Notum (notum palmitoleoyl-protein carboxylesterase) - Rat Genome Database

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Gene: Notum (notum palmitoleoyl-protein carboxylesterase) Mus musculus
Analyze
Symbol: Notum
Name: notum palmitoleoyl-protein carboxylesterase
RGD ID: 1316125
MGI Page MGI
Description: Enables lipase activity and palmitoleyl hydrolase activity. Involved in negative regulation of Wnt signaling pathway. Acts upstream of or within bone development; negative regulation of canonical Wnt signaling pathway; and regulation of bone mineralization. Predicted to be located in extracellular region. Is expressed in several structures, including foregut; genitourinary system; primitive streak; respiratory system; and sensory organ. Orthologous to human NOTUM (notum, palmitoleoyl-protein carboxylesterase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730593N15Rik; notum pectinacetylesterase homolog; notum pectinacetylesterase homolog (Drosophila); palmitoleoyl-protein carboxylesterase NOTUM; protein notum homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,544,614 - 120,552,019 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,544,614 - 120,552,001 (-)EnsemblGRCm39 Ensembl
GRCm3811120,653,788 - 120,661,193 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,653,788 - 120,661,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,515,102 - 120,522,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,475,247 - 120,477,905 (+)NCBIMGSCv36mm8
Celera11132,389,181 - 132,396,231 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brain morphology  (IEA)
abnormal bronchus morphology  (IAGP)
abnormal cementum morphology  (IAGP)
abnormal cholesterol homeostasis  (IEA)
abnormal dentin development  (IAGP)
abnormal dentin morphology  (IAGP)
abnormal kidney development  (IAGP)
abnormal kidney morphology  (IEA)
abnormal molar morphology  (IAGP)
abnormal molar root morphology  (IAGP)
abnormal odontoblast morphology  (IAGP)
abnormal periodontal ligament morphology  (IAGP)
abnormal trachea development  (IAGP)
abnormal trachea morphology  (IAGP)
abnormal tracheal cartilage morphology  (IAGP)
abnormal tracheal smooth muscle morphology  (IAGP)
abnormal uterus morphology  (IEA)
anemia  (IAGP)
anophthalmia  (IEA)
apical tooth abscess  (IAGP)
carious teeth  (IAGP)
chronic inflammation  (IAGP)
decreased body fat mass  (IAGP)
decreased body weight  (IAGP)
decreased grip strength  (IEA)
decreased lean body mass  (IAGP)
decreased tracheal cartilage ring number  (IAGP)
dental pulp necrosis  (IAGP)
increased bone mineral density  (IAGP)
increased bone strength  (IAGP)
increased compact bone thickness  (IAGP)
increased femur compact bone thickness  (IAGP)
increased kidney weight  (IAGP)
increased lean body mass  (IAGP)
increased leukocyte cell number  (IAGP)
perinatal lethality  (IAGP)
periodontium inflammation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
single kidney  (IAGP)
small ovary  (IEA)
small spleen  (IEA)
small uterus  (IEA)
trachea stenosis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18429952  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24475213   PMID:25645944   PMID:25771893   PMID:26393505   PMID:26517809   PMID:26926082   PMID:26974334   PMID:29428562  
PMID:30571485   PMID:30622831   PMID:31292548   PMID:31307226   PMID:32541007   PMID:32579931   PMID:33328171   PMID:33647468   PMID:33749332   PMID:34079124   PMID:34223673   PMID:34254395  
PMID:34385484   PMID:34851738   PMID:35831953   PMID:36237181   PMID:37591247   PMID:37873566   PMID:38355793   PMID:38871845  


Genomics

Comparative Map Data
Notum
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,544,614 - 120,552,019 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,544,614 - 120,552,001 (-)EnsemblGRCm39 Ensembl
GRCm3811120,653,788 - 120,661,193 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,653,788 - 120,661,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,515,102 - 120,522,151 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,475,247 - 120,477,905 (+)NCBIMGSCv36mm8
Celera11132,389,181 - 132,396,231 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.38NCBI
NOTUM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,952,507 - 81,961,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,952,507 - 81,961,840 (-)EnsemblGRCh38hg38GRCh38
GRCh371779,910,383 - 79,919,063 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,503,678 - 77,512,353 (-)NCBINCBI36Build 36hg18NCBI36
Celera1776,514,308 - 76,540,092 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,311,107 - 75,319,589 (-)NCBIHuRef
CHM1_11779,996,557 - 80,005,040 (-)NCBICHM1_1
T2T-CHM13v2.01782,819,665 - 82,828,345 (-)NCBIT2T-CHM13v2.0
Notum
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,431,572 - 106,438,654 (-)NCBIGRCr8
mRatBN7.210105,933,245 - 105,940,327 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,933,249 - 105,940,315 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,036,811 - 111,043,850 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,499,852 - 110,506,891 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010105,853,700 - 105,860,766 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010109,832,977 - 109,840,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,832,981 - 109,840,047 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,425,669 - 109,432,739 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,047,040 - 110,054,106 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,061,546 - 110,064,337 (-)NCBI
Celera10104,476,752 - 104,483,846 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Notum
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,203,309 - 1,212,966 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555061,203,309 - 1,212,938 (+)NCBIChiLan1.0ChiLan1.0
NOTUM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,486,375 - 98,496,502 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,387,419 - 103,395,942 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,353,528 - 76,364,634 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,057,344 - 82,074,874 (-)NCBIpanpan1.1PanPan1.1panPan2
NOTUM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19344,648 - 350,676 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9344,020 - 350,368 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9946,787 - 952,790 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09938,019 - 944,016 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9937,352 - 947,429 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19963,161 - 969,164 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,089,807 - 1,095,804 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,168,436 - 1,174,439 (+)NCBIUU_Cfam_GSD_1.0
Notum
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602945,618 - 953,134 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,457,687 - 5,465,162 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,458,825 - 5,465,135 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOTUM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,036,488 - 1,044,397 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,033,814 - 1,044,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103243743
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,826,835 - 73,835,453 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607745,300,039 - 45,308,423 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Notum
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,791,939 - 10,802,463 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480110,795,603 - 10,802,394 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Notum
158 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1533
Count of miRNA genes:544
Interacting mature miRNAs:647
Transcripts:ENSMUST00000055439, ENSMUST00000106177, ENSMUST00000106178, ENSMUST00000150458
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000055439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,544,671 - 120,548,870 (-)Ensembl
GRCm38.p6 Ensembl11120,653,845 - 120,658,044 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106177   ⟹   ENSMUSP00000101783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,544,614 - 120,551,432 (-)Ensembl
GRCm38.p6 Ensembl11120,653,788 - 120,660,606 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106178   ⟹   ENSMUSP00000101784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,544,614 - 120,551,655 (-)Ensembl
GRCm38.p6 Ensembl11120,653,788 - 120,660,829 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150458   ⟹   ENSMUSP00000122788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11120,548,389 - 120,552,001 (-)Ensembl
GRCm38.p6 Ensembl11120,657,563 - 120,661,175 (-)Ensembl
RefSeq Acc Id: NM_001382269   ⟹   NP_001369198
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,552,019 (-)NCBI
GRCm3811120,653,788 - 120,661,193 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001382270   ⟹   NP_001369199
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,552,019 (-)NCBI
GRCm3811120,653,788 - 120,661,193 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001415776   ⟹   NP_001402705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,551,404 (-)NCBI
RefSeq Acc Id: NM_175263   ⟹   NP_780472
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,551,663 (-)NCBI
GRCm3811120,653,788 - 120,660,837 (-)NCBI
MGSCv3711120,515,102 - 120,522,151 (-)RGD
Celera11132,389,181 - 132,396,231 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534497   ⟹   XP_006534560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,551,887 (-)NCBI
GRCm3811120,653,788 - 120,661,055 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249315   ⟹   XP_011247617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911120,544,614 - 120,550,813 (-)NCBI
GRCm3811120,653,788 - 120,659,987 (-)NCBI
Sequence:
RefSeq Acc Id: NP_780472   ⟸   NM_175263
- Peptide Label: isoform 1 precursor
- UniProtKB: A2ABZ5 (UniProtKB/Swiss-Prot),   A2ABZ6 (UniProtKB/Swiss-Prot),   Q8R116 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534560   ⟸   XM_006534497
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011247617   ⟸   XM_011249315
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001369199   ⟸   NM_001382270
- Peptide Label: isoform 2 precursor
RefSeq Acc Id: NP_001369198   ⟸   NM_001382269
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8R116 (UniProtKB/Swiss-Prot),   A2ABZ5 (UniProtKB/Swiss-Prot),   A2ABZ6 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000122788   ⟸   ENSMUST00000150458
Ensembl Acc Id: ENSMUSP00000101783   ⟸   ENSMUST00000106177
Ensembl Acc Id: ENSMUSP00000101784   ⟸   ENSMUST00000106178
RefSeq Acc Id: NP_001402705   ⟸   NM_001415776
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8R116 (UniProtKB/Swiss-Prot),   A2ABZ5 (UniProtKB/Swiss-Prot),   A2ABZ6 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R116-F1-model_v2 AlphaFold Q8R116 1-503 view protein structure

Promoters
RGD ID:6821442
Promoter ID:MM_KWN:10958
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:ENSMUST00000106177,   OTTMUST00000009202,   OTTMUST00000084254
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611120,521,351 - 120,521,851 (-)MPROMDB
RGD ID:8677722
Promoter ID:EPDNEW_M16892
Type:single initiation site
Name:Notum_1
Description:Mus musculus notum palmitoleoyl-protein carboxylesterase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811120,660,780 - 120,660,840EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924833 AgrOrtholog
Ensembl Genes ENSMUSG00000042988 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000106177 ENTREZGENE
  ENSMUST00000106177.8 UniProtKB/Swiss-Prot
  ENSMUST00000106178 ENTREZGENE
  ENSMUST00000106178.9 UniProtKB/Swiss-Prot
  ENSMUST00000150458.2 UniProtKB/TrEMBL
InterPro PAE/NOTUM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77583 UniProtKB/Swiss-Prot
MGD MGI:1924833 ENTREZGENE
NCBI Gene 77583 ENTREZGENE
PANTHER PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21562 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PAE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Notum PhenoGen
UniProt A2ABZ5 ENTREZGENE
  A2ABZ6 ENTREZGENE
  B7ZCA6_MOUSE UniProtKB/TrEMBL
  NOTUM_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A2ABZ5 UniProtKB/Swiss-Prot
  A2ABZ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-31 Notum  notum palmitoleoyl-protein carboxylesterase    notum pectinacetylesterase homolog (Drosophila)  Symbol and/or name change 5135510 APPROVED