Sgcd (sarcoglycan, delta (dystrophin-associated glycoprotein)) - Rat Genome Database

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Gene: Sgcd (sarcoglycan, delta (dystrophin-associated glycoprotein)) Mus musculus
Analyze
Symbol: Sgcd
Name: sarcoglycan, delta (dystrophin-associated glycoprotein)
RGD ID: 1315367
MGI Page MGI
Description: Acts upstream of or within several processes, including calcium-mediated signaling; cardiac muscle cell contraction; and heart development. Located in sarcolemma and sarcoplasmic reticulum. Part of sarcoglycan complex. Is expressed in brain; dentate gyrus subgranular zone; mandible; and maxilla. Used to study autosomal recessive limb-girdle muscular dystrophy type 2F and dilated cardiomyopathy 1L. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2F; dilated cardiomyopathy 1L; and muscular dystrophy. Orthologous to human SGCD (sarcoglycan delta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 35 kDa dystrophin-associated glycoprotein; 35DAG; 35kDa; A530047J11; A530047J11Rik; AI504364; AW547581; delta; delta-sarcoglycan; delta-SG; hypothetical protein LOC103767; RIKEN cDNA A530047J11 gene; sarcoglycan, delta (35kD dystrophin-associated glycoprotein); SG-delta; uncharacterized protein LOC103767
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,861,904 - 47,880,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1146,787,080 - 47,879,796 (-)EnsemblGRCm39 Ensembl
GRCm381146,971,077 - 47,989,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,896,253 - 47,988,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,792,285 - 47,192,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361146,822,206 - 47,222,725 (-)NCBIMGSCv36mm8
Celera1151,565,425 - 51,970,242 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Disruption of the sarcoglycan-sarcospan complex in vascular smooth muscle: a novel mechanism for cardiomyopathy and muscular dystrophy. Coral-Vazquez R, etal., Cell. 1999 Aug 20;98(4):465-74.
2. Prevention of cardiomyopathy in delta-sarcoglycan knockout mice after systemic transfer of targeted adeno-associated viral vectors. Goehringer C, etal., Cardiovasc Res. 2009 Jun 1;82(3):404-10. doi: 10.1093/cvr/cvp061. Epub 2009 Feb 13.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Myocardial Contractile Dysfunction Is Present without Histopathology in a Mouse Model of Limb-Girdle Muscular Dystrophy-2F and Is Prevented after Claudin-5 Virotherapy. Milani-Nejad N, etal., Front Physiol. 2016 Dec 6;7:539. doi: 10.3389/fphys.2016.00539. eCollection 2016.
5. Autosomal recessive limb-girdle muscular dystrophy, LGMD2F, is caused by a mutation in the delta-sarcoglycan gene. Nigro V, etal., Nat Genet. 1996 Oct;14(2):195-8.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. S151A d-sarcoglycan mutation causes a mild phenotype of cardiomyopathy in mice. Rutschow D, etal., Eur J Hum Genet. 2014 Jan;22(1):119-25. doi: 10.1038/ejhg.2013.97. Epub 2013 May 22.
Additional References at PubMed
PMID:1461282   PMID:9864373   PMID:10349636   PMID:10448073   PMID:10488149   PMID:10678176   PMID:10679964   PMID:10862711   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11160141  
PMID:11217851   PMID:11257478   PMID:12087055   PMID:12189167   PMID:12466851   PMID:12477932   PMID:14871549   PMID:14982859   PMID:14991064   PMID:16084087   PMID:16141072   PMID:16141073  
PMID:16306063   PMID:16403451   PMID:16524571   PMID:16723712   PMID:17150187   PMID:17164264   PMID:17255329   PMID:17289669   PMID:17525297   PMID:18246866   PMID:18345011   PMID:18495669  
PMID:18535179   PMID:19083155   PMID:19131360   PMID:19470472   PMID:19494113   PMID:19834057   PMID:19864620   PMID:19931597   PMID:20638123   PMID:20934875   PMID:21125668   PMID:21138941  
PMID:21267068   PMID:21285509   PMID:21289070   PMID:21665956   PMID:21677750   PMID:21873635   PMID:22308238   PMID:22328522   PMID:22711826   PMID:22937058   PMID:23437355   PMID:24154525  
PMID:24312627   PMID:24556214   PMID:24662047   PMID:24876160   PMID:24952961   PMID:25106553   PMID:25284161   PMID:25605665   PMID:25692961   PMID:26744329   PMID:26929074   PMID:27669143  
PMID:28587652   PMID:28797108   PMID:30143409   PMID:30216109   PMID:30673749   PMID:30964448   PMID:31393098   PMID:31430305   PMID:31689918   PMID:32325033   PMID:35618700   PMID:37358754  
PMID:37624892   PMID:38678560  


Genomics

Comparative Map Data
Sgcd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,861,904 - 47,880,309 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1146,787,080 - 47,879,796 (-)EnsemblGRCm39 Ensembl
GRCm381146,971,077 - 47,989,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,896,253 - 47,988,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,792,285 - 47,192,804 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361146,822,206 - 47,222,725 (-)NCBIMGSCv36mm8
Celera1151,565,425 - 51,970,242 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
SGCD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385155,727,832 - 156,767,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5155,870,344 - 156,767,788 (+)EnsemblGRCh38hg38GRCh38
GRCh375155,754,174 - 156,194,799 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365155,686,345 - 156,125,639 (+)NCBINCBI36Build 36hg18NCBI36
Build 345155,686,344 - 156,117,646NCBI
Celera5151,779,805 - 152,220,524 (+)NCBICelera
Cytogenetic Map5q33.2-q33.3NCBI
HuRef5150,847,340 - 151,288,441 (+)NCBIHuRef
CHM1_15155,186,188 - 155,627,222 (+)NCBICHM1_1
T2T-CHM13v2.05156,261,684 - 157,286,763 (+)NCBIT2T-CHM13v2.0
Sgcd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81031,847,713 - 32,829,554 (-)NCBIGRCr8
mRatBN7.21031,346,480 - 32,328,364 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1031,280,511 - 31,724,840 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1036,077,225 - 36,471,243 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0104,615,625 - 5,009,663 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01031,062,074 - 31,463,752 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01032,062,946 - 32,471,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1032,062,946 - 32,471,454 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01031,878,904 - 32,285,036 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41032,084,678 - 32,489,330 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1030,793,915 - 31,190,298 (-)NCBICelera
Cytogenetic Map10q21NCBI
Sgcd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540810,273,223 - 10,819,072 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540810,273,344 - 10,820,108 (+)NCBIChiLan1.0ChiLan1.0
SGCD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24150,925,175 - 151,958,431 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15149,065,868 - 150,104,107 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05151,131,909 - 152,164,077 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15157,119,158 - 158,148,016 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5157,719,540 - 158,139,633 (+)Ensemblpanpan1.1panPan2
SGCD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1453,259,332 - 54,178,228 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl453,263,866 - 53,820,231 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha453,151,553 - 54,062,671 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0453,696,389 - 54,612,269 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl453,701,146 - 54,093,152 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1453,521,774 - 54,443,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0453,631,480 - 54,544,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0454,146,275 - 55,057,219 (-)NCBIUU_Cfam_GSD_1.0
Sgcd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,825,301 - 108,458,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365156,283,051 - 6,908,174 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365156,278,631 - 6,908,193 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGCD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1666,452,178 - 66,887,924 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11666,447,982 - 67,481,709 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21672,423,126 - 72,526,427 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SGCD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12358,095,013 - 59,177,752 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603418,457,325 - 19,501,690 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgcd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473332,663,025 - 33,080,608 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473332,654,754 - 33,626,227 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgcd
34002 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:677
Count of miRNA genes:466
Interacting mature miRNAs:528
Transcripts:ENSMUST00000077221, ENSMUST00000109220, ENSMUST00000128558, ENSMUST00000154578
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114277262654081064Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse

Markers in Region
48.MMHAP33FLH6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381147,137,561 - 47,137,662UniSTSGRCm38
MGSCv371146,951,063 - 46,951,164UniSTSGRCm37
Celera1151,728,655 - 51,728,756UniSTS
Cytogenetic Map11B1.2UniSTS
Whitehead_YAC11 UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB024923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI115769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI504364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW547581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB218047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC130019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX005243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX324120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000077221   ⟹   ENSMUSP00000076459
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,869,612 - 47,270,349 (-)Ensembl
GRCm38.p6 Ensembl1146,978,785 - 47,379,522 (-)Ensembl
Ensembl Acc Id: ENSMUST00000109220   ⟹   ENSMUSP00000104843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,787,080 - 47,469,792 (-)Ensembl
GRCm38.p6 Ensembl1146,896,253 - 47,578,965 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1147,469,632 - 47,879,796 (-)Ensembl
GRCm38.p6 Ensembl1147,578,805 - 47,988,969 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154578
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1147,241,981 - 47,528,296 (-)Ensembl
GRCm38.p6 Ensembl1147,351,154 - 47,637,469 (-)Ensembl
RefSeq Acc Id: NM_011891   ⟹   NP_036021
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,861,906 - 47,270,152 (-)NCBI
GRCm381146,971,079 - 47,379,325 (-)NCBI
MGSCv371146,792,285 - 47,192,804 (-)RGD
Celera1151,565,425 - 51,970,242 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533306   ⟹   XP_006533369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,861,904 - 47,880,309 (-)NCBI
GRCm381146,971,077 - 47,989,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006533307   ⟹   XP_006533370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,861,904 - 47,880,278 (-)NCBI
GRCm381146,971,077 - 47,989,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156699   ⟹   XP_036012592
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,861,904 - 47,880,278 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156700   ⟹   XP_036012593
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,861,904 - 47,880,278 (-)NCBI
Sequence:
RefSeq Acc Id: NP_036021   ⟸   NM_011891
- UniProtKB: P82347 (UniProtKB/Swiss-Prot),   Q544D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533370   ⟸   XM_006533307
- Peptide Label: isoform X1
- UniProtKB: P82347 (UniProtKB/Swiss-Prot),   Q544D4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533369   ⟸   XM_006533306
- Peptide Label: isoform X1
- UniProtKB: P82347 (UniProtKB/Swiss-Prot),   Q544D4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000104843   ⟸   ENSMUST00000109220
Ensembl Acc Id: ENSMUSP00000076459   ⟸   ENSMUST00000077221
RefSeq Acc Id: XP_036012593   ⟸   XM_036156700
- Peptide Label: isoform X1
- UniProtKB: P82347 (UniProtKB/Swiss-Prot),   Q544D4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036012592   ⟸   XM_036156699
- Peptide Label: isoform X1
- UniProtKB: P82347 (UniProtKB/Swiss-Prot),   Q544D4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P82347-F1-model_v2 AlphaFold P82347 1-289 view protein structure

Promoters
RGD ID:6822087
Promoter ID:MM_KWN:7124
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000077221,   ENSMUST00000109219
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361147,192,521 - 47,193,021 (-)MPROMDB
RGD ID:8674420
Promoter ID:EPDNEW_M15241
Type:initiation region
Name:Sgcd_1
Description:Mus musculus sarcoglycan, delta (dystrophin-associated glycoprotein), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15242  EPDNEW_M15243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381147,379,322 - 47,379,382EPDNEW
RGD ID:8674424
Promoter ID:EPDNEW_M15242
Type:single initiation site
Name:Sgcd_3
Description:Mus musculus sarcoglycan, delta (dystrophin-associated glycoprotein), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15241  EPDNEW_M15243  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381147,663,070 - 47,663,130EPDNEW
RGD ID:8674426
Promoter ID:EPDNEW_M15243
Type:initiation region
Name:Sgcd_2
Description:Mus musculus sarcoglycan, delta (dystrophin-associated glycoprotein), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15241  EPDNEW_M15242  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381147,988,969 - 47,989,029EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1346525 AgrOrtholog
Ensembl Genes ENSMUSG00000020354 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077221 ENTREZGENE
  ENSMUST00000077221.6 UniProtKB/Swiss-Prot
  ENSMUST00000109220.8 UniProtKB/TrEMBL
InterPro Sarcoglycan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sarcoglycan_gamma/delta/zeta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:24052 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1346525 ENTREZGENE
NCBI Gene 24052 ENTREZGENE
PANTHER PTHR12939 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12939:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sarcoglycan_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgcd PhenoGen
UniProt A2ACH6_MOUSE UniProtKB/TrEMBL
  P82347 ENTREZGENE
  Q544D4 ENTREZGENE, UniProtKB/TrEMBL
  SGCD_MOUSE UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-07-10 Sgcd  sarcoglycan, delta (dystrophin-associated glycoprotein)  A530047J11Rik  RIKEN cDNA A530047J11 gene  Data merged from RGD:1608495 737654 PROVISIONAL