Chd1 (chromodomain helicase DNA binding protein 1) - Rat Genome Database

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Gene: Chd1 (chromodomain helicase DNA binding protein 1) Mus musculus
Analyze
Symbol: Chd1
Name: chromodomain helicase DNA binding protein 1
RGD ID: 1315611
MGI Page MGI
Description: Predicted to enable several functions, including ATP hydrolysis activity; ATP-dependent chromatin remodeler activity; and methylated histone binding activity. Acts upstream of or within chromatin remodeling. Predicted to be located in chromatin and cytoplasm. Predicted to be active in nucleus. Is expressed in early conceptus and primary oocyte. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930525N21Rik; AI851787; ATP-dependent helicase CHD1; AW555109; CHD-1; chromodomain-helicase-DNA-binding protein 1; MGC141554
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,925,229 - 15,992,874 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,925,229 - 15,992,872 (+)EnsemblGRCm39 Ensembl
GRCm381715,704,967 - 15,772,612 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,704,967 - 15,772,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,841,931 - 15,909,576 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361715,409,980 - 15,475,054 (+)NCBIMGSCv36mm8
Celera1716,497,340 - 16,562,836 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA)
cytoplasm  (IEA,ISO)
nuclear chromosome  (IEA,ISO)
nucleus  (IBA,ISO,NAS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The mutational landscape of lethal castration-resistant prostate cancer. Grasso CS, etal., Nature. 2012 Jul 12;487(7406):239-43. doi: 10.1038/nature11125.
2. Recurrent deletion of CHD1 in prostate cancer with relevance to cell invasiveness. Huang S, etal., Oncogene. 2012 Sep 13;31(37):4164-70. doi: 10.1038/onc.2011.590. Epub 2011 Dec 19.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Readout of epigenetic modifications. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8460153   PMID:8889548   PMID:9326634   PMID:10199952   PMID:10349636   PMID:10655032   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932  
PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:16415155   PMID:17967808   PMID:18799693   PMID:19587682   PMID:19841136   PMID:19855082   PMID:20362542   PMID:21677750  
PMID:21873635   PMID:21979373   PMID:22794259   PMID:23948251   PMID:24737864   PMID:24982181   PMID:25480920   PMID:25620209   PMID:25831528   PMID:26092847   PMID:27626380   PMID:28383660  
PMID:30728766   PMID:30930119   PMID:31883643   PMID:32115152   PMID:32385075   PMID:33022763   PMID:33554859   PMID:34381042   PMID:36343752   PMID:38355793  


Genomics

Comparative Map Data
Chd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391715,925,229 - 15,992,874 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1715,925,229 - 15,992,872 (+)EnsemblGRCm39 Ensembl
GRCm381715,704,967 - 15,772,612 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1715,704,967 - 15,772,610 (+)EnsemblGRCm38mm10GRCm38
MGSCv371715,841,931 - 15,909,576 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361715,409,980 - 15,475,054 (+)NCBIMGSCv36mm8
Celera1716,497,340 - 16,562,836 (+)NCBICelera
Cytogenetic Map17A2NCBI
cM Map178.95NCBI
CHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38598,853,985 - 98,929,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl598,853,985 - 98,929,007 (-)EnsemblGRCh38hg38GRCh38
GRCh37598,189,689 - 98,264,711 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36598,218,808 - 98,290,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 34598,219,348 - 98,290,140NCBI
Celera594,075,038 - 94,146,342 (-)NCBICelera
Cytogenetic Map5q15-q21.1NCBI
HuRef593,378,590 - 93,449,621 (-)NCBIHuRef
CHM1_1597,623,527 - 97,694,866 (-)NCBICHM1_1
T2T-CHM13v2.0599,357,270 - 99,432,327 (-)NCBIT2T-CHM13v2.0
Chd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8165,334,905 - 65,402,270 (+)NCBIGRCr8
mRatBN7.2156,661,743 - 56,729,119 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl156,664,054 - 56,728,125 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,508,921 - 61,572,830 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0170,172,494 - 70,236,407 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0163,418,895 - 63,482,804 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0157,692,828 - 57,756,762 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl157,692,836 - 57,755,485 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,619,223 - 58,683,477 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,594,860 - 54,631,157 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1154,565,816 - 54,634,109 (+)NCBI
Celera152,866,469 - 52,930,419 (+)NCBICelera
Cytogenetic Map1q12NCBI
Chd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541814,200,617 - 14,268,361 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541814,200,618 - 14,268,361 (+)NCBIChiLan1.0ChiLan1.0
CHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2494,105,319 - 94,179,266 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1592,256,234 - 92,332,806 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0594,165,414 - 94,238,836 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1599,719,858 - 99,790,411 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl599,721,032 - 99,790,263 (-)Ensemblpanpan1.1panPan2
CHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1311,288,873 - 11,359,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl311,288,244 - 11,359,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha312,628,640 - 12,702,491 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0311,176,524 - 11,250,420 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl311,176,403 - 11,249,017 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1311,126,127 - 11,200,027 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0311,133,031 - 11,206,864 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0311,334,612 - 11,408,529 (+)NCBIUU_Cfam_GSD_1.0
Chd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213166,760,555 - 166,832,642 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365234,945,650 - 5,018,145 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365234,945,650 - 5,016,209 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2105,113,668 - 105,203,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12105,113,149 - 105,205,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22108,968,149 - 109,066,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,433,694 - 2,507,334 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl232,432,461 - 2,507,704 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603611,977,236 - 12,048,790 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474317,311,167 - 17,380,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chd1
2172 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2713
Count of miRNA genes:781
Interacting mature miRNAs:1079
Transcripts:ENSMUST00000024627, ENSMUST00000173040, ENSMUST00000173159, ENSMUST00000173311, ENSMUST00000174461
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
4142507Obrq13_mobesity resistance QTL 13 (mouse)Not determined1219832925076769Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1357452Vtbt18_mvertebral trabecular bone trait 18 (mouse)Not determined17120975022Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
1302196Myaa1_mmodifier of Yaa 1 (mouse)Not determined17120975022Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse

Markers in Region
AW555109  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,771,263 - 15,771,389UniSTSGRCm38
MGSCv371715,908,227 - 15,908,353UniSTSGRCm37
Celera1716,561,491 - 16,561,617UniSTS
Cytogenetic Map17A2UniSTS
cM Map177.2UniSTS
Whitehead/MRC_RH17218.43UniSTS
AI851787  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,772,436 - 15,772,575UniSTSGRCm38
MGSCv371715,909,400 - 15,909,539UniSTSGRCm37
Celera1716,562,660 - 16,562,799UniSTS
Cytogenetic Map17A2UniSTS
cM Map177.2UniSTS
Whitehead/MRC_RH17219.45UniSTS
RH141493  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,755,838 - 15,756,043UniSTSGRCm38
MGSCv371715,892,802 - 15,893,007UniSTSGRCm37
Celera1716,546,072 - 16,546,277UniSTS
Cytogenetic Map17A2UniSTS
cM Map177.2UniSTS
D17Jcs21  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,756,389 - 15,756,581UniSTSGRCm38
MGSCv371715,893,353 - 15,893,545UniSTSGRCm37
Celera1716,546,624 - 16,546,808UniSTS
Cytogenetic Map17A2UniSTS
cM Map17 UniSTS
MARC_15733-15734:1013528717:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381715,742,264 - 15,743,180UniSTSGRCm38
MGSCv371715,879,228 - 15,880,144UniSTSGRCm37
Celera1716,532,554 - 16,533,469UniSTS
Cytogenetic Map17A2UniSTS
cM Map177.2UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_007690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC115822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT033750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L10410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000024627   ⟹   ENSMUSP00000024627
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,925,229 - 15,992,872 (+)Ensembl
GRCm38.p6 Ensembl1715,704,967 - 15,772,610 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173040   ⟹   ENSMUSP00000133406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,977,027 - 15,981,597 (+)Ensembl
GRCm38.p6 Ensembl1715,756,765 - 15,761,335 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,925,280 - 15,952,170 (+)Ensembl
GRCm38.p6 Ensembl1715,705,018 - 15,731,908 (+)Ensembl
Ensembl Acc Id: ENSMUST00000173311   ⟹   ENSMUSP00000134091
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,925,236 - 15,973,254 (+)Ensembl
GRCm38.p6 Ensembl1715,704,974 - 15,752,992 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174461   ⟹   ENSMUSP00000134718
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1715,958,797 - 15,975,610 (+)Ensembl
GRCm38.p6 Ensembl1715,738,535 - 15,755,348 (+)Ensembl
RefSeq Acc Id: NM_007690   ⟹   NP_031716
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,925,229 - 15,992,874 (+)NCBI
GRCm381715,704,967 - 15,772,612 (+)ENTREZGENE
MGSCv371715,841,931 - 15,909,576 (+)RGD
Celera1716,497,340 - 16,562,836 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036160289   ⟹   XP_036016182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391715,925,242 - 15,976,597 (+)NCBI
Sequence:
RefSeq Acc Id: NP_031716   ⟸   NM_007690
- UniProtKB: Q14BJ0 (UniProtKB/Swiss-Prot),   P40201 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000134718   ⟸   ENSMUST00000174461
Ensembl Acc Id: ENSMUSP00000134091   ⟸   ENSMUST00000173311
Ensembl Acc Id: ENSMUSP00000133406   ⟸   ENSMUST00000173040
Ensembl Acc Id: ENSMUSP00000024627   ⟸   ENSMUST00000024627
RefSeq Acc Id: XP_036016182   ⟸   XM_036160289
- Peptide Label: isoform X1
- UniProtKB: Q8C7Q2 (UniProtKB/TrEMBL)
Protein Domains
CDH1/2 SANT-Helical linker   Chromo   Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P40201-F1-model_v2 AlphaFold P40201 1-1711 view protein structure

Promoters
RGD ID:13674834
Promoter ID:EPDNEW_M21566
Type:initiation region
Name:Chd1_1
Description:Mus musculus chromodomain helicase DNA binding protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381715,704,983 - 15,705,043EPDNEW
RGD ID:6827711
Promoter ID:MM_KWN:22241
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK017967_5830433I10RIK,   NM_007690,   UC008AOT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361715,841,301 - 15,842,737 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88393 AgrOrtholog
Ensembl Genes ENSMUSG00000023852 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024627 ENTREZGENE
  ENSMUST00000024627.14 UniProtKB/Swiss-Prot
  ENSMUST00000173040.2 UniProtKB/TrEMBL
  ENSMUST00000173311 ENTREZGENE
  ENSMUST00000173311.8 UniProtKB/TrEMBL
  ENSMUST00000174461.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.10810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CDH1_2_SANT_HL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4208 UniProtKB/Swiss-Prot
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12648 UniProtKB/Swiss-Prot
MGD MGI:88393 ENTREZGENE
NCBI Gene 12648 ENTREZGENE
PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDH1_2_SANT_HL1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chromo UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4208 UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNF2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chd1 PhenoGen
PROSITE CHROMO_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CHROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF4208 UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CHD1_MOUSE UniProtKB/Swiss-Prot
  G3UWS6_MOUSE UniProtKB/TrEMBL
  G3V014_MOUSE UniProtKB/TrEMBL
  P40201 ENTREZGENE
  Q14BJ0 ENTREZGENE
  Q3UQG5_MOUSE UniProtKB/TrEMBL
  Q3USG6_MOUSE UniProtKB/TrEMBL
  Q8C7Q2 ENTREZGENE, UniProtKB/TrEMBL
  Q8C9F3_MOUSE UniProtKB/TrEMBL
  Q9CRD9_MOUSE UniProtKB/TrEMBL
  Q9D5K6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q14BJ0 UniProtKB/Swiss-Prot