296 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.806C>T (p.Pro269Leu) single nucleotide variant not specified [RCV004461509] Chr2:195680848 [GRCh38]
Chr2:196545572 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.1858G>T (p.Asp620Tyr) single nucleotide variant not specified [RCV004461496] Chr2:195716798 [GRCh38]
Chr2:196581522 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2218A>G (p.Met740Val) single nucleotide variant not specified [RCV004461500] Chr2:195728230 [GRCh38]
Chr2:196592954 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2377C>A (p.His793Asn) single nucleotide variant not specified [RCV004461501] Chr2:195734922 [GRCh38]
Chr2:196599646 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.27T>A (p.Phe9Leu) single nucleotide variant not specified [RCV004461503] Chr2:195680069 [GRCh38]
Chr2:196544793 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.326T>C (p.Val109Ala) single nucleotide variant not specified [RCV004461505] Chr2:195680368 [GRCh38]
Chr2:196545092 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.341T>C (p.Ile114Thr) single nucleotide variant not specified [RCV004461506] Chr2:195680383 [GRCh38]
Chr2:196545107 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.2216C>T (p.Ala739Val) single nucleotide variant not specified [RCV004461499] Chr2:195728228 [GRCh38]
Chr2:196592952 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.1010G>A (p.Cys337Tyr) single nucleotide variant not specified [RCV004674680] Chr2:195683700 [GRCh38]
Chr2:196548424 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.536G>A (p.Arg179His) single nucleotide variant not specified [RCV004674681] Chr2:195680578 [GRCh38]
Chr2:196545302 [GRCh37]
Chr2:2q32.3		 likely benign
NM_020342.3(SLC39A10):c.1370T>C (p.Leu457Pro) single nucleotide variant not specified [RCV004674683] Chr2:195706769 [GRCh38]
Chr2:196571493 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.1733A>T (p.Asn578Ile) single nucleotide variant not specified [RCV004674679] Chr2:195716673 [GRCh38]
Chr2:196581397 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.319G>A (p.Asp107Asn) single nucleotide variant not specified [RCV004461504] Chr2:195680361 [GRCh38]
Chr2:196545085 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.521A>G (p.His174Arg) single nucleotide variant not specified [RCV004674677] Chr2:195680563 [GRCh38]
Chr2:196545287 [GRCh37]
Chr2:2q32.3		 uncertain significance
NM_020342.3(SLC39A10):c.475A>G (p.Thr159Ala) single nucleotide variant not specified [RCV004674678] Chr2:195680517 [GRCh38]
Chr2:196545241 [GRCh37]
Chr2:2q32.3		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4966
Count of miRNA genes:931
Interacting mature miRNAs:1150
Transcripts:ENST00000359634, ENST00000409086, ENST00000412905, ENST00000418005, ENST00000430412, ENST00000444421, ENST00000458054, ENST00000464301, ENST00000465851, ENST00000541054
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH92946  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372196,602,229 - 196,602,400UniSTSGRCh37
Build 362196,310,474 - 196,310,645RGDNCBI36
Celera2190,358,094 - 190,358,265RGD
Cytogenetic Map2q32.3UniSTS
HuRef2188,455,035 - 188,455,204UniSTS
GeneMap99-GB4 RH Map2613.71UniSTS
AB060898  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372196,601,492 - 196,601,747UniSTSGRCh37
Build 362196,309,737 - 196,309,992RGDNCBI36
Celera2190,357,349 - 190,357,608RGD
HuRef2188,454,290 - 188,454,549UniSTS
RH69214  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372196,525,186 - 196,525,435UniSTSGRCh37
Build 362196,233,431 - 196,233,680RGDNCBI36
Celera2190,281,058 - 190,281,307RGD
Cytogenetic Map2q32.3UniSTS
HuRef2188,378,119 - 188,378,368UniSTS
GeneMap99-GB4 RH Map2601.63UniSTS
NCBI RH Map21500.6UniSTS
SHGC-36936  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372196,525,511 - 196,525,611UniSTSGRCh37
Build 362196,233,756 - 196,233,856RGDNCBI36
Celera2190,281,383 - 190,281,483RGD
Cytogenetic Map2q32.3UniSTS
HuRef2188,378,444 - 188,378,544UniSTS
GeneMap99-G3 RH Map28737.0UniSTS
DNAH7__4760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372196,602,350 - 196,602,793UniSTSGRCh37
Build 362196,310,595 - 196,311,038RGDNCBI36
Celera2190,358,215 - 190,358,658RGD
HuRef2188,455,154 - 188,455,604UniSTS
WI-21799  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q32.3UniSTS
GeneMap99-GB4 RH Map2607.6UniSTS
Whitehead-RH Map2935.9UniSTS
NCBI RH Map21500.6UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2437 2788 2248 4971 1725 2351 5 622 1949 465 2269 7295 6463 52 3733 851 1741 1616 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005246689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011511507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB033091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC013274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC064834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI693720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL050294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX405756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC073909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX490118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000359634   ⟹   ENSP00000352655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,657,226 - 195,737,700 (+)Ensembl
Ensembl Acc Id: ENST00000409086   ⟹   ENSP00000386766
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,656,747 - 195,737,702 (+)Ensembl
Ensembl Acc Id: ENST00000412905   ⟹   ENSP00000406590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,657,136 - 195,680,158 (+)Ensembl
Ensembl Acc Id: ENST00000418005   ⟹   ENSP00000409272
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,657,449 - 195,680,433 (+)Ensembl
Ensembl Acc Id: ENST00000430412   ⟹   ENSP00000394995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,657,128 - 195,737,702 (+)Ensembl
Ensembl Acc Id: ENST00000444421   ⟹   ENSP00000394469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,656,911 - 195,706,676 (+)Ensembl
Ensembl Acc Id: ENST00000458054   ⟹   ENSP00000389640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,575,977 - 195,680,420 (+)Ensembl
Ensembl Acc Id: ENST00000464301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,657,235 - 195,658,587 (+)Ensembl
Ensembl Acc Id: ENST00000465851
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2195,680,477 - 195,717,383 (+)Ensembl
RefSeq Acc Id: NM_001127257   ⟹   NP_001120729
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,656,958 - 195,737,700 (+)NCBI
GRCh372196,477,798 - 196,602,426 (+)NCBI
Celera2190,277,406 - 190,358,291 (+)RGD
HuRef2188,374,467 - 188,455,230 (+)RGD
CHM1_12196,527,823 - 196,608,722 (+)NCBI
T2T-CHM13v2.02196,141,298 - 196,222,040 (+)NCBI
Sequence:
RefSeq Acc Id: NM_020342   ⟹   NP_065075
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,737,700 (+)NCBI
GRCh372196,477,798 - 196,602,426 (+)NCBI
Build 362196,230,184 - 196,310,663 (+)NCBI Archive
Celera2190,277,406 - 190,358,291 (+)RGD
HuRef2188,374,467 - 188,455,230 (+)RGD
CHM1_12196,528,143 - 196,608,722 (+)NCBI
T2T-CHM13v2.02196,141,566 - 196,222,040 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005246689   ⟹   XP_005246746
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,737,700 (+)NCBI
GRCh372196,477,798 - 196,602,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011511504   ⟹   XP_011509806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,613,029 - 195,737,700 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011511507   ⟹   XP_011509809
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,728,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017004523   ⟹   XP_016860012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,690,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047445141   ⟹   XP_047301097
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,666 - 195,737,700 (+)NCBI
RefSeq Acc Id: XM_047445142   ⟹   XP_047301098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,675,462 - 195,737,700 (+)NCBI
RefSeq Acc Id: XM_047445143   ⟹   XP_047301099
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,737,700 (+)NCBI
RefSeq Acc Id: XM_047445144   ⟹   XP_047301100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,327 - 195,737,700 (+)NCBI
RefSeq Acc Id: XM_054343081   ⟹   XP_054199056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,141,658 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343082   ⟹   XP_054199057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,142,006 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343083   ⟹   XP_054199058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,159,803 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343084   ⟹   XP_054199059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,097,362 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343085   ⟹   XP_054199060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,141,566 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343086   ⟹   XP_054199061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,141,667 - 196,222,040 (+)NCBI
RefSeq Acc Id: XM_054343087   ⟹   XP_054199062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,141,662 - 196,212,465 (+)NCBI
RefSeq Acc Id: XM_054343088   ⟹   XP_054199063
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02196,141,663 - 196,174,533 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001120729 (Get FASTA)   NCBI Sequence Viewer  
  NP_065075 (Get FASTA)   NCBI Sequence Viewer  
  XP_005246746 (Get FASTA)   NCBI Sequence Viewer  
  XP_011509806 (Get FASTA)   NCBI Sequence Viewer  
  XP_011509809 (Get FASTA)   NCBI Sequence Viewer  
  XP_016860012 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301097 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301098 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301099 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301100 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199056 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199057 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199058 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199059 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199060 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199061 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199062 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199063 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH29413 (Get FASTA)   NCBI Sequence Viewer  
  AAH73909 (Get FASTA)   NCBI Sequence Viewer  
  AAI01517 (Get FASTA)   NCBI Sequence Viewer  
  AAI12224 (Get FASTA)   NCBI Sequence Viewer  
  BAA86579 (Get FASTA)   NCBI Sequence Viewer  
  BAC11343 (Get FASTA)   NCBI Sequence Viewer  
  BAF83930 (Get FASTA)   NCBI Sequence Viewer  
  BAG57901 (Get FASTA)   NCBI Sequence Viewer  
  CAB43393 (Get FASTA)   NCBI Sequence Viewer  
  CAD34863 (Get FASTA)   NCBI Sequence Viewer  
  CAH18673 (Get FASTA)   NCBI Sequence Viewer  
  EAW70116 (Get FASTA)   NCBI Sequence Viewer  
  EAW70117 (Get FASTA)   NCBI Sequence Viewer  
  EAW70118 (Get FASTA)   NCBI Sequence Viewer  
  EAW70119 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000352655
  ENSP00000352655.5
  ENSP00000386766
  ENSP00000386766.3
  ENSP00000389640.1
  ENSP00000394469.1
  ENSP00000394995.1
  ENSP00000406590.1
  ENSP00000409272.1
GenBank Protein Q9ULF5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001120729   ⟸   NM_001127257
- Peptide Label: precursor
- UniProtKB: Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot),   Q9ULF5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_065075   ⟸   NM_020342
- Peptide Label: precursor
- UniProtKB: Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot),   Q9ULF5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005246746   ⟸   XM_005246689
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011509806   ⟸   XM_011511504
- Peptide Label: isoform X4
- UniProtKB: Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot),   Q9ULF5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011509809   ⟸   XM_011511507
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016860012   ⟸   XM_017004523
- Peptide Label: isoform X6
- Sequence:
Ensembl Acc Id: ENSP00000352655   ⟸   ENST00000359634
Ensembl Acc Id: ENSP00000406590   ⟸   ENST00000412905
Ensembl Acc Id: ENSP00000409272   ⟸   ENST00000418005
Ensembl Acc Id: ENSP00000394469   ⟸   ENST00000444421
Ensembl Acc Id: ENSP00000389640   ⟸   ENST00000458054
Ensembl Acc Id: ENSP00000394995   ⟸   ENST00000430412
Ensembl Acc Id: ENSP00000386766   ⟸   ENST00000409086
RefSeq Acc Id: XP_047301099   ⟸   XM_047445143
- Peptide Label: isoform X4
- UniProtKB: Q9ULF5 (UniProtKB/Swiss-Prot),   Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047301100   ⟸   XM_047445144
- Peptide Label: isoform X4
- UniProtKB: Q9ULF5 (UniProtKB/Swiss-Prot),   Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047301097   ⟸   XM_047445141
- Peptide Label: isoform X2
RefSeq Acc Id: XP_047301098   ⟸   XM_047445142
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054199059   ⟸   XM_054343084
- Peptide Label: isoform X4
- UniProtKB: Q9ULF5 (UniProtKB/Swiss-Prot),   Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054199060   ⟸   XM_054343085
- Peptide Label: isoform X4
- UniProtKB: Q9ULF5 (UniProtKB/Swiss-Prot),   Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054199056   ⟸   XM_054343081
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054199062   ⟸   XM_054343087
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054199063   ⟸   XM_054343088
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054199061   ⟸   XM_054343086
- Peptide Label: isoform X4
- UniProtKB: Q9ULF5 (UniProtKB/Swiss-Prot),   Q6DKH6 (UniProtKB/Swiss-Prot),   Q68CR5 (UniProtKB/Swiss-Prot),   Q3MJA4 (UniProtKB/Swiss-Prot),   B4DGU0 (UniProtKB/Swiss-Prot),   A8K5C6 (UniProtKB/Swiss-Prot),   Q9Y3Z1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054199057   ⟸   XM_054343082
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054199058   ⟸   XM_054343083
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ULF5-F1-model_v2 AlphaFold Q9ULF5 1-831 view protein structure

Promoters
RGD ID:6862384
Promoter ID:EPDNEW_H4357
Type:initiation region
Name:SLC39A10_3
Description:solute carrier family 39 member 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4358  EPDNEW_H4356  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,656,751 - 195,656,811EPDNEW
RGD ID:6862386
Promoter ID:EPDNEW_H4358
Type:initiation region
Name:SLC39A10_1
Description:solute carrier family 39 member 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H4357  EPDNEW_H4356  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382195,657,226 - 195,657,286EPDNEW
RGD ID:6798183
Promoter ID:HG_KWN:36468
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000409086,   NM_020342,   OTTHUMT00000335187,   OTTHUMT00000335189,   OTTHUMT00000335190,   OTTHUMT00000335192,   OTTHUMT00000335193
Position:
Human AssemblyChrPosition (strand)Source
Build 362196,229,761 - 196,230,392 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:20861 AgrOrtholog
COSMIC SLC39A10 COSMIC
Ensembl Genes ENSG00000196950 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000359634 ENTREZGENE
  ENST00000359634.10 UniProtKB/Swiss-Prot
  ENST00000409086 ENTREZGENE
  ENST00000409086.7 UniProtKB/Swiss-Prot
  ENST00000412905.1 UniProtKB/TrEMBL
  ENST00000418005.1 UniProtKB/TrEMBL
  ENST00000430412.5 UniProtKB/TrEMBL
  ENST00000444421.5 UniProtKB/TrEMBL
  ENST00000458054.1 UniProtKB/TrEMBL
GTEx ENSG00000196950 GTEx
HGNC ID HGNC:20861 ENTREZGENE
Human Proteome Map SLC39A10 Human Proteome Map
InterPro ZIP UniProtKB/Swiss-Prot
  ZIP_Transporter UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:57181 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 57181 ENTREZGENE
OMIM 608733 OMIM
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Zip UniProtKB/Swiss-Prot
PharmGKB PA134944068 PharmGKB
UniProt A8K5C6 ENTREZGENE
  B4DGU0 ENTREZGENE
  C9J0F5_HUMAN UniProtKB/TrEMBL
  E7ENT5_HUMAN UniProtKB/TrEMBL
  E7EV45_HUMAN UniProtKB/TrEMBL
  F2Z341_HUMAN UniProtKB/TrEMBL
  Q05C42_HUMAN UniProtKB/TrEMBL
  Q3MJA4 ENTREZGENE
  Q68CR5 ENTREZGENE
  Q6DKH6 ENTREZGENE
  Q9ULF5 ENTREZGENE
  Q9Y3Z1 ENTREZGENE
  S39AA_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K5C6 UniProtKB/Swiss-Prot
  B4DGU0 UniProtKB/Swiss-Prot
  Q3MJA4 UniProtKB/Swiss-Prot
  Q68CR5 UniProtKB/Swiss-Prot
  Q6DKH6 UniProtKB/Swiss-Prot
  Q9Y3Z1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC39A10  solute carrier family 39 member 10  SLC39A10  solute carrier family 39 (zinc transporter), member 10  Symbol and/or name change 5135510 APPROVED