Ube3a (ubiquitin protein ligase E3A) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Ube3a (ubiquitin protein ligase E3A) Mus musculus
Analyze
Symbol: Ube3a
Name: ubiquitin protein ligase E3A
RGD ID: 1314935
MGI Page MGI
Description: Enables transcription coactivator activity and ubiquitin protein ligase activity. Involved in several processes, including negative regulation of TORC1 signaling; positive regulation of Golgi lumen acidification; and proteasome-mediated ubiquitin-dependent protein catabolic process. Acts upstream of or within several processes, including androgen receptor signaling pathway; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and reproductive structure development. Located in cytosol and nucleus. Is active in glutamatergic synapse; postsynaptic cytosol; and synaptic vesicle. Is expressed in several structures, including central nervous system; radius; and retina. Used to study Angelman syndrome. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732496B02; 5830462N02Rik; A130086L21Rik; E6-AP ubiquitin protein ligase; HECT-type ubiquitin transferase E3A; Hpv; Hpve6a; KIAA4216; mKIAA4216; oncogenic protein-associated protein E6-AP; ubiquitin conjugating enzyme E3A; ubiquitin-protein ligase E3A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39758,871,891 - 58,960,585 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl758,878,498 - 58,961,284 (+)EnsemblGRCm39 Ensembl
GRCm38759,228,750 - 59,310,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,228,750 - 59,311,536 (+)EnsemblGRCm38mm10GRCm38
MGSCv37766,484,120 - 66,562,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36748,955,227 - 49,033,145 (+)NCBIMGSCv36mm8
MGSCv36759,096,619 - 59,174,596 (+)NCBIMGSCv36mm8
Cytogenetic Map7B5NCBI
cM Map733.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aconitine  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
amphetamine  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium sulfate  (EXP)
calycosin  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chlordecone  (EXP)
chloroprene  (ISO)
cisplatin  (EXP)
cobalt dichloride  (EXP,ISO)
cocaine  (ISO)
cyproterone acetate  (ISO)
diarsenic trioxide  (EXP,ISO)
diazinon  (ISO)
Dibutyl phosphate  (ISO)
doxorubicin  (EXP,ISO)
fenofibrate  (EXP)
finasteride  (ISO)
flutamide  (ISO)
folic acid  (ISO)
gentamycin  (ISO)
hydrogen cyanide  (EXP)
ivermectin  (ISO)
Mecamylamine  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
methoxychlor  (ISO)
nefazodone  (ISO)
nicotine  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium cyanide  (EXP)
resveratrol  (ISO)
sodium arsenite  (ISO)
sulindac  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
troglitazone  (EXP)
tubocurarine  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adrenaline level  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal cerebral cortex morphology  (IAGP)
abnormal contextual conditioning behavior  (IAGP)
abnormal dendrite morphology  (IAGP)
abnormal depression-related behavior  (IAGP)
abnormal emotion/affect behavior  (IAGP)
abnormal GABA-mediated receptor currents  (IAGP)
abnormal gait  (IAGP)
abnormal learning/memory/conditioning  (IAGP)
abnormal long-term potentiation  (IAGP)
abnormal mammary gland growth during pregnancy  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor learning  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nest building behavior  (IAGP)
abnormal operant conditioning behavior  (IAGP)
abnormal ovarian folliculogenesis  (IAGP)
abnormal posture  (IAGP)
abnormal seminal vesicle morphology  (IEA)
abnormal sleep pattern  (IAGP)
abnormal spatial learning  (IAGP)
abnormal spike wave discharge  (IAGP)
absence seizures  (IAGP)
audiogenic seizures  (IAGP)
bradykinesia  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral content  (IEA)
decreased bone mineral density  (IEA)
decreased brain weight  (IAGP)
decreased exploration in new environment  (IEA)
decreased food intake  (IEA)
decreased litter size  (IAGP)
decreased locomotor activity  (IAGP)
decreased oocyte number  (IAGP)
decreased ovary weight  (IAGP)
decreased prostate gland weight  (IAGP)
decreased respiratory quotient  (IEA)
decreased social investigation  (IAGP)
decreased testis weight  (IAGP)
decreased thigmotaxis  (IAGP)
decreased uterus weight  (IAGP)
decreased vertical activity  (IEA)
hyperactivity  (IEA)
impaired contextual conditioning behavior  (IAGP)
impaired coordination  (IAGP)
impaired luteinization  (IAGP)
impaired sperm capacitation  (IAGP)
increased body weight  (IAGP)
increased dopamine level  (IAGP)
increased hematocrit  (IEA)
increased locomotor activity  (IAGP)
increased serotonin level  (IAGP)
increased total body fat amount  (IEA)
increased vertical activity  (IAGP)
limb grasping  (IAGP)
oligozoospermia  (IAGP)
paternal imprinting  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
reduced female fertility  (IAGP)
reduced long-term potentiation  (IAGP)
reduced male fertility  (IAGP)
small cerebellum  (IAGP)
tonic-clonic seizures  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Translational outcomes in a full gene deletion of ubiquitin protein ligase E3A rat model of Angelman syndrome. Berg EL, etal., Transl Psychiatry. 2020 Jan 27;10(1):39. doi: 10.1038/s41398-020-0720-2.
2. Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade. Huang L, etal., Science 1999 Nov 12;286(5443):1321-6.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. UBE3A/E6-AP mutations cause Angelman syndrome. Kishino T, etal., Nat Genet 1997 Jan;15(1):70-3.
5. Towards a therapy for Angelman syndrome by targeting a long non-coding RNA. Meng L, etal., Nature. 2015 Feb 19;518(7539):409-12. doi: 10.1038/nature13975. Epub 2014 Dec 1.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Ube3a reinstatement identifies distinct developmental windows in a murine Angelman syndrome model. Silva-Santos S, etal., J Clin Invest. 2015 May;125(5):2069-76. doi: 10.1172/JCI80554. Epub 2015 Apr 13.
14. Low-dose thyroxine attenuates autism-associated adverse effects of fetal alcohol in male offspring's social behavior and hippocampal gene expression. Tunc-Ozcan E, etal., Alcohol Clin Exp Res. 2013 Nov;37(11):1986-95. doi: 10.1111/acer.12183. Epub 2013 Jun 13.
Additional References at PubMed
PMID:7708685   PMID:8601494   PMID:8889548   PMID:9060416   PMID:9110176   PMID:9182527   PMID:9195990   PMID:9288101   PMID:9613204   PMID:9808466   PMID:10349636   PMID:10400982  
PMID:10624951   PMID:10767319   PMID:10922068   PMID:11042159   PMID:11074018   PMID:11076861   PMID:11350123   PMID:11668390   PMID:11707329   PMID:11756548   PMID:11895368   PMID:12477932  
PMID:12520002   PMID:12627233   PMID:12668607   PMID:12828934   PMID:14610273   PMID:15163367   PMID:15226413   PMID:15263005   PMID:15590147   PMID:15615769   PMID:15620220   PMID:15655249  
PMID:15782199   PMID:15921919   PMID:16027444   PMID:16141072   PMID:16141073   PMID:16254014   PMID:16602821   PMID:16754645   PMID:16905559   PMID:17085449   PMID:17130828   PMID:17259980  
PMID:17901046   PMID:17936729   PMID:17940072   PMID:18166085   PMID:18201976   PMID:18329113   PMID:18413322   PMID:18799693   PMID:19325566   PMID:19430469   PMID:19563863   PMID:19591933  
PMID:19782683   PMID:20211139   PMID:20212164   PMID:20351251   PMID:20423730   PMID:20530688   PMID:20571502   PMID:20696245   PMID:20808828   PMID:20826237   PMID:21029865   PMID:21233130  
PMID:21493713   PMID:21677750   PMID:21733131   PMID:21873635   PMID:21927031   PMID:21974935   PMID:22131424   PMID:22156770   PMID:22174738   PMID:22190039   PMID:22215440   PMID:22381732  
PMID:22493002   PMID:22560727   PMID:22681684   PMID:22689861   PMID:22778257   PMID:22787151   PMID:22916201   PMID:22986523   PMID:23040663   PMID:23139813   PMID:23143301   PMID:23220633  
PMID:23283345   PMID:23295389   PMID:23424281   PMID:23447592   PMID:23762344   PMID:23791832   PMID:23819640   PMID:23911285   PMID:24125951   PMID:24155239   PMID:24254964   PMID:24295341  
PMID:24385930   PMID:24434871   PMID:24672001   PMID:24678582   PMID:24706802   PMID:24728990   PMID:24952961   PMID:25027318   PMID:25300248   PMID:25491305   PMID:25660546   PMID:25684537  
PMID:25815718   PMID:25848016   PMID:25864922   PMID:25894543   PMID:26028516   PMID:26166566   PMID:26231800   PMID:26446213   PMID:26485287   PMID:26658871   PMID:26845073   PMID:26869263  
PMID:27021170   PMID:27122043   PMID:27306933   PMID:27325702   PMID:27339004   PMID:27546058   PMID:27581300   PMID:27979975   PMID:28007908   PMID:28009282   PMID:28074012   PMID:28190767  
PMID:28297715   PMID:28378742   PMID:28411125   PMID:28468997   PMID:28515788   PMID:28576709   PMID:28592637   PMID:28663201   PMID:28671696   PMID:28804447   PMID:28814801   PMID:28931574  
PMID:29016856   PMID:29016862   PMID:29054411   PMID:29097328   PMID:29175955   PMID:29202468   PMID:29217762   PMID:29354033   PMID:29388081   PMID:29431654   PMID:29782878   PMID:30020076  
PMID:30082419   PMID:30352049   PMID:30457570   PMID:30690483   PMID:30814928   PMID:30937395   PMID:31143434   PMID:31160454   PMID:31235931   PMID:31445164   PMID:31503547   PMID:31730795  
PMID:31798818   PMID:31849603   PMID:32087286   PMID:32325033   PMID:32532103   PMID:32555345   PMID:32833011   PMID:32877400   PMID:32879944   PMID:32937128   PMID:32948244   PMID:33049319  
PMID:33087932   PMID:33212289   PMID:33411694   PMID:33420192   PMID:33464534   PMID:33542309   PMID:33549123   PMID:33737669   PMID:33856035   PMID:34321999   PMID:34369389   PMID:34512263  
PMID:34526125   PMID:34676830   PMID:34985196   PMID:35065713   PMID:35288451   PMID:35401134   PMID:36114006   PMID:36134658   PMID:36139390   PMID:36212189   PMID:36237484   PMID:36417873  
PMID:36594817   PMID:36613751   PMID:36764852   PMID:36805082   PMID:36810252   PMID:36849003   PMID:36859399   PMID:36920305   PMID:37069177   PMID:37389991   PMID:37392820   PMID:37454373  
PMID:37474493   PMID:37903805   PMID:37994169   PMID:38101713   PMID:38316900   PMID:38355793   PMID:38508482   PMID:38977672  


Genomics

Comparative Map Data
Ube3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39758,871,891 - 58,960,585 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl758,878,498 - 58,961,284 (+)EnsemblGRCm39 Ensembl
GRCm38759,228,750 - 59,310,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl759,228,750 - 59,311,536 (+)EnsemblGRCm38mm10GRCm38
MGSCv37766,484,120 - 66,562,097 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36748,955,227 - 49,033,145 (+)NCBIMGSCv36mm8
MGSCv36759,096,619 - 59,174,596 (+)NCBIMGSCv36mm8
Cytogenetic Map7B5NCBI
cM Map733.95NCBI
UBE3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381525,333,728 - 25,439,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1525,333,728 - 25,439,051 (-)EnsemblGRCh38hg38GRCh38
GRCh371525,578,875 - 25,684,203 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361523,133,489 - 23,235,221 (-)NCBINCBI36Build 36hg18NCBI36
Build 341523,133,488 - 23,235,221NCBI
Celera153,744,415 - 3,845,932 (-)NCBICelera
Cytogenetic Map15q11.2NCBI
HuRef153,706,895 - 3,808,683 (-)NCBIHuRef
CHM1_11525,531,939 - 25,633,637 (-)NCBICHM1_1
T2T-CHM13v2.01523,070,379 - 23,175,682 (-)NCBIT2T-CHM13v2.0
Ube3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81119,204,244 - 119,297,097 (+)NCBIGRCr8
mRatBN7.21110,070,260 - 110,161,675 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1110,070,480 - 110,157,250 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1115,450,417 - 115,541,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01123,923,035 - 124,013,927 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01117,171,279 - 117,262,170 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01116,586,901 - 116,678,161 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1116,587,815 - 116,679,973 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01117,745,283 - 117,834,011 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41110,729,142 - 110,816,491 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11110,807,819 - 110,893,065 (+)NCBI
Celera1104,203,680 - 104,290,036 (+)NCBICelera
Cytogenetic Map1q22NCBI
Ube3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555333,733,148 - 3,821,577 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555333,733,148 - 3,828,353 (+)NCBIChiLan1.0ChiLan1.0
UBE3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2169,868,709 - 9,970,172 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11513,508,880 - 13,610,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0154,494,029 - 4,595,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11522,747,069 - 22,848,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1522,747,075 - 22,825,459 (-)Ensemblpanpan1.1panPan2
UBE3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,347,034 - 35,442,329 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,347,064 - 35,440,256 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha338,007,643 - 38,103,375 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0335,708,135 - 35,803,900 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,708,068 - 35,801,844 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,230,926 - 35,326,630 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,500,117 - 35,595,835 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,647,966 - 35,743,745 (+)NCBIUU_Cfam_GSD_1.0
Ube3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640123,339,609 - 123,442,282 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647141,187,612 - 41,283,517 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647141,187,665 - 41,290,345 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1141,887,227 - 141,995,003 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11141,887,179 - 142,001,595 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21157,783,503 - 157,881,397 (+)NCBISscrofa10.2Sscrofa10.2susScr3
UBE3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12656,638,936 - 56,738,555 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2656,666,162 - 56,736,737 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605439,545,194 - 39,648,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:416
Count of miRNA genes:295
Interacting mature miRNAs:316
Transcripts:ENSMUST00000107537
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1301465Egrm3_mearly growth rate (mouse)Not determined75732612191326352Mouse
1300952Hcs1_mhepatocarcinogenesis susceptibility 1 (mouse)Not determined75732612191326352Mouse
1301663Skull9_mskull morphology 9 (mouse)Not determined75732612191326352Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
11565101Tsve1_mvariable short tail (Tsv) enhancer 1 (mouse)75588950887142720Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74524974879249748Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
12880418V125Dq6_mvitamin D active form serum level QTL 6 (mouse)75214974886149748Mouse
10054064Bwq11_mbody weight QTL 11 (mouse)Not determined75112495485125093Mouse
11532741Tbrs5_mtuberculosis resistance 5 (mouse)74915922783235415Mouse
1357752Tabw_mtally ho asscoiated body weight (mouse)Not determined74919327883193390Mouse
10053685Eae43_mexperimental allergic encephalomyelitis susceptibility 43 (mouse)Not determined75112495485125093Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1302141Fcsa6_mfemoral cross-sectional area 6 (mouse)Not determined74838446182384607Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
12738423Lfibq6_mliver fibrosis QTL 6 (mouse)74769437866704862Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314302Vmm2_mvariable multisystem mineralization 2, heart (mouse)74714974874149748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse

Markers in Region
AU017677  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38759,232,968 - 59,233,105UniSTSGRCm38
MGSCv37766,488,338 - 66,488,475UniSTSGRCm37
Cytogenetic Map7CUniSTS
cM Map728.65UniSTS
Whitehead/MRC_RH7700.42UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
G67875  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38759,288,510 - 59,288,763UniSTSGRCm38
MGSCv37766,543,880 - 66,544,133UniSTSGRCm37
Cytogenetic Map7CUniSTS
Cytogenetic Map7B5UniSTS
cM Map728.65UniSTS
Ube3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38759,286,095 - 59,287,019UniSTSGRCm38
MGSCv37766,541,465 - 66,542,389UniSTSGRCm37
Cytogenetic Map7CUniSTS
Cytogenetic Map7B5UniSTS
cM Map728.65UniSTS
Ube3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38759,303,668 - 59,304,932UniSTSGRCm38
MGSCv37766,559,038 - 66,560,302UniSTSGRCm37
Cytogenetic Map7B5UniSTS
Cytogenetic Map7CUniSTS
cM Map728.65UniSTS
Ube3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map728.65UniSTS
Ube3a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7CUniSTS
cM Map728.65UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001033962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC167971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY301312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD352481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ125878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU234010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U82122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U96636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000107537   ⟹   ENSMUSP00000103161
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,499 - 58,956,475 (+)Ensembl
GRCm38.p6 Ensembl759,228,751 - 59,306,727 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200709   ⟹   ENSMUSP00000144148
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,892,656 - 58,921,751 (+)Ensembl
GRCm38.p6 Ensembl759,242,908 - 59,272,003 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200758   ⟹   ENSMUSP00000143859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,550 - 58,961,284 (+)Ensembl
GRCm38.p6 Ensembl759,228,802 - 59,311,536 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200781
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,925 - 58,925,836 (+)Ensembl
GRCm38.p6 Ensembl759,229,177 - 59,276,088 (+)Ensembl
Ensembl Acc Id: ENSMUST00000200949
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,926,683 - 58,930,936 (+)Ensembl
GRCm38.p6 Ensembl759,276,935 - 59,281,188 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,949,790 - 58,956,477 (+)Ensembl
GRCm38.p6 Ensembl759,300,042 - 59,306,729 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201409   ⟹   ENSMUSP00000144220
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,879,031 - 58,926,099 (+)Ensembl
GRCm38.p6 Ensembl759,229,283 - 59,276,351 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,973 - 58,897,289 (+)Ensembl
GRCm38.p6 Ensembl759,229,225 - 59,247,541 (+)Ensembl
Ensembl Acc Id: ENSMUST00000201794   ⟹   ENSMUSP00000144453
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,550 - 58,896,946 (+)Ensembl
GRCm38.p6 Ensembl759,228,802 - 59,247,198 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,570 - 58,937,210 (+)Ensembl
GRCm38.p6 Ensembl759,228,822 - 59,287,462 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202247   ⟹   ENSMUSP00000144398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,935,926 - 58,954,680 (+)Ensembl
GRCm38.p6 Ensembl759,286,178 - 59,304,932 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202288   ⟹   ENSMUSP00000144645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,936,690 - 58,954,690 (+)Ensembl
GRCm38.p6 Ensembl759,286,942 - 59,304,942 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202440   ⟹   ENSMUSP00000143896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,550 - 58,921,841 (+)Ensembl
GRCm38.p6 Ensembl759,228,802 - 59,272,093 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,953,259 - 58,954,692 (+)Ensembl
GRCm38.p6 Ensembl759,303,511 - 59,304,944 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,932,163 - 58,935,510 (+)Ensembl
GRCm38.p6 Ensembl759,282,415 - 59,285,762 (+)Ensembl
Ensembl Acc Id: ENSMUST00000202945   ⟹   ENSMUSP00000143962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,878,498 - 58,939,567 (+)Ensembl
GRCm38.p6 Ensembl759,228,750 - 59,289,819 (+)Ensembl
Ensembl Acc Id: ENSMUST00000207686   ⟹   ENSMUSP00000146524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,879,181 - 58,925,540 (+)Ensembl
GRCm38.p6 Ensembl759,229,433 - 59,275,792 (+)Ensembl
Ensembl Acc Id: ENSMUST00000208313   ⟹   ENSMUSP00000146673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl758,879,184 - 58,921,865 (+)Ensembl
GRCm38.p6 Ensembl759,229,436 - 59,272,117 (+)Ensembl
RefSeq Acc Id: NM_001033962   ⟹   NP_001029134
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,498 - 58,960,585 (+)NCBI
GRCm38759,228,750 - 59,310,837 (+)NCBI
MGSCv37766,484,120 - 66,562,097 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001393666   ⟹   NP_001380595
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393668   ⟹   NP_001380597
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393669   ⟹   NP_001380598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393670   ⟹   NP_001380599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393671   ⟹   NP_001380600
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,879,175 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393672   ⟹   NP_001380601
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_001393973   ⟹   NP_001380902
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,879,175 - 58,960,585 (+)NCBI
RefSeq Acc Id: NM_011668   ⟹   NP_035798
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,498 - 58,960,585 (+)NCBI
GRCm38759,228,750 - 59,310,837 (+)NCBI
MGSCv37766,484,120 - 66,562,097 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_173010   ⟹   NP_766598
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,939,567 (+)NCBI
RefSeq Acc Id: XM_030242372   ⟹   XP_030098232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,879,027 - 58,956,481 (+)NCBI
GRCm38759,229,739 - 59,306,733 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242373   ⟹   XP_030098233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,550 - 58,956,481 (+)NCBI
GRCm38759,228,802 - 59,306,733 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242374   ⟹   XP_030098234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,871,891 - 58,956,481 (+)NCBI
GRCm38759,228,804 - 59,306,733 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242375   ⟹   XP_030098235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39758,878,512 - 58,956,481 (+)NCBI
GRCm38759,228,764 - 59,306,733 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001029134 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380595 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380597 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380598 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380599 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380600 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380601 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380902 (Get FASTA)   NCBI Sequence Viewer  
  NP_035798 (Get FASTA)   NCBI Sequence Viewer  
  NP_766598 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098232 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098233 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098234 (Get FASTA)   NCBI Sequence Viewer  
  XP_030098235 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB47756 (Get FASTA)   NCBI Sequence Viewer  
  AAB63361 (Get FASTA)   NCBI Sequence Viewer  
  AAI31659 (Get FASTA)   NCBI Sequence Viewer  
  AAI31660 (Get FASTA)   NCBI Sequence Viewer  
  ACD47038 (Get FASTA)   NCBI Sequence Viewer  
  BAC26314 (Get FASTA)   NCBI Sequence Viewer  
  BAC38028 (Get FASTA)   NCBI Sequence Viewer  
  BAD90321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000103161
  ENSMUSP00000103161.3
  ENSMUSP00000143859
  ENSMUSP00000143859.2
  ENSMUSP00000143896.2
  ENSMUSP00000143962
  ENSMUSP00000143962.2
  ENSMUSP00000144148.2
  ENSMUSP00000144220.2
  ENSMUSP00000144398.2
  ENSMUSP00000144453.2
  ENSMUSP00000144645.2
  ENSMUSP00000146524.2
  ENSMUSP00000146673.2
GenBank Protein O08759 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035798   ⟸   NM_011668
- Peptide Label: isoform 2
- UniProtKB: P97482 (UniProtKB/Swiss-Prot),   E9QKT1 (UniProtKB/Swiss-Prot),   Q8CE29 (UniProtKB/Swiss-Prot),   O08759 (UniProtKB/Swiss-Prot),   Q5DTH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001029134   ⟸   NM_001033962
- Peptide Label: isoform 3
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030098235   ⟸   XM_030242375
- Peptide Label: isoform X4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098233   ⟸   XM_030242373
- Peptide Label: isoform X4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098234   ⟸   XM_030242374
- Peptide Label: isoform X4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030098232   ⟸   XM_030242372
- Peptide Label: isoform X3
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000143896   ⟸   ENSMUST00000202440
Ensembl Acc Id: ENSMUSP00000144645   ⟸   ENSMUST00000202288
Ensembl Acc Id: ENSMUSP00000144398   ⟸   ENSMUST00000202247
Ensembl Acc Id: ENSMUSP00000143962   ⟸   ENSMUST00000202945
Ensembl Acc Id: ENSMUSP00000103161   ⟸   ENSMUST00000107537
Ensembl Acc Id: ENSMUSP00000146673   ⟸   ENSMUST00000208313
Ensembl Acc Id: ENSMUSP00000146524   ⟸   ENSMUST00000207686
Ensembl Acc Id: ENSMUSP00000144220   ⟸   ENSMUST00000201409
Ensembl Acc Id: ENSMUSP00000144453   ⟸   ENSMUST00000201794
Ensembl Acc Id: ENSMUSP00000143859   ⟸   ENSMUST00000200758
Ensembl Acc Id: ENSMUSP00000144148   ⟸   ENSMUST00000200709
RefSeq Acc Id: NP_001380598   ⟸   NM_001393669
- Peptide Label: isoform 4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380597   ⟸   NM_001393668
- Peptide Label: isoform 3
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380599   ⟸   NM_001393670
- Peptide Label: isoform 4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380595   ⟸   NM_001393666
- Peptide Label: isoform 2
- UniProtKB: P97482 (UniProtKB/Swiss-Prot),   O08759 (UniProtKB/Swiss-Prot),   E9QKT1 (UniProtKB/Swiss-Prot),   Q8CE29 (UniProtKB/Swiss-Prot),   Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380601   ⟸   NM_001393672
- Peptide Label: isoform 4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_766598   ⟸   NM_173010
- Peptide Label: isoform 1
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001380902   ⟸   NM_001393973
- Peptide Label: isoform 2
- UniProtKB: P97482 (UniProtKB/Swiss-Prot),   O08759 (UniProtKB/Swiss-Prot),   E9QKT1 (UniProtKB/Swiss-Prot),   Q8CE29 (UniProtKB/Swiss-Prot),   Q5DTH1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001380600   ⟸   NM_001393671
- Peptide Label: isoform 4
- UniProtKB: Q5DTH1 (UniProtKB/TrEMBL)
Protein Domains
HECT   Ubiquitin-protein ligase E3A N-terminal zinc-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O08759-F1-model_v2 AlphaFold O08759 1-870 view protein structure

Promoters
RGD ID:8664275
Promoter ID:EPDNEW_M10169
Type:initiation region
Name:Ube3a_1
Description:Mus musculus ubiquitin protein ligase E3A , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38759,228,811 - 59,228,871EPDNEW
RGD ID:6841565
Promoter ID:MM_KWN:50678
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_173010,   UC009HEG.1,   UC009HEI.1,   UC009HEJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36766,483,711 - 66,484,292 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105098 AgrOrtholog
Ensembl Genes ENSMUSG00000025326 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107537 ENTREZGENE
  ENSMUST00000107537.5 UniProtKB/Swiss-Prot
  ENSMUST00000200709.2 UniProtKB/TrEMBL
  ENSMUST00000200758 ENTREZGENE
  ENSMUST00000200758.4 UniProtKB/Swiss-Prot
  ENSMUST00000201409.4 UniProtKB/TrEMBL
  ENSMUST00000201794.4 UniProtKB/TrEMBL
  ENSMUST00000202247.4 UniProtKB/TrEMBL
  ENSMUST00000202288.2 UniProtKB/TrEMBL
  ENSMUST00000202440.4 UniProtKB/TrEMBL
  ENSMUST00000202945 ENTREZGENE
  ENSMUST00000202945.4 UniProtKB/Swiss-Prot
  ENSMUST00000207686.2 UniProtKB/TrEMBL
  ENSMUST00000208313.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.130.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/Swiss-Prot
  Hect, E3 ligase catalytic domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AZUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AZUL_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E3_ubiq-protein_ligase UniProtKB/TrEMBL
  E3A/B/C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HECT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect_E3_ubiquitin_ligase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBE3A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22215 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:105098 ENTREZGENE
NCBI Gene 22215 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE HUWE1 UniProtKB/TrEMBL
  HECT DOMAIN UBIQUITIN-PROTEIN LIGASE UniProtKB/TrEMBL
  UBIQUITIN-PROTEIN LIGASE E3C UniProtKB/Swiss-Prot
  UBIQUITIN-PROTEIN LIGASE E3C UniProtKB/Swiss-Prot
  UBIQUITIN-PROTEIN LIGASE E3C UniProtKB/TrEMBL
  UBIQUITIN-PROTEIN LIGASE E3C UniProtKB/TrEMBL
Pfam AZUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ube3a PhenoGen
PIRSF Ubiquitin-protein_ligase_E6-AP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HECTc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56204 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YTX6_MOUSE UniProtKB/TrEMBL
  A0A0J9YUF2_MOUSE UniProtKB/TrEMBL
  A0A0J9YUK0_MOUSE UniProtKB/TrEMBL
  A0A0J9YUY4_MOUSE UniProtKB/TrEMBL
  A0A0J9YV26_MOUSE UniProtKB/TrEMBL
  A0A0J9YVG1_MOUSE UniProtKB/TrEMBL
  A0A140LHS2_MOUSE UniProtKB/TrEMBL
  A0A140LI50_MOUSE UniProtKB/TrEMBL
  C6EQH4_MOUSE UniProtKB/TrEMBL
  E9QKT1 ENTREZGENE
  O08759 ENTREZGENE
  P97482 ENTREZGENE
  Q3TPQ9_MOUSE UniProtKB/TrEMBL
  Q5DTH1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BNS1_MOUSE UniProtKB/TrEMBL
  Q8CE29 ENTREZGENE
  UBE3A_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9QKT1 UniProtKB/Swiss-Prot
  P97482 UniProtKB/Swiss-Prot
  Q8CE29 UniProtKB/Swiss-Prot