Btbd7 (BTB domain containing 7) - Rat Genome Database

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Gene: Btbd7 (BTB domain containing 7) Mus musculus
Analyze
Symbol: Btbd7
Name: BTB domain containing 7
RGD ID: 1314781
MGI Page MGI
Description: Acts upstream of or within regulation of branching involved in salivary gland morphogenesis. Located in nucleus. Is expressed in several structures, including central nervous system; early conceptus; genitourinary system; and submandibular gland primordium. Orthologous to human BTBD7 (BTB domain containing 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730507E09Rik; 8030448M07; BTB (POZ) domain containing 7; BTB/POZ domain-containing protein 7; E130118E17Rik; function-unkown protein 1; FUP; FUP1; MGC49574; mKIAA1525; RIKEN cDNA 5730507E09 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912102,747,056 - 102,844,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12102,747,056 - 102,844,730 (-)EnsemblGRCm39 Ensembl
GRCm3812102,780,797 - 102,878,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12102,780,797 - 102,878,471 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,022,858 - 104,116,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,185,698 - 103,279,456 (-)NCBIMGSCv36mm8
Celera12104,002,002 - 104,058,498 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11527404   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:20412781   PMID:20671187   PMID:21677750   PMID:21873635   PMID:27369076   PMID:34323105   PMID:38355793  


Genomics

Comparative Map Data
Btbd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912102,747,056 - 102,844,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12102,747,056 - 102,844,730 (-)EnsemblGRCm39 Ensembl
GRCm3812102,780,797 - 102,878,471 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12102,780,797 - 102,878,471 (-)EnsemblGRCm38mm10GRCm38
MGSCv3712104,022,858 - 104,116,616 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612103,185,698 - 103,279,456 (-)NCBIMGSCv36mm8
Celera12104,002,002 - 104,058,498 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1252.25NCBI
BTBD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381493,237,550 - 93,333,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1493,237,550 - 93,333,092 (-)EnsemblGRCh38hg38GRCh38
GRCh371493,703,896 - 93,799,382 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361492,773,649 - 92,869,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 341492,823,726 - 92,869,138NCBI
Celera1473,757,920 - 73,853,399 (-)NCBICelera
Cytogenetic Map14q32.12NCBI
HuRef1473,884,190 - 73,979,391 (-)NCBIHuRef
CHM1_11493,641,911 - 93,737,412 (-)NCBICHM1_1
T2T-CHM13v2.01487,469,459 - 87,564,916 (-)NCBIT2T-CHM13v2.0
Btbd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86127,685,185 - 127,774,947 (-)NCBIGRCr8
mRatBN7.26121,920,365 - 122,010,114 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6121,923,023 - 121,972,405 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6122,062,006 - 122,110,800 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06122,357,262 - 122,406,061 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06121,693,292 - 121,742,006 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06126,658,398 - 126,748,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6126,661,634 - 126,710,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06135,864,426 - 135,954,399 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46127,056,657 - 127,105,458 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16127,060,831 - 127,109,204 (-)NCBI
Celera6119,410,556 - 119,459,277 (-)NCBICelera
Cytogenetic Map6q32NCBI
Btbd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543815,351,688 - 15,445,704 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543815,345,678 - 15,445,705 (-)NCBIChiLan1.0ChiLan1.0
BTBD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21594,395,243 - 94,490,849 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11493,611,748 - 93,707,266 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01473,870,163 - 73,965,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11493,206,479 - 93,301,895 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1493,211,207 - 93,264,835 (-)Ensemblpanpan1.1panPan2
BTBD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1862,437,825 - 62,547,419 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl862,441,752 - 62,522,836 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha862,014,795 - 62,124,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0862,708,795 - 62,818,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl862,712,265 - 62,794,000 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1862,387,479 - 62,496,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0862,438,869 - 62,548,499 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0862,768,363 - 62,877,830 (-)NCBIUU_Cfam_GSD_1.0
Btbd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864012,200,112 - 12,309,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367331,153,955 - 1,266,934 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367331,157,143 - 1,217,111 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7114,617,508 - 114,707,095 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17114,617,489 - 114,707,056 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27121,202,700 - 121,292,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12470,979,273 - 71,084,485 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2470,979,232 - 71,041,628 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605358,230,859 - 58,335,941 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247349,665,086 - 9,714,685 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247349,659,249 - 9,768,359 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Btbd7
2394 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:116
Interacting mature miRNAs:117
Transcripts:ENSMUST00000045652
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
25394546Skmw76_mskeletal muscle weight 76, TA (mouse)12102593095106941888Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse

Markers in Region
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:236932  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812102,781,718 - 102,782,083UniSTSGRCm38
MGSCv3712104,019,928 - 104,020,293UniSTSGRCm37
Celera12103,999,072 - 103,999,437UniSTS
Cytogenetic Map12EUniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001377026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_165048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000045652   ⟹   ENSMUSP00000046951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,750,897 - 102,844,537 (-)Ensembl
GRCm38.p6 Ensembl12102,784,638 - 102,878,278 (-)Ensembl
Ensembl Acc Id: ENSMUST00000220596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,768,981 - 102,806,540 (-)Ensembl
GRCm38.p6 Ensembl12102,802,722 - 102,840,281 (-)Ensembl
Ensembl Acc Id: ENSMUST00000221376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,801,892 - 102,844,730 (-)Ensembl
GRCm38.p6 Ensembl12102,835,633 - 102,878,471 (-)Ensembl
Ensembl Acc Id: ENSMUST00000221914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,843,937 - 102,844,528 (-)Ensembl
GRCm38.p6 Ensembl12102,877,678 - 102,878,269 (-)Ensembl
Ensembl Acc Id: ENSMUST00000221925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,778,192 - 102,844,667 (-)Ensembl
GRCm38.p6 Ensembl12102,811,933 - 102,878,408 (-)Ensembl
Ensembl Acc Id: ENSMUST00000223554   ⟹   ENSMUSP00000152426
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12102,747,056 - 102,844,665 (-)Ensembl
GRCm38.p6 Ensembl12102,780,797 - 102,878,406 (-)Ensembl
RefSeq Acc Id: NM_001377026   ⟹   NP_001363955
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,747,056 - 102,844,701 (-)NCBI
GRCm3812102,780,797 - 102,878,442 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172806   ⟹   NP_766394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,747,056 - 102,844,701 (-)NCBI
GRCm3812102,780,797 - 102,878,442 (-)NCBI
MGSCv3712104,022,858 - 104,116,616 (-)RGD
Celera12104,002,002 - 104,058,498 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_165048
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,747,056 - 102,844,701 (-)NCBI
GRCm3812102,780,797 - 102,878,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157405   ⟹   XP_036013298
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,748,577 - 102,778,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157406   ⟹   XP_036013299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,788,297 - 102,844,730 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937501
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912102,750,902 - 102,844,733 (-)NCBI
Sequence:
RefSeq Acc Id: NP_766394   ⟸   NM_172806
- UniProtKB: Q8CFE5 (UniProtKB/Swiss-Prot),   Q80TC3 (UniProtKB/Swiss-Prot),   Q8BZY9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001363955   ⟸   NM_001377026
- UniProtKB: Q8CFE5 (UniProtKB/Swiss-Prot),   Q8BZY9 (UniProtKB/Swiss-Prot),   Q80TC3 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000152426   ⟸   ENSMUST00000223554
Ensembl Acc Id: ENSMUSP00000046951   ⟸   ENSMUST00000045652
RefSeq Acc Id: XP_036013298   ⟸   XM_036157405
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036013299   ⟸   XM_036157406
- Peptide Label: isoform X2
Protein Domains
BACK   BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CFE5-F1-model_v2 AlphaFold Q8CFE5 1-1130 view protein structure

Promoters
RGD ID:8679062
Promoter ID:EPDNEW_M17562
Type:multiple initiation site
Name:Btbd7_2
Description:Mus musculus BTB domain containing 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17563  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812102,867,518 - 102,867,578EPDNEW
RGD ID:8679064
Promoter ID:EPDNEW_M17563
Type:initiation region
Name:Btbd7_1
Description:Mus musculus BTB domain containing 7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M17562  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812102,878,442 - 102,878,502EPDNEW
RGD ID:6846953
Promoter ID:MM_ACW:11840
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:BTBD7.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612104,026,191 - 104,026,691 (-)MPROMDB
RGD ID:6822778
Promoter ID:MM_KWN:12543
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_172806,   UC007OUR.1,   UC007OUT.1,   UC007OUU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612104,116,466 - 104,116,966 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917858 AgrOrtholog
Ensembl Genes ENSMUSG00000041702 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000045652 ENTREZGENE
  ENSMUST00000045652.8 UniProtKB/Swiss-Prot
  ENSMUST00000223554 ENTREZGENE
  ENSMUST00000223554.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot
InterPro BACK UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot
  Btbd7 UniProtKB/Swiss-Prot
  BTBD7_BACK UniProtKB/Swiss-Prot
  BTBD7_BTB_POZ_first UniProtKB/Swiss-Prot
  BTBD7_BTB_POZ_second UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
KEGG Report mmu:238386 UniProtKB/Swiss-Prot
MGD MGI:1917858 ENTREZGENE
NCBI Gene Btbd7 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot
  PTHR16064 UniProtKB/Swiss-Prot
Pfam BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
PhenoGen Btbd7 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot
SMART BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
UniProt BTBD7_MOUSE UniProtKB/Swiss-Prot
  Q80TC3 ENTREZGENE
  Q8BZY9 ENTREZGENE
  Q8CFE5 ENTREZGENE
UniProt Secondary Q80TC3 UniProtKB/Swiss-Prot
  Q8BZY9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Btbd7  BTB domain containing 7  5730507E09Rik  RIKEN cDNA 5730507E09 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 5730507E09Rik  RIKEN cDNA 5730507E09 gene  Btbd7  BTB domain containing 7  Symbol and/or name change 5135510 APPROVED
2023-06-27 Btbd7  BTB domain containing 7  Btbd7  BTB (POZ) domain containing 7  Symbol and/or name change 5135510 APPROVED