Lrif1 (ligand dependent nuclear receptor interacting factor 1) - Rat Genome Database

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Gene: Lrif1 (ligand dependent nuclear receptor interacting factor 1) Mus musculus
Analyze
Symbol: Lrif1
Name: ligand dependent nuclear receptor interacting factor 1
RGD ID: 1315185
MGI Page MGI
Description: Predicted to enable nuclear retinoic acid receptor binding activity. Predicted to be involved in dosage compensation by inactivation of X chromosome. Located in Barr body. Human ortholog(s) of this gene implicated in facioscapulohumeral muscular dystrophy 3. Orthologous to human LRIF1 (ligand dependent nuclear receptor interacting factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010012G17Rik; 4933421E11Rik; AI450568; ligand-dependent nuclear receptor-interacting factor 1; receptor-interacting factor 1; Rif1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393106,592,256 - 106,643,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3106,592,303 - 106,643,893 (+)EnsemblGRCm39 Ensembl
GRCm383106,684,942 - 106,736,577 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3106,684,987 - 106,736,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv373106,487,905 - 106,539,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363106,813,043 - 106,864,633 (+)NCBIMGSCv36mm8
Celera3109,014,195 - 109,065,756 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.52NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  
PMID:21873635   PMID:26391951   PMID:29795351   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Lrif1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393106,592,256 - 106,643,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3106,592,303 - 106,643,893 (+)EnsemblGRCm39 Ensembl
GRCm383106,684,942 - 106,736,577 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3106,684,987 - 106,736,577 (+)EnsemblGRCm38mm10GRCm38
MGSCv373106,487,905 - 106,539,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363106,813,043 - 106,864,633 (+)NCBIMGSCv36mm8
Celera3109,014,195 - 109,065,756 (+)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.52NCBI
LRIF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,874,957 - 110,963,922 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,947,190 - 110,963,965 (-)EnsemblGRCh38hg38GRCh38
GRCh371111,489,812 - 111,506,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361111,291,335 - 111,308,089 (-)NCBINCBI36Build 36hg18NCBI36
Celera1109,736,827 - 109,753,586 (-)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1109,361,082 - 109,377,847 (-)NCBIHuRef
CHM1_11111,604,955 - 111,621,714 (-)NCBICHM1_1
T2T-CHM13v2.01110,888,014 - 110,978,737 (-)NCBIT2T-CHM13v2.0
Lrif1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82196,919,606 - 197,010,713 (+)NCBIGRCr8
mRatBN7.22194,231,397 - 194,322,489 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2194,230,951 - 194,322,483 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2201,940,483 - 201,955,702 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02199,821,012 - 199,836,011 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02194,637,976 - 194,652,979 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02209,358,668 - 209,448,123 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2209,358,760 - 209,448,123 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02228,824,841 - 228,915,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42202,141,413 - 202,156,437 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12202,114,300 - 202,118,423 (+)NCBI
Celera2186,977,203 - 186,992,223 (+)NCBICelera
Cytogenetic Map2q34NCBI
Lrif1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543514,469,488 - 14,484,632 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543514,467,123 - 14,485,109 (-)NCBIChiLan1.0ChiLan1.0
LRIF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,074,468 - 116,165,837 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11115,222,961 - 115,244,582 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01113,523,567 - 113,611,043 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11126,736,014 - 126,822,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1126,736,039 - 126,752,907 (+)Ensemblpanpan1.1panPan2
LRIF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,023,383 - 41,041,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,023,787 - 41,039,844 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha643,800,911 - 43,817,578 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0641,355,242 - 41,371,890 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl641,355,239 - 41,373,594 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1641,075,870 - 41,092,367 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,046,009 - 41,062,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0641,481,388 - 41,498,059 (+)NCBIUU_Cfam_GSD_1.0
Lrif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505817,780,265 - 17,800,223 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367042,319,145 - 2,333,400 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367042,313,923 - 2,334,839 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRIF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4109,271,728 - 109,292,310 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14109,271,562 - 109,292,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24119,639,087 - 119,657,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LRIF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12022,598,160 - 22,614,752 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2022,598,124 - 22,617,024 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603835,852,586 - 35,869,524 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrif1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247726,713,055 - 6,733,608 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247726,713,224 - 6,733,841 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrif1
1902 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1148
Count of miRNA genes:437
Interacting mature miRNAs:508
Transcripts:ENSMUST00000098750, ENSMUST00000098751, ENSMUST00000106736, ENSMUST00000106737, ENSMUST00000122928, ENSMUST00000127003, ENSMUST00000130105, ENSMUST00000131330, ENSMUST00000150513, ENSMUST00000150888, ENSMUST00000154973, ENSMUST00000156544
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
AI450568  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383106,736,250 - 106,736,425UniSTSGRCm38
MGSCv373106,539,168 - 106,539,343UniSTSGRCm37
Celera3109,065,429 - 109,065,604UniSTS
Cytogenetic Map3F2.3UniSTS
Whitehead/MRC_RH31186.12UniSTS
px-24g4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map3H2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map3F2.3UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map12B1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map15A1UniSTS
Cytogenetic Map16C3.3UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic Map10D1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map17E2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map17CUniSTS
cM Map91.0UniSTS
cM Map316.4UniSTS
cM Map1740.0UniSTS
cM Map1354.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001039488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC117255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB611412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB617106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE954122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN174290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000098750   ⟹   ENSMUSP00000096346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,252 - 106,643,890 (+)Ensembl
GRCm38.p6 Ensembl3106,721,936 - 106,736,574 (+)Ensembl
Ensembl Acc Id: ENSMUST00000098751   ⟹   ENSMUSP00000096347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,592,303 - 106,643,220 (+)Ensembl
GRCm38.p6 Ensembl3106,684,987 - 106,735,904 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106736   ⟹   ENSMUSP00000102347
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,209 - 106,643,893 (+)Ensembl
GRCm38.p6 Ensembl3106,721,893 - 106,736,577 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,242 - 106,640,903 (+)Ensembl
GRCm38.p6 Ensembl3106,721,926 - 106,733,587 (+)Ensembl
Ensembl Acc Id: ENSMUST00000122928
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,241 - 106,641,934 (+)Ensembl
GRCm38.p6 Ensembl3106,721,925 - 106,734,618 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127003   ⟹   ENSMUSP00000114163
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,209 - 106,641,698 (+)Ensembl
GRCm38.p6 Ensembl3106,721,893 - 106,734,382 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130105   ⟹   ENSMUSP00000115110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,044 - 106,639,527 (+)Ensembl
GRCm38.p6 Ensembl3106,721,728 - 106,732,211 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131330
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,242 - 106,633,978 (+)Ensembl
GRCm38.p6 Ensembl3106,721,926 - 106,726,662 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150513   ⟹   ENSMUSP00000119815
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,283 - 106,639,379 (+)Ensembl
GRCm38.p6 Ensembl3106,721,967 - 106,732,063 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150888
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,640,230 - 106,641,143 (+)Ensembl
GRCm38.p6 Ensembl3106,732,914 - 106,733,827 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154973   ⟹   ENSMUSP00000120350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,629,224 - 106,639,365 (+)Ensembl
GRCm38.p6 Ensembl3106,721,908 - 106,732,049 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3106,592,314 - 106,639,514 (+)Ensembl
GRCm38.p6 Ensembl3106,684,998 - 106,732,198 (+)Ensembl
RefSeq Acc Id: NM_001039478   ⟹   NP_001034567
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,303 - 106,643,893 (+)NCBI
GRCm383106,684,987 - 106,736,577 (+)NCBI
MGSCv373106,487,905 - 106,539,495 (+)RGD
Celera3109,014,195 - 109,065,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001039488   ⟹   NP_001034577
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,998 - 106,643,893 (+)NCBI
GRCm383106,721,682 - 106,736,577 (+)NCBI
MGSCv373106,487,905 - 106,539,495 (+)RGD
Celera3109,014,195 - 109,065,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001286685   ⟹   NP_001273614
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,998 - 106,643,893 (+)NCBI
GRCm383106,721,682 - 106,736,577 (+)NCBI
Celera3109,014,195 - 109,065,756 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028081   ⟹   NP_082357
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,998 - 106,643,893 (+)NCBI
GRCm383106,721,682 - 106,736,577 (+)NCBI
MGSCv373106,487,905 - 106,539,495 (+)RGD
Celera3109,014,195 - 109,065,756 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501581   ⟹   XP_006501644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,259 - 106,643,893 (+)NCBI
GRCm383106,684,942 - 106,736,554 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006501584   ⟹   XP_006501647
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,903 - 106,643,893 (+)NCBI
GRCm383106,721,581 - 106,736,577 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240140   ⟹   XP_011238442
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,889 - 106,643,893 (+)NCBI
GRCm383106,721,570 - 106,736,003 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017319616   ⟹   XP_017175105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,256 - 106,643,893 (+)NCBI
GRCm383106,685,085 - 106,736,577 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163134   ⟹   XP_036019027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,259 - 106,643,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163135   ⟹   XP_036019028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,889 - 106,643,893 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163136   ⟹   XP_036019029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,628,889 - 106,643,893 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954331
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,256 - 106,643,893 (+)NCBI
GRCm383106,685,083 - 106,736,577 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003954332
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393106,592,256 - 106,643,893 (+)NCBI
GRCm383106,685,083 - 106,736,577 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001034567   ⟸   NM_001039478
- Peptide Label: isoform 3
- UniProtKB: G3X9P5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001034577   ⟸   NM_001039488
- Peptide Label: isoform 1
- UniProtKB: Q149J0 (UniProtKB/Swiss-Prot),   Q8C893 (UniProtKB/Swiss-Prot),   Q8CDD9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_082357   ⟸   NM_028081
- Peptide Label: isoform 2
- UniProtKB: G5E8M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001273614   ⟸   NM_001286685
- Peptide Label: isoform 2
- UniProtKB: G5E8M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501644   ⟸   XM_006501581
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006501647   ⟸   XM_006501584
- Peptide Label: isoform X4
- UniProtKB: G5E8M8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238442   ⟸   XM_011240140
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017175105   ⟸   XM_017319616
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000119815   ⟸   ENSMUST00000150513
Ensembl Acc Id: ENSMUSP00000115110   ⟸   ENSMUST00000130105
Ensembl Acc Id: ENSMUSP00000114163   ⟸   ENSMUST00000127003
Ensembl Acc Id: ENSMUSP00000102347   ⟸   ENSMUST00000106736
Ensembl Acc Id: ENSMUSP00000120350   ⟸   ENSMUST00000154973
Ensembl Acc Id: ENSMUSP00000096347   ⟸   ENSMUST00000098751
Ensembl Acc Id: ENSMUSP00000096346   ⟸   ENSMUST00000098750
RefSeq Acc Id: XP_036019027   ⟸   XM_036163134
- Peptide Label: isoform X1
- UniProtKB: Q8CDD9 (UniProtKB/Swiss-Prot),   Q149J0 (UniProtKB/Swiss-Prot),   Q8C893 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036019028   ⟸   XM_036163135
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019029   ⟸   XM_036163136
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CDD9-F1-model_v2 AlphaFold Q8CDD9 1-755 view protein structure

Promoters
RGD ID:6833211
Promoter ID:MM_KWN:35692
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:NM_001039478,   OTTMUST00000081504
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363106,487,664 - 106,488,164 (+)MPROMDB
RGD ID:6833214
Promoter ID:MM_KWN:35693
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000029505,   NM_001039488,   OTTMUST00000081498,   OTTMUST00000081499,   OTTMUST00000081501,   OTTMUST00000081505,   OTTMUST00000081506,   OTTMUST00000081507,   UC008QWI.1,   UC008QWJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363106,524,306 - 106,525,037 (+)MPROMDB
RGD ID:6881992
Promoter ID:EPDNEW_M4442
Type:initiation region
Name:Lrif1_1
Description:Mus musculus ligand dependent nuclear receptor interacting factor1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4443  EPDNEW_M4444  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,684,968 - 106,685,028EPDNEW
RGD ID:6881984
Promoter ID:EPDNEW_M4443
Type:initiation region
Name:Lrif1_3
Description:Mus musculus ligand dependent nuclear receptor interacting factor1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4444  EPDNEW_M4442  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,721,682 - 106,721,742EPDNEW
RGD ID:6881986
Promoter ID:EPDNEW_M4444
Type:initiation region
Name:Lrif1_2
Description:Mus musculus ligand dependent nuclear receptor interacting factor1 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M4443  EPDNEW_M4442  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383106,721,926 - 106,721,986EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445214 AgrOrtholog
Ensembl Genes ENSMUSG00000056260 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098750 ENTREZGENE
  ENSMUST00000098750.5 UniProtKB/Swiss-Prot
  ENSMUST00000098751 ENTREZGENE
  ENSMUST00000098751.10 UniProtKB/TrEMBL
  ENSMUST00000106736 ENTREZGENE
  ENSMUST00000106736.3 UniProtKB/TrEMBL
  ENSMUST00000127003.8 UniProtKB/Swiss-Prot
  ENSMUST00000130105.2 UniProtKB/TrEMBL
  ENSMUST00000150513.2 UniProtKB/TrEMBL
  ENSMUST00000154973.2 UniProtKB/TrEMBL
InterPro LRIF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:321000 UniProtKB/Swiss-Prot
MGD MGI:2445214 ENTREZGENE
NCBI Gene 321000 ENTREZGENE
PANTHER LIGAND-DEPENDENT NUCLEAR RECEPTOR-INTERACTING FACTOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16131 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LRIF1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lrif1 PhenoGen
UniProt D3YWW6_MOUSE UniProtKB/TrEMBL
  D3Z005_MOUSE UniProtKB/TrEMBL
  D3Z1H3_MOUSE UniProtKB/TrEMBL
  G3X9P5 ENTREZGENE, UniProtKB/TrEMBL
  G5E8M8 ENTREZGENE, UniProtKB/TrEMBL
  LRIF1_MOUSE UniProtKB/Swiss-Prot
  Q149J0 ENTREZGENE
  Q149J1_MOUSE UniProtKB/TrEMBL
  Q505B0_MOUSE UniProtKB/TrEMBL
  Q8C893 ENTREZGENE
  Q8CDD9 ENTREZGENE
UniProt Secondary Q149J0 UniProtKB/Swiss-Prot
  Q8C893 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-25 Lrif1  ligand dependent nuclear receptor interacting factor 1  4933421E11Rik  RIKEN cDNA 4933421E11 gene  Symbol and/or name change 5135510 APPROVED