Bmp5 (bone morphogenetic protein 5) - Rat Genome Database

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Gene: Bmp5 (bone morphogenetic protein 5) Mus musculus
Analyze
Symbol: Bmp5
Name: bone morphogenetic protein 5
RGD ID: 1314331
MGI Page MGI
Description: Predicted to enable BMP receptor binding activity and cytokine activity. Involved in several processes, including allantois development; chordate embryonic development; and heart development. Acts upstream of or within several processes, including anterior head development; ear development; and male genitalia development. Predicted to be located in vesicle. Predicted to be active in extracellular space. Is expressed in several structures, including bone; central nervous system; embryo mesenchyme; limb; and sensory organ. Used to study Meier-Gorlin syndrome. Orthologous to human BMP5 (bone morphogenetic protein 5).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AU023399; BMP-5; se; short ear
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39975,682,647 - 75,807,598 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl975,682,646 - 75,807,592 (+)EnsemblGRCm39 Ensembl
GRCm38975,775,365 - 75,900,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,775,364 - 75,900,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv37975,623,172 - 75,746,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36975,561,274 - 75,684,926 (+)NCBIMGSCv36mm8
Celera972,947,674 - 73,071,783 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
arotinoid acid  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (EXP)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
carnosic acid  (EXP)
CHIR 99021  (ISO)
chlorambucil  (EXP)
chlordecone  (EXP)
chloroprene  (EXP)
cortisol  (ISO)
coumestrol  (ISO)
cytarabine  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
genistein  (EXP)
glyphosate  (ISO)
indole-3-methanol  (ISO)
kojic acid  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-ethyl-N-nitrosourea  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
oxaliplatin  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium dichromate  (EXP)
progesterone  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
topotecan  (ISO)
trichostatin A  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular space  (IBA,IEA,ISO)
vesicle  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal aorta morphology  (IAGP)
abnormal artery morphology  (IAGP)
abnormal bone healing  (IAGP)
abnormal bone ossification  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal cranium size  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal ear morphology  (IEA)
abnormal ear shape  (IEA)
abnormal embryonic tissue morphology  (IAGP)
abnormal extraembryonic ectoderm morphology  (IAGP)
abnormal femur morphology  (IAGP)
abnormal fibula morphology  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal hyoid bone lesser horn morphology  (IAGP)
abnormal kidney morphology  (IAGP)
abnormal laryngeal cartilage morphology  (IAGP)
abnormal larynx morphology  (IAGP)
abnormal limb bone morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal nose morphology  (IEA)
abnormal outer ear cartilage morphology  (IEA)
abnormal outer ear morphology  (IEA)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal right renal artery morphology  (IAGP)
abnormal sacrum morphology  (IAGP)
abnormal sesamoid bone of gastrocnemius morphology  (IAGP)
abnormal skeleton morphology  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal sternum ossification  (IAGP)
abnormal thoracic vertebrae morphology  (IAGP)
abnormal tibia morphology  (IAGP)
abnormal umbilical artery morphology  (IAGP)
abnormal urogenital fold morphology  (IAGP)
abnormal vertebrae morphology  (IAGP)
abnormal vertebral spinous process morphology  (IAGP)
abnormal xiphoid process morphology  (IAGP)
absent mesoderm  (IAGP)
absent ulna  (IAGP)
absent xiphoid process  (IAGP)
circling  (IEA)
decreased areal bone mineral density  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral content  (IAGP)
decreased bone mineral density  (IEA)
decreased cranium height  (IEA)
decreased cranium length  (IAGP)
decreased diameter of humerus  (IAGP)
decreased diameter of long bones  (IAGP)
decreased embryo size  (IAGP)
decreased liver weight  (IAGP)
decreased rib number  (IAGP)
ectopic ovary  (IAGP)
embryonic lethality between somite formation and embryo turning, complete penetrance  (IAGP)
granulomatous inflammation  (IAGP)
hydronephrosis  (IAGP)
hydroureter  (IAGP)
impaired hearing  (IEA)
increased cranium width  (IAGP)
increased length of long bones  (IAGP)
increased trophoblast giant cell number  (IAGP)
large ureter  (IAGP)
long humerus  (IAGP)
long tibia  (IAGP)
lowered ear position  (IEA)
lung cyst  (IAGP)
male infertility  (IAGP)
postnatal growth retardation  (IAGP)
prenatal lethality  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality  (IEA)
short ears  (IAGP)
short femur  (IAGP)
short humerus  (IAGP)
short mandible  (IAGP)
short maxilla  (IEA)
short nasal bone  (IAGP)
short snout  (IAGP)
short tail  (IAGP)
short ulna  (IAGP)
small cranium  (IAGP)
small cricoid cartilage  (IAGP)
small ears  (IAGP)
small thyroid cartilage  (IAGP)
small xiphoid process  (IAGP)
split xiphoid process  (IAGP)
thick ears  (IEA)
umbilical hernia  (IAGP)
unilateral cryptorchism  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Ceruloplasmin gene defect associated with epilepsy in EL mice. Garey CE, etal., Nat Genet 1994 Apr;6(4):426-31.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:970345   PMID:1018005   PMID:1288897   PMID:1329656   PMID:1339316   PMID:1427904   PMID:1460021   PMID:1871601   PMID:2303033   PMID:2304907   PMID:3000867   PMID:4557539  
PMID:4693062   PMID:5021246   PMID:5556347   PMID:5647630   PMID:5692092   PMID:5911159   PMID:5962396   PMID:5980120   PMID:6241468   PMID:7490098   PMID:7493015   PMID:7605705  
PMID:7605753   PMID:7665913   PMID:7710253   PMID:7811286   PMID:7917832   PMID:7958439   PMID:8146910   PMID:8211130   PMID:8661058   PMID:8747920   PMID:8798681   PMID:8806002  
PMID:8808404   PMID:8815925   PMID:8930994   PMID:9012517   PMID:9056639   PMID:9071596   PMID:9107676   PMID:9187146   PMID:9189614   PMID:9226375   PMID:9415424   PMID:9475750  
PMID:9664685   PMID:9664686   PMID:9786991   PMID:10036975   PMID:10071913   PMID:10079236   PMID:10349636   PMID:10462412   PMID:10517996   PMID:10677507   PMID:10716617   PMID:10725249  
PMID:10749990   PMID:10976045   PMID:11020711   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11256068   PMID:12403705   PMID:12466851   PMID:12477932   PMID:12644183   PMID:12663500  
PMID:12666204   PMID:13563786   PMID:13877379   PMID:13901431   PMID:14594209   PMID:14633986   PMID:14660436   PMID:15071597   PMID:15226263   PMID:15342483   PMID:15843407   PMID:16059910  
PMID:16141072   PMID:16141073   PMID:16151852   PMID:16537572   PMID:16587226   PMID:16587426   PMID:16602821   PMID:16783635   PMID:17066377   PMID:17246548   PMID:17246610   PMID:17299133  
PMID:17693602   PMID:17748600   PMID:17942731   PMID:18186922   PMID:18287559   PMID:18331343   PMID:18380899   PMID:18391523   PMID:18406693   PMID:19096511   PMID:19299468   PMID:19463158  
PMID:19864314   PMID:20021689   PMID:20185815   PMID:20284341   PMID:20359476   PMID:20493948   PMID:20969841   PMID:21068310   PMID:21179110   PMID:21185281   PMID:21187450   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:22461901   PMID:22485132   PMID:22560297   PMID:22718343   PMID:23200275   PMID:23383321   PMID:23497137   PMID:23531410   PMID:23560082   PMID:23563729  
PMID:23678046   PMID:24067355   PMID:24539717   PMID:24550112   PMID:24666178   PMID:24859004   PMID:24952961   PMID:25080521   PMID:25886903   PMID:26234751   PMID:26450967   PMID:26685326  
PMID:26721501   PMID:27068110   PMID:28324064   PMID:28497879   PMID:28731788   PMID:29031500   PMID:29321139   PMID:30061196   PMID:30174115   PMID:30201295   PMID:30228991   PMID:30235284  
PMID:30352686   PMID:30642949   PMID:31269433   PMID:31311865   PMID:31566563   PMID:32634398   PMID:32894216   PMID:33363172   PMID:33744859   PMID:34321999   PMID:35765132   PMID:35765140  
PMID:36166492   PMID:36192835   PMID:36587524   PMID:36959163   PMID:37017267   PMID:37478395   PMID:37481139   PMID:37607547   PMID:38355793   PMID:38837873  


Genomics

Comparative Map Data
Bmp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39975,682,647 - 75,807,598 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl975,682,646 - 75,807,592 (+)EnsemblGRCm39 Ensembl
GRCm38975,775,365 - 75,900,316 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl975,775,364 - 75,900,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv37975,623,172 - 75,746,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36975,561,274 - 75,684,926 (+)NCBIMGSCv36mm8
Celera972,947,674 - 73,071,783 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map942.34NCBI
BMP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38655,753,653 - 55,875,590 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl655,753,653 - 55,875,590 (-)EnsemblGRCh38hg38GRCh38
GRCh37655,618,451 - 55,740,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36655,728,195 - 55,848,334 (-)NCBINCBI36Build 36hg18NCBI36
Build 34655,728,198 - 55,848,334NCBI
Celera657,281,444 - 57,401,579 (-)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef655,455,271 - 55,575,481 (-)NCBIHuRef
CHM1_1655,623,337 - 55,743,453 (-)NCBICHM1_1
T2T-CHM13v2.0655,593,278 - 55,715,204 (-)NCBIT2T-CHM13v2.0
Bmp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8885,397,629 - 85,520,374 (+)NCBIGRCr8
mRatBN7.2876,517,164 - 76,639,925 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl876,517,164 - 76,639,925 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx882,030,944 - 82,153,707 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0880,289,767 - 80,412,506 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0878,130,272 - 78,253,044 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0882,669,466 - 82,950,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl882,878,941 - 82,950,273 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0882,266,949 - 82,526,447 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4880,593,053 - 80,717,015 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1880,610,468 - 80,733,833 (+)NCBI
Celera876,306,530 - 76,429,126 (+)NCBICelera
Cytogenetic Map8q24NCBI
Bmp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955411450,674 - 558,650 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955411450,674 - 557,213 (+)NCBIChiLan1.0ChiLan1.0
BMP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2570,217,543 - 70,341,856 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1666,094,284 - 66,218,613 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0655,302,721 - 55,425,248 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1656,936,871 - 57,058,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl656,936,850 - 57,059,519 (-)Ensemblpanpan1.1panPan2
BMP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11223,089,429 - 23,202,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1223,089,459 - 23,202,348 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1222,980,188 - 23,092,541 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01223,587,541 - 23,700,170 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1223,587,187 - 23,699,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11223,083,296 - 23,195,652 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01223,187,441 - 23,299,694 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01223,319,382 - 23,432,016 (-)NCBIUU_Cfam_GSD_1.0
Bmp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494658,495,816 - 58,609,333 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364765,350,870 - 5,464,354 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364765,350,870 - 5,464,561 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BMP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl725,344,822 - 25,470,470 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1725,344,924 - 25,468,430 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,657,701 - 29,658,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2729,873,198 - 29,939,042 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BMP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11715,696,379 - 15,819,454 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1715,696,580 - 15,819,564 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605821,842,528 - 21,973,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bmp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248503,322,782 - 3,481,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248503,324,553 - 3,481,439 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bmp5
3878 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1628
Count of miRNA genes:625
Interacting mature miRNAs:782
Transcripts:ENSMUST00000012281, ENSMUST00000137213
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95936994693370128Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301914Ksc1_mkeratinocyte stem cell locus 1 (mouse)Not determined97540903779998332Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974250230108250378Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96926774798701707Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
4141676Neogq1_mneonatal growth QTL 1 (mouse)Not determined95780504786121973Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972859058106859205Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966089077100089175Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967006220101006220Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95936994693370128Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96504119195522808Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969121898103121973Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969428566103428698Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95902438793024534Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95936994693370128Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972859058106859205Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968779563102779705Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95902438793024534Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96214976796149881Mouse
1301290Smgd1_msubmucosal gland distribution 1 (mouse)Not determined96583105686577967Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968779563102779705Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse

Markers in Region
Bmp5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37975,623,951 - 75,624,140UniSTSGRCm37
Celera972,948,452 - 72,948,641UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
cM Map942.0UniSTS
26.MMHAP76FRA11.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38975,844,629 - 75,844,779UniSTSGRCm38
MGSCv37975,692,436 - 75,692,586UniSTSGRCm37
Celera973,017,471 - 73,017,621UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Whitehead_YAC9 UniSTS
UniSTS:236197  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38975,899,869 - 75,900,082UniSTSGRCm38
MGSCv37975,747,676 - 75,747,889UniSTSGRCm37
Celera973,072,637 - 73,072,850UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
AU023399  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38975,899,863 - 75,899,947UniSTSGRCm38
MGSCv37975,747,670 - 75,747,754UniSTSGRCm37
Celera973,072,631 - 73,072,715UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Whitehead/MRC_RH9748.96UniSTS
PMC56999P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38975,776,161 - 75,776,567UniSTSGRCm38
MGSCv37975,623,968 - 75,624,374UniSTSGRCm37
Celera972,948,469 - 72,948,869UniSTS
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS
Bmp5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38975,776,144 - 75,776,333UniSTSGRCm38
MGSCv37975,623,951 - 75,624,140UniSTSGRCm37
Celera972,948,452 - 72,948,641UniSTS
Cytogenetic Map9DUniSTS
Bmp5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9DUniSTS
cM Map942.0UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000012281   ⟹   ENSMUSP00000012281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl975,682,646 - 75,807,592 (+)Ensembl
GRCm38.p6 Ensembl975,775,364 - 75,900,310 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl975,735,304 - 75,750,882 (+)Ensembl
GRCm38.p6 Ensembl975,828,022 - 75,843,600 (+)Ensembl
RefSeq Acc Id: NM_007555   ⟹   NP_031581
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39975,682,647 - 75,807,598 (+)NCBI
GRCm38975,775,365 - 75,900,316 (+)NCBI
MGSCv37975,623,172 - 75,746,824 (+)RGD
Celera972,947,674 - 73,071,783 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031581   ⟸   NM_007555
- Peptide Label: preproprotein
- UniProtKB: Q496P8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000012281   ⟸   ENSMUST00000012281
Protein Domains
TGF-beta family profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49003-F1-model_v2 AlphaFold P49003 1-452 view protein structure

Promoters
RGD ID:6844251
Promoter ID:MM_KWN:58108
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000051064
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36975,623,186 - 75,624,087 (+)MPROMDB
RGD ID:8670220
Promoter ID:EPDNEW_M13140
Type:multiple initiation site
Name:Bmp5_1
Description:Mus musculus bone morphogenetic protein 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38975,775,368 - 75,775,428EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88181 AgrOrtholog
Ensembl Genes ENSMUSG00000032179 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000012281 ENTREZGENE
  ENSMUST00000012281.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.120.970 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-b_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-b_propeptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFb_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12160 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88181 ENTREZGENE
NCBI Gene 12160 ENTREZGENE
PANTHER BONE MORPHOGENETIC PROTEIN 5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11848 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGFb_propeptide UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bmp5 PhenoGen
PROSITE TGF_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART TGFB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EJ18_MOUSE UniProtKB/TrEMBL
  BMP5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UXE6_MOUSE UniProtKB/TrEMBL
  Q496P8 ENTREZGENE, UniProtKB/TrEMBL
  Q496P9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8CCE0 UniProtKB/Swiss-Prot