TCF7 (transcription factor 7) - Rat Genome Database

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Gene: TCF7 (transcription factor 7) Homo sapiens
Analyze
Symbol: TCF7
Name: transcription factor 7
RGD ID: 1314197
HGNC Page HGNC:11639
Description: Enables beta-catenin binding activity and transcription cis-regulatory region binding activity. Involved in cellular response to interleukin-4. Located in nuclear body. Biomarker of prostate cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ36364; MGC47735; T-cell-factor-7; T-cell-specific transcription factor 1; TCF-1; transcription factor 7 (T-cell specific, HMG-box); transcription factor-7, T-cell specific
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,108,218 - 134,148,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,114,681 - 134,151,865 (+)EnsemblGRCh38hg38GRCh38
GRCh375133,450,372 - 133,483,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365133,478,301 - 133,511,819 (+)NCBINCBI36Build 36hg18NCBI36
Celera5129,574,095 - 129,607,613 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5128,635,317 - 128,668,890 (+)NCBIHuRef
CHM1_15132,882,980 - 132,916,497 (+)NCBICHM1_1
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP,ISO)
6-bromoindirubin-3'-oxime  (ISO)
acetaldehyde  (ISO)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (EXP)
AH23848  (EXP)
alpha-naphthoflavone  (EXP)
alpha-Zearalanol  (ISO)
amiodarone  (EXP)
amphetamine  (ISO)
aristolochic acid A  (EXP)
arsenous acid  (EXP)
Azoxymethane  (ISO)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (EXP)
beta-lapachone  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (EXP)
buta-1,3-diene  (ISO)
butanal  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
carbamazepine  (EXP)
carbon nanotube  (ISO)
casticin  (ISO)
celastrol  (ISO)
CGP 52608  (EXP)
choline  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (EXP)
cyclophosphamide  (ISO)
DDE  (EXP)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (EXP)
diazinon  (EXP,ISO)
dieldrin  (ISO)
diethylstilbestrol  (ISO)
disodium selenite  (EXP)
endosulfan  (ISO)
flavonoids  (EXP)
flusilazole  (ISO)
folic acid  (ISO)
FR900359  (EXP)
gentamycin  (ISO)
GSK-J4  (EXP)
indometacin  (EXP)
inulin  (ISO)
iron dichloride  (EXP)
isoorientin  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (EXP)
lithium atom  (ISO)
lithium hydride  (ISO)
methapyrilene  (EXP)
methoxychlor  (ISO)
naphthalene  (EXP)
nickel atom  (EXP)
nickel dichloride  (ISO)
niclosamide  (EXP,ISO)
nitrofen  (ISO)
okadaic acid  (EXP)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentanal  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
poly(I:C)  (EXP)
propanal  (EXP)
quercetin  (EXP)
quercitrin  (EXP)
resveratrol  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (EXP)
selenic acid  (ISO)
sodium arsenite  (ISO)
testosterone  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
tibolone  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. TCF transcription factors: molecular switches in carcinogenesis. Roose J and Clevers H, Biochim Biophys Acta. 1999 Oct 29;1424(2-3):M23-37.
4. TCF7 is suppressed by the androgen receptor via microRNA-1-mediated downregulation and is involved in the development of resistance to androgen deprivation in prostate cancer. Siu MK, etal., Prostate Cancer Prostatic Dis. 2017 Jun;20(2):172-178. doi: 10.1038/pcan.2017.2. Epub 2017 Feb 21.
5. Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency. Wang K, etal., Hum Genomics. 2017 Mar 16;11(1):4. doi: 10.1186/s40246-017-0101-y.
Additional References at PubMed
PMID:1569101   PMID:1989880   PMID:7579399   PMID:7640309   PMID:8622675   PMID:9488439   PMID:9783587   PMID:10489374   PMID:10896949   PMID:11266540   PMID:12408869   PMID:12477932  
PMID:12765974   PMID:12847244   PMID:14702039   PMID:14960582   PMID:15146197   PMID:15778344   PMID:16344560   PMID:16424171   PMID:16442529   PMID:17218525   PMID:17510365   PMID:18579517  
PMID:18772112   PMID:18974840   PMID:19028820   PMID:19131662   PMID:19263529   PMID:19274049   PMID:19304756   PMID:19358846   PMID:19453261   PMID:19479237   PMID:19559392   PMID:19913121  
PMID:19956102   PMID:20026746   PMID:20028982   PMID:20128911   PMID:20211142   PMID:20416077   PMID:20536507   PMID:20603037   PMID:20613673   PMID:20628086   PMID:20727791   PMID:20844743  
PMID:21285352   PMID:21339363   PMID:21447180   PMID:21814277   PMID:21833088   PMID:21873635   PMID:21881822   PMID:22095947   PMID:22111711   PMID:22466651   PMID:22535304   PMID:22550000  
PMID:22778133   PMID:23572277   PMID:23966864   PMID:24551047   PMID:25143352   PMID:25231870   PMID:25436980   PMID:25665079   PMID:25678599   PMID:25738174   PMID:25842979   PMID:25869100  
PMID:26079538   PMID:26289446   PMID:26379372   PMID:26522984   PMID:26642437   PMID:27447672   PMID:27683056   PMID:27684187   PMID:27766570   PMID:28144936   PMID:28198400   PMID:28473536  
PMID:29091867   PMID:29358218   PMID:29642232   PMID:30021253   PMID:30179681   PMID:30225781   PMID:30585266   PMID:30884312   PMID:30918012   PMID:30945288   PMID:31133633   PMID:31182584  
PMID:31248836   PMID:31253590   PMID:31488580   PMID:33128876   PMID:33159751   PMID:33416164   PMID:33644029   PMID:33961781   PMID:34172072   PMID:34230493   PMID:34535262   PMID:35140242  
PMID:35460379   PMID:35944360   PMID:36565920   PMID:36583231   PMID:36802434   PMID:36988257   PMID:37303493   PMID:37536668   PMID:37801516   PMID:38169425  


Genomics

Comparative Map Data
TCF7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385134,108,218 - 134,148,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5134,114,681 - 134,151,865 (+)EnsemblGRCh38hg38GRCh38
GRCh375133,450,372 - 133,483,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365133,478,301 - 133,511,819 (+)NCBINCBI36Build 36hg18NCBI36
Celera5129,574,095 - 129,607,613 (+)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5128,635,317 - 128,668,890 (+)NCBIHuRef
CHM1_15132,882,980 - 132,916,497 (+)NCBICHM1_1
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBIT2T-CHM13v2.0
Tcf7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391152,137,347 - 52,174,211 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1152,143,198 - 52,174,158 (-)EnsemblGRCm39 Ensembl
GRCm381152,246,527 - 52,283,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1152,252,371 - 52,283,331 (-)EnsemblGRCm38mm10GRCm38
MGSCv371152,066,106 - 52,096,073 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,096,027 - 52,125,994 (-)NCBIMGSCv36mm8
Celera1156,821,774 - 56,852,195 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.86NCBI
Tcf7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81036,924,363 - 36,954,279 (-)NCBIGRCr8
mRatBN7.21036,423,443 - 36,454,350 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1036,423,445 - 36,453,535 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01037,616,033 - 37,646,027 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1037,617,279 - 37,645,802 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01037,389,506 - 37,419,457 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,686,862 - 37,716,831 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11037,693,621 - 37,723,030 (-)NCBI
Celera1035,778,033 - 35,807,975 (-)NCBICelera
Cytogenetic Map10q22NCBI
Tcf7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554085,362,084 - 5,388,527 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554085,362,423 - 5,388,684 (+)NCBIChiLan1.0ChiLan1.0
TCF7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24129,407,016 - 129,446,603 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15127,546,618 - 127,586,165 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05129,518,134 - 129,549,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15135,671,630 - 135,704,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5135,671,095 - 135,702,734 (+)Ensemblpanpan1.1panPan2
TCF7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11122,313,113 - 22,346,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1122,313,105 - 22,344,004 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1121,059,022 - 21,092,131 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01123,113,932 - 23,147,114 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11121,814,042 - 21,847,134 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01121,679,173 - 21,712,308 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01122,321,753 - 22,354,875 (+)NCBIUU_Cfam_GSD_1.0
Tcf7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213114,092,704 - 114,122,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366471,097,019 - 1,125,729 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366471,096,726 - 1,125,753 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2136,422,940 - 136,457,910 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12136,422,740 - 136,456,323 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22142,042,088 - 142,051,487 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12336,919,648 - 36,953,088 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2336,919,745 - 36,951,192 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603440,979,669 - 41,016,821 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473338,076,410 - 38,104,173 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473338,076,800 - 38,104,265 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCF7
51 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3 copy number gain See cases [RCV000051193] Chr5:130860928..155321811 [GRCh38]
Chr5:130196621..154701371 [GRCh37]
Chr5:130224520..154681564 [NCBI36]
Chr5:5q23.3-33.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:132816203-135383158)x1 copy number loss See cases [RCV000052113] Chr5:132816203..135383158 [GRCh38]
Chr5:132151895..134718848 [GRCh37]
Chr5:132179794..134746747 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q31.1-31.2(chr5:133401565-138437038)x1 copy number loss See cases [RCV000052114] Chr5:133401565..138437038 [GRCh38]
Chr5:132737257..137772727 [GRCh37]
Chr5:132765156..137800626 [NCBI36]
Chr5:5q31.1-31.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:133531234-134847678)x1 copy number loss See cases [RCV000052115] Chr5:133531234..134847678 [GRCh38]
Chr5:132866925..134183368 [GRCh37]
Chr5:132894824..134211267 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q31.1(chr5:132301874-134187817)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053312]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053312]|See cases [RCV000053312] Chr5:132301874..134187817 [GRCh38]
Chr5:131637567..133523508 [GRCh37]
Chr5:131665466..133551407 [NCBI36]
Chr5:5q31.1		 uncertain significance
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1 copy number loss See cases [RCV000053524] Chr5:106619588..156124387 [GRCh38]
Chr5:105955289..155551397 [GRCh37]
Chr5:105983188..155483975 [NCBI36]
Chr5:5q21.3-33.2		 pathogenic
GRCh38/hg38 5q31.1(chr5:131626503-135815054)x1 copy number loss See cases [RCV000135442] Chr5:131626503..135815054 [GRCh38]
Chr5:130962196..135150743 [GRCh37]
Chr5:130990095..135178642 [NCBI36]
Chr5:5q31.1		 pathogenic
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3 copy number gain See cases [RCV000138808] Chr5:129847794..153353546 [GRCh38]
Chr5:129183487..152733106 [GRCh37]
Chr5:129211386..152713299 [NCBI36]
Chr5:5q23.3-33.2		 pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3		 likely benign
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3		 pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
NC_000005.9:g.(?_86400000)_(154000000_?)del deletion Familial adenomatous polyposis 1 [RCV004561496]|Hereditary cancer-predisposing syndrome [RCV000554476] Chr5:86400000..154000000 [GRCh37]
Chr5:5q14.3-33.2		 pathogenic
NM_003202.5(TCF7):c.332A>C (p.Glu111Ala) single nucleotide variant not specified [RCV004324248] Chr5:134115924 [GRCh38]
Chr5:133451615 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.125C>T (p.Ala42Val) single nucleotide variant not specified [RCV004312640] Chr5:134115031 [GRCh38]
Chr5:133450722 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.448G>A (p.Ala150Thr) single nucleotide variant not specified [RCV004325055] Chr5:134138065 [GRCh38]
Chr5:133473756 [GRCh37]
Chr5:5q31.1		 uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5q23.2-31.2(chr5:126377719-136270989)x1 copy number loss not provided [RCV000762739] Chr5:126377719..136270989 [GRCh37]
Chr5:5q23.2-31.2		 likely pathogenic
Single allele deletion Neurodevelopmental disorder [RCV000787436] Chr5:14685137..149511942 [GRCh37]
Chr5:5p15.2-q32		 uncertain significance
GRCh37/hg19 5q23.3-31.1(chr5:127800418-134002686) copy number loss Houge-Janssens syndrome 3 [RCV003236718] Chr5:127800418..134002686 [GRCh37]
Chr5:5q23.3-31.1		 pathogenic
GRCh37/hg19 5q31.1(chr5:132829317-134983855) copy number loss not specified [RCV002053531] Chr5:132829317..134983855 [GRCh37]
Chr5:5q31.1		 uncertain significance
GRCh37/hg19 5q31.1-31.2(chr5:132031902-137623639) copy number loss not specified [RCV002053530] Chr5:132031902..137623639 [GRCh37]
Chr5:5q31.1-31.2		 pathogenic
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
NM_003202.5(TCF7):c.299C>A (p.Pro100Gln) single nucleotide variant not specified [RCV004303431] Chr5:134115370 [GRCh38]
Chr5:133451061 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1090G>A (p.Ala364Thr) single nucleotide variant not specified [RCV004159698] Chr5:134146238 [GRCh38]
Chr5:133481929 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.37G>C (p.Gly13Arg) single nucleotide variant not specified [RCV004196158] Chr5:134114943 [GRCh38]
Chr5:133450634 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1057C>T (p.His353Tyr) single nucleotide variant not specified [RCV004126559] Chr5:134143622 [GRCh38]
Chr5:133479313 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.509A>G (p.His170Arg) single nucleotide variant not specified [RCV004134285] Chr5:134138126 [GRCh38]
Chr5:133473817 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.716C>A (p.Pro239His) single nucleotide variant not specified [RCV004229911] Chr5:134142265 [GRCh38]
Chr5:133477956 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.220G>A (p.Ala74Thr) single nucleotide variant not specified [RCV004149492] Chr5:134115126 [GRCh38]
Chr5:133450817 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.706A>T (p.Ile236Phe) single nucleotide variant not specified [RCV004141314] Chr5:134142255 [GRCh38]
Chr5:133477946 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.859G>C (p.Val287Leu) single nucleotide variant not specified [RCV004175114] Chr5:134142824 [GRCh38]
Chr5:133478515 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.359C>T (p.Thr120Ile) single nucleotide variant not specified [RCV004160040] Chr5:134115951 [GRCh38]
Chr5:133451642 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.229G>A (p.Gly77Arg) single nucleotide variant not specified [RCV004188099] Chr5:134115135 [GRCh38]
Chr5:133450826 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.466G>A (p.Gly156Ser) single nucleotide variant not specified [RCV004069709] Chr5:134138083 [GRCh38]
Chr5:133473774 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1027G>A (p.Gly343Arg) single nucleotide variant not specified [RCV004100529] Chr5:134143592 [GRCh38]
Chr5:133479283 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.335G>A (p.Cys112Tyr) single nucleotide variant not specified [RCV004242391] Chr5:134115927 [GRCh38]
Chr5:133451618 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1069A>G (p.Thr357Ala) single nucleotide variant not specified [RCV004168751] Chr5:134143634 [GRCh38]
Chr5:133479325 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.458C>A (p.Pro153His) single nucleotide variant not specified [RCV004184041] Chr5:134138075 [GRCh38]
Chr5:133473766 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.212T>G (p.Val71Gly) single nucleotide variant not specified [RCV004095514] Chr5:134115118 [GRCh38]
Chr5:133450809 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.58C>T (p.Pro20Ser) single nucleotide variant not specified [RCV004089550] Chr5:134114964 [GRCh38]
Chr5:133450655 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.217G>A (p.Gly73Arg) single nucleotide variant not specified [RCV004285211] Chr5:134115123 [GRCh38]
Chr5:133450814 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.331G>C (p.Glu111Gln) single nucleotide variant not specified [RCV004268597] Chr5:134115923 [GRCh38]
Chr5:133451614 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.215C>T (p.Pro72Leu) single nucleotide variant not specified [RCV004263274] Chr5:134115121 [GRCh38]
Chr5:133450812 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.569C>T (p.Pro190Leu) single nucleotide variant not specified [RCV004358833] Chr5:134138972 [GRCh38]
Chr5:133474663 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.369C>T (p.Ser123=) single nucleotide variant not provided [RCV003428608] Chr5:134115961 [GRCh38]
Chr5:133451652 [GRCh37]
Chr5:5q31.1		 likely benign
NM_003202.5(TCF7):c.1076-449T>C single nucleotide variant not provided [RCV003429769] Chr5:134145775 [GRCh38]
Chr5:133481466 [GRCh37]
Chr5:5q31.1		 likely benign
NM_003202.5(TCF7):c.402C>T (p.Pro134=) single nucleotide variant not provided [RCV003428609] Chr5:134115994 [GRCh38]
Chr5:133451685 [GRCh37]
Chr5:5q31.1		 likely benign
NM_003202.5(TCF7):c.232G>A (p.Ala78Thr) single nucleotide variant not specified [RCV004466491] Chr5:134115138 [GRCh38]
Chr5:133450829 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.863T>C (p.Ile288Thr) single nucleotide variant not specified [RCV004466495] Chr5:134142828 [GRCh38]
Chr5:133478519 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.458C>G (p.Pro153Arg) single nucleotide variant not specified [RCV004466494] Chr5:134138075 [GRCh38]
Chr5:133473766 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.361G>A (p.Val121Ile) single nucleotide variant not specified [RCV004466492] Chr5:134115953 [GRCh38]
Chr5:133451644 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.956A>G (p.Tyr319Cys) single nucleotide variant not specified [RCV004466497] Chr5:134143030 [GRCh38]
Chr5:133478721 [GRCh37]
Chr5:5q31.1		 uncertain significance
GRCh37/hg19 5q23.2-31.1(chr5:124864529-134720575)x1 copy number loss not provided [RCV004577463] Chr5:124864529..134720575 [GRCh37]
Chr5:5q23.2-31.1		 pathogenic
NM_003202.5(TCF7):c.14A>G (p.Asp5Gly) single nucleotide variant not specified [RCV004466489] Chr5:134114920 [GRCh38]
Chr5:133450611 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1042C>T (p.Arg348Trp) single nucleotide variant not specified [RCV004682087] Chr5:134143607 [GRCh38]
Chr5:133479298 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.82G>A (p.Asp28Asn) single nucleotide variant not specified [RCV004682088] Chr5:134114988 [GRCh38]
Chr5:133450679 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1130C>T (p.Pro377Leu) single nucleotide variant not specified [RCV004871824] Chr5:134146278 [GRCh38]
Chr5:133481969 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.223G>T (p.Gly75Cys) single nucleotide variant not specified [RCV004871825] Chr5:134115129 [GRCh38]
Chr5:133450820 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.505C>G (p.Pro169Ala) single nucleotide variant not specified [RCV004871826] Chr5:134138122 [GRCh38]
Chr5:133473813 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.481T>A (p.Ser161Thr) single nucleotide variant not specified [RCV004871827] Chr5:134138098 [GRCh38]
Chr5:133473789 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.314A>G (p.Asp105Gly) single nucleotide variant not specified [RCV004871828] Chr5:134115385 [GRCh38]
Chr5:133451076 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.325G>T (p.Ala109Ser) single nucleotide variant not specified [RCV004871829] Chr5:134115917 [GRCh38]
Chr5:133451608 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.557C>G (p.Pro186Arg) single nucleotide variant not specified [RCV004871830] Chr5:134138960 [GRCh38]
Chr5:133474651 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.299C>T (p.Pro100Leu) single nucleotide variant not specified [RCV004871831] Chr5:134115370 [GRCh38]
Chr5:133451061 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.1084A>G (p.Arg362Gly) single nucleotide variant not specified [RCV004871832] Chr5:134146232 [GRCh38]
Chr5:133481923 [GRCh37]
Chr5:5q31.1		 uncertain significance
NM_003202.5(TCF7):c.500A>G (p.Asn167Ser) single nucleotide variant not specified [RCV004871833] Chr5:134138117 [GRCh38]
Chr5:133473808 [GRCh37]
Chr5:5q31.1		 likely benign
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:9749
Count of miRNA genes:1236
Interacting mature miRNAs:1617
Transcripts:ENST00000321584, ENST00000321603, ENST00000342854, ENST00000378560, ENST00000378564, ENST00000395023, ENST00000395029, ENST00000432532, ENST00000517478, ENST00000517741, ENST00000517799, ENST00000517851, ENST00000517855, ENST00000518887, ENST00000518915, ENST00000519037, ENST00000519165, ENST00000519238, ENST00000519447, ENST00000520652, ENST00000520699, ENST00000520958, ENST00000521639, ENST00000521970, ENST00000522375, ENST00000522561, ENST00000522653, ENST00000524342
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597054325GWAS1150399_Hmultiple sclerosis QTL GWAS1150399 (human)3e-14multiple sclerosis5134114136134114137Human
597057845GWAS1153919_Heosinophil count QTL GWAS1153919 (human)9e-19eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)5134115992134115993Human
597072592GWAS1168666_Hmultiple sclerosis QTL GWAS1168666 (human)9e-11multiple sclerosis5134110884134110885Human
597263934GWAS1360008_Heosinophil count QTL GWAS1360008 (human)8e-09eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)5134115992134115993Human
597057055GWAS1153129_Heosinophil count QTL GWAS1153129 (human)2e-17eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)5134115992134115993Human
406945119GWAS594095_Heosinophil percentage of leukocytes QTL GWAS594095 (human)2e-16eosinophil quantity (VT:0002602)blood eosinophil count to total leukocyte count ratio (CMO:0000369)5134115992134115993Human
597158217GWAS1254291_HIGA glomerulonephritis QTL GWAS1254291 (human)0.000007IGA glomerulonephritis5134120270134120271Human
406912415GWAS561391_Hmultiple sclerosis QTL GWAS561391 (human)0.0000006multiple sclerosis5134110884134110885Human
407101196GWAS750172_Heosinophil count QTL GWAS750172 (human)1e-16eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)5134115992134115993Human

Markers in Region
SGC35448  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,481,908 - 133,482,124UniSTSGRCh37
Build 365133,509,807 - 133,510,023RGDNCBI36
Celera5129,605,601 - 129,605,817RGD
Cytogenetic Map5q31.1UniSTS
HuRef5128,666,878 - 128,667,094UniSTS
GeneMap99-GB4 RH Map5502.16UniSTS
Whitehead-RH Map5423.6UniSTS
PMC126018P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,477,876 - 133,478,772UniSTSGRCh37
Build 365133,505,775 - 133,506,671RGDNCBI36
Celera5129,601,569 - 129,602,465RGD
Cytogenetic Map5q31.1UniSTS
HuRef5128,662,846 - 128,663,742UniSTS
PMC154232P3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,482,498 - 133,482,579UniSTSGRCh37
Build 365133,510,397 - 133,510,478RGDNCBI36
Celera5129,606,191 - 129,606,272RGD
Cytogenetic Map5q31.1UniSTS
HuRef5128,667,468 - 128,667,549UniSTS
TCF7_1076  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,483,206 - 133,484,018UniSTSGRCh37
Build 365133,511,105 - 133,511,917RGDNCBI36
Celera5129,606,899 - 129,607,711RGD
HuRef5128,668,176 - 128,668,988UniSTS
SGC35447  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,481,591 - 133,481,795UniSTSGRCh37
Build 365133,509,490 - 133,509,694RGDNCBI36
Celera5129,605,284 - 129,605,488RGD
Cytogenetic Map5q31.1UniSTS
HuRef5128,666,561 - 128,666,765UniSTS
GeneMap99-GB4 RH Map5502.06UniSTS
Whitehead-RH Map5421.9UniSTS
Tcf7  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375133,478,705 - 133,478,771UniSTSGRCh37
Celera5129,602,398 - 129,602,464UniSTS
HuRef5128,663,675 - 128,663,741UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
1204 2436 2788 2244 4944 1722 2346 4 624 1926 465 2268 7266 6434 52 3709 1 851 1737 1611 172

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_030367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001134851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001366502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_213648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006714686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011543613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017009790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047417643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054353336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001742231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001742232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_948292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_948294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC011336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF163776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN274309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR976030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA627229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB106996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB127975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB128524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB137814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB145426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB161143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GN344133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI179100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI179102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI179104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI179106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI179108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY048657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X63901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z47361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z47362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z47363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z47364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z47365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000342854   ⟹   ENSP00000340347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,114,681 - 134,148,210 (+)Ensembl
Ensembl Acc Id: ENST00000378560   ⟹   ENSP00000367822
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,607 - 134,148,229 (+)Ensembl
Ensembl Acc Id: ENST00000395023   ⟹   ENSP00000378469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,625 - 134,148,229 (+)Ensembl
Ensembl Acc Id: ENST00000395029   ⟹   ENSP00000378472
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,114,712 - 134,148,210 (+)Ensembl
Ensembl Acc Id: ENST00000517478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,138,104 - 134,141,350 (+)Ensembl
Ensembl Acc Id: ENST00000517741   ⟹   ENSP00000427758
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,659 - 134,142,265 (+)Ensembl
Ensembl Acc Id: ENST00000517799   ⟹   ENSP00000427968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,142,216 - 134,146,303 (+)Ensembl
Ensembl Acc Id: ENST00000517851   ⟹   ENSP00000429946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,563 - 134,142,304 (+)Ensembl
Ensembl Acc Id: ENST00000517855   ⟹   ENSP00000429178
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,142,185 - 134,146,707 (+)Ensembl
Ensembl Acc Id: ENST00000518887   ⟹   ENSP00000430617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,201 - 134,142,262 (+)Ensembl
Ensembl Acc Id: ENST00000518915   ⟹   ENSP00000430179
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,625 - 134,146,185 (+)Ensembl
Ensembl Acc Id: ENST00000519037   ⟹   ENSP00000429696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,123,618 - 134,142,814 (+)Ensembl
Ensembl Acc Id: ENST00000519165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,911 - 134,139,858 (+)Ensembl
Ensembl Acc Id: ENST00000519238
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,141,464 - 134,147,027 (+)Ensembl
Ensembl Acc Id: ENST00000519447   ⟹   ENSP00000431095
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,641 - 134,142,747 (+)Ensembl
Ensembl Acc Id: ENST00000520652   ⟹   ENSP00000429817
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,956 - 134,142,813 (+)Ensembl
Ensembl Acc Id: ENST00000520699   ⟹   ENSP00000429935
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,142,792 - 134,151,865 (+)Ensembl
Ensembl Acc Id: ENST00000520958   ⟹   ENSP00000429547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,610 - 134,146,573 (+)Ensembl
Ensembl Acc Id: ENST00000521639   ⟹   ENSP00000427782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,563 - 134,142,752 (+)Ensembl
Ensembl Acc Id: ENST00000521970
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,137,865 - 134,139,252 (+)Ensembl
Ensembl Acc Id: ENST00000522375   ⟹   ENSP00000427870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,607 - 134,148,143 (+)Ensembl
Ensembl Acc Id: ENST00000522561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,138,601 - 134,143,040 (+)Ensembl
Ensembl Acc Id: ENST00000522653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,115,352 - 134,147,983 (+)Ensembl
Ensembl Acc Id: ENST00000524342
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5134,140,535 - 134,148,236 (+)Ensembl
RefSeq Acc Id: NM_001134851   ⟹   NP_001128323
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,883,876 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346425   ⟹   NP_001333354
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001346450   ⟹   NP_001333379
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001366502   ⟹   NP_001353431
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,123,618 - 134,148,210 (+)NCBI
T2T-CHM13v2.05134,647,247 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003202   ⟹   NP_003193
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
Build 365133,478,301 - 133,511,819 (+)NCBI Archive
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,882,980 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_201632   ⟹   NP_963963
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
Build 365133,479,215 - 133,511,819 (+)NCBI Archive
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,883,876 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_201634   ⟹   NP_963965
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
Build 365133,479,215 - 133,511,819 (+)NCBI Archive
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,883,876 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_213648   ⟹   NP_998813
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
Build 365133,479,326 - 133,511,819 (+)NCBI Archive
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,883,876 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: NR_033449
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
GRCh375133,450,402 - 133,483,920 (+)ENTREZGENE
HuRef5128,635,317 - 128,668,890 (+)ENTREZGENE
CHM1_15132,883,928 - 132,916,497 (+)NCBI
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714678   ⟹   XP_006714741
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714679   ⟹   XP_006714742
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714682   ⟹   XP_006714745
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714684   ⟹   XP_006714747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714685   ⟹   XP_006714748
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006714686   ⟹   XP_006714749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011543604   ⟹   XP_011541906
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,146,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011543606   ⟹   XP_011541908
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047417633   ⟹   XP_047273589
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417634   ⟹   XP_047273590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417635   ⟹   XP_047273591
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417636   ⟹   XP_047273592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417637   ⟹   XP_047273593
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417638   ⟹   XP_047273594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417639   ⟹   XP_047273595
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417640   ⟹   XP_047273596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417641   ⟹   XP_047273597
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,108,218 - 134,148,210 (+)NCBI
RefSeq Acc Id: XM_047417642   ⟹   XP_047273598
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,140,883 (+)NCBI
RefSeq Acc Id: XM_047417643   ⟹   XP_047273599
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,142,275 (+)NCBI
RefSeq Acc Id: XM_054353315   ⟹   XP_054209290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353316   ⟹   XP_054209291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353317   ⟹   XP_054209292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,669,873 (+)NCBI
RefSeq Acc Id: XM_054353318   ⟹   XP_054209293
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353319   ⟹   XP_054209294
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353320   ⟹   XP_054209295
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353321   ⟹   XP_054209296
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353322   ⟹   XP_054209297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353323   ⟹   XP_054209298
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353324   ⟹   XP_054209299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353325   ⟹   XP_054209300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353326   ⟹   XP_054209301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353327   ⟹   XP_054209302
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353328   ⟹   XP_054209303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353329   ⟹   XP_054209304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,630,059 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353330   ⟹   XP_054209305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353331   ⟹   XP_054209306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,639,242 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353332   ⟹   XP_054209307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,639,538 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353333   ⟹   XP_054209308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,642,538 - 134,671,840 (+)NCBI
RefSeq Acc Id: XM_054353334   ⟹   XP_054209309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,664,512 (+)NCBI
RefSeq Acc Id: XM_054353335   ⟹   XP_054209310
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,310 - 134,665,904 (+)NCBI
RefSeq Acc Id: XM_054353336   ⟹   XP_054209311
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.05134,638,956 - 134,671,840 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001128323 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333354 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333379 (Get FASTA)   NCBI Sequence Viewer  
  NP_001353431 (Get FASTA)   NCBI Sequence Viewer  
  NP_003193 (Get FASTA)   NCBI Sequence Viewer  
  NP_963963 (Get FASTA)   NCBI Sequence Viewer  
  NP_963965 (Get FASTA)   NCBI Sequence Viewer  
  NP_998813 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714741 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714742 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714745 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714747 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714748 (Get FASTA)   NCBI Sequence Viewer  
  XP_006714749 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541906 (Get FASTA)   NCBI Sequence Viewer  
  XP_011541908 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273589 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273590 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273591 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273592 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273593 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273594 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273595 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273596 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273597 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273598 (Get FASTA)   NCBI Sequence Viewer  
  XP_047273599 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209290 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209291 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209292 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209293 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209294 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209295 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209296 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209297 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209298 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209299 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209300 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209301 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209302 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209303 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209304 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209305 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209306 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209307 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209308 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209309 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209310 (Get FASTA)   NCBI Sequence Viewer  
  XP_054209311 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF00616 (Get FASTA)   NCBI Sequence Viewer  
  AAH48769 (Get FASTA)   NCBI Sequence Viewer  
  AAH72023 (Get FASTA)   NCBI Sequence Viewer  
  BAG51937 (Get FASTA)   NCBI Sequence Viewer  
  BAG52735 (Get FASTA)   NCBI Sequence Viewer  
  BAG52748 (Get FASTA)   NCBI Sequence Viewer  
  CAA42526 (Get FASTA)   NCBI Sequence Viewer  
  CAA42527 (Get FASTA)   NCBI Sequence Viewer  
  CAA42528 (Get FASTA)   NCBI Sequence Viewer  
  CAA87439 (Get FASTA)   NCBI Sequence Viewer  
  CAA87440 (Get FASTA)   NCBI Sequence Viewer  
  CAA87441 (Get FASTA)   NCBI Sequence Viewer  
  CAA87442 (Get FASTA)   NCBI Sequence Viewer  
  CAB56795 (Get FASTA)   NCBI Sequence Viewer  
  CAY55999 (Get FASTA)   NCBI Sequence Viewer  
  CAY56000 (Get FASTA)   NCBI Sequence Viewer  
  CAY56001 (Get FASTA)   NCBI Sequence Viewer  
  CAY56002 (Get FASTA)   NCBI Sequence Viewer  
  CBX53858 (Get FASTA)   NCBI Sequence Viewer  
  CBX53859 (Get FASTA)   NCBI Sequence Viewer  
  CBX53860 (Get FASTA)   NCBI Sequence Viewer  
  CBX53861 (Get FASTA)   NCBI Sequence Viewer  
  CBX53862 (Get FASTA)   NCBI Sequence Viewer  
  EAW62277 (Get FASTA)   NCBI Sequence Viewer  
  EAW62278 (Get FASTA)   NCBI Sequence Viewer  
  EAW62279 (Get FASTA)   NCBI Sequence Viewer  
  EAW62280 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000340347
  ENSP00000340347.5
  ENSP00000367822
  ENSP00000367822.4
  ENSP00000378469
  ENSP00000378469.1
  ENSP00000427870
  ENSP00000429547
  ENSP00000429547.1
  ENSP00000430179
  ENSP00000430179.1
GenBank Protein P36402 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_003193   ⟸   NM_003202
- Peptide Label: isoform 1
- UniProtKB: P36402 (UniProtKB/Swiss-Prot),   B3KQ75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_998813   ⟸   NM_213648
- Peptide Label: isoform 2
- UniProtKB: E5RG34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_963965   ⟸   NM_201634
- Peptide Label: isoform 4
- UniProtKB: E5RG34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001128323   ⟸   NM_001134851
- Peptide Label: isoform 3
- UniProtKB: E5RG34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_963963   ⟸   NM_201632
- Peptide Label: isoform 2
- UniProtKB: E5RG34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006714741   ⟸   XM_006714678
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006714742   ⟸   XM_006714679
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006714745   ⟸   XM_006714682
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006714747   ⟸   XM_006714684
- Peptide Label: isoform X14
- UniProtKB: P36402 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006714749   ⟸   XM_006714686
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_006714748   ⟸   XM_006714685
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_011541908   ⟸   XM_011543606
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_011541906   ⟸   XM_011543604
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001333354   ⟸   NM_001346425
- Peptide Label: isoform 5
- UniProtKB: P36402 (UniProtKB/Swiss-Prot),   B3KQ75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001333379   ⟸   NM_001346450
- Peptide Label: isoform 7
- UniProtKB: E5RG34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001353431   ⟸   NM_001366502
- Peptide Label: isoform 8
Ensembl Acc Id: ENSP00000427968   ⟸   ENST00000517799
Ensembl Acc Id: ENSP00000427758   ⟸   ENST00000517741
Ensembl Acc Id: ENSP00000429946   ⟸   ENST00000517851
Ensembl Acc Id: ENSP00000429178   ⟸   ENST00000517855
Ensembl Acc Id: ENSP00000430179   ⟸   ENST00000518915
Ensembl Acc Id: ENSP00000430617   ⟸   ENST00000518887
Ensembl Acc Id: ENSP00000429696   ⟸   ENST00000519037
Ensembl Acc Id: ENSP00000431095   ⟸   ENST00000519447
Ensembl Acc Id: ENSP00000429547   ⟸   ENST00000520958
Ensembl Acc Id: ENSP00000429935   ⟸   ENST00000520699
Ensembl Acc Id: ENSP00000429817   ⟸   ENST00000520652
Ensembl Acc Id: ENSP00000367822   ⟸   ENST00000378560
Ensembl Acc Id: ENSP00000427782   ⟸   ENST00000521639
Ensembl Acc Id: ENSP00000427870   ⟸   ENST00000522375
Ensembl Acc Id: ENSP00000378472   ⟸   ENST00000395029
Ensembl Acc Id: ENSP00000378469   ⟸   ENST00000395023
Ensembl Acc Id: ENSP00000340347   ⟸   ENST00000342854
RefSeq Acc Id: XP_047273592   ⟸   XM_047417636
- Peptide Label: isoform X9
RefSeq Acc Id: XP_047273596   ⟸   XM_047417640
- Peptide Label: isoform X13
RefSeq Acc Id: XP_047273590   ⟸   XM_047417634
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047273591   ⟸   XM_047417635
- Peptide Label: isoform X6
RefSeq Acc Id: XP_047273597   ⟸   XM_047417641
- Peptide Label: isoform X15
RefSeq Acc Id: XP_047273594   ⟸   XM_047417638
- Peptide Label: isoform X11
RefSeq Acc Id: XP_047273589   ⟸   XM_047417633
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047273593   ⟸   XM_047417637
- Peptide Label: isoform X10
RefSeq Acc Id: XP_047273595   ⟸   XM_047417639
- Peptide Label: isoform X12
RefSeq Acc Id: XP_047273599   ⟸   XM_047417643
- Peptide Label: isoform X18
RefSeq Acc Id: XP_047273598   ⟸   XM_047417642
- Peptide Label: isoform X18
RefSeq Acc Id: XP_054209298   ⟸   XM_054353323
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054209302   ⟸   XM_054353327
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054209294   ⟸   XM_054353319
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054209295   ⟸   XM_054353320
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054209304   ⟸   XM_054353329
- Peptide Label: isoform X15
RefSeq Acc Id: XP_054209300   ⟸   XM_054353325
- Peptide Label: isoform X11
RefSeq Acc Id: XP_054209290   ⟸   XM_054353315
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054209293   ⟸   XM_054353318
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054209296   ⟸   XM_054353321
- Peptide Label: isoform X7
RefSeq Acc Id: XP_054209297   ⟸   XM_054353322
- Peptide Label: isoform X8
RefSeq Acc Id: XP_054209291   ⟸   XM_054353316
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054209299   ⟸   XM_054353324
- Peptide Label: isoform X10
RefSeq Acc Id: XP_054209301   ⟸   XM_054353326
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054209303   ⟸   XM_054353328
- Peptide Label: isoform X14
RefSeq Acc Id: XP_054209292   ⟸   XM_054353317
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054209310   ⟸   XM_054353335
- Peptide Label: isoform X18
RefSeq Acc Id: XP_054209309   ⟸   XM_054353334
- Peptide Label: isoform X18
RefSeq Acc Id: XP_054209311   ⟸   XM_054353336
- Peptide Label: isoform X20
- UniProtKB: B3KSI6 (UniProtKB/TrEMBL),   B3KQ75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054209305   ⟸   XM_054353330
- Peptide Label: isoform X16
RefSeq Acc Id: XP_054209306   ⟸   XM_054353331
- Peptide Label: isoform X17
RefSeq Acc Id: XP_054209307   ⟸   XM_054353332
- Peptide Label: isoform X19
RefSeq Acc Id: XP_054209308   ⟸   XM_054353333
- Peptide Label: isoform X19
Protein Domains
CTNNB1 binding N-teminal   HMG box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P36402-F1-model_v2 AlphaFold P36402 1-384 view protein structure

Promoters
RGD ID:6803048
Promoter ID:HG_KWN:51106
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid
Transcripts:ENST00000321584,   ENST00000321603,   ENST00000334185,   ENST00000378564,   ENST00000395023,   ENST00000395029,   NM_001134851,   UC003KYT.1,   UC003KYV.1,   UC003KYX.1,   UC003KYY.1,   UC003KYZ.1,   UC003KZA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 365133,477,761 - 133,479,237 (+)MPROMDB
RGD ID:6812861
Promoter ID:HG_ACW:65276
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   Lymphoblastoid
Transcripts:SPARSLERBY.AAPR07-UNSPLICED,   TCF7.VJAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 365133,480,141 - 133,480,641 (+)MPROMDB
RGD ID:6803596
Promoter ID:HG_KWN:51107
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:UC003KZB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 365133,504,096 - 133,505,812 (+)MPROMDB
RGD ID:6803047
Promoter ID:HG_KWN:51108
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000378560,   UC010JDU.1
Position:
Human AssemblyChrPosition (strand)Source
Build 365133,506,486 - 133,507,347 (+)MPROMDB
RGD ID:6812867
Promoter ID:HG_ACW:65280
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:TCF7.VHAPR07-UNSPLICED
Position:
Human AssemblyChrPosition (strand)Source
Build 365133,515,216 - 133,515,716 (+)MPROMDB
RGD ID:6870580
Promoter ID:EPDNEW_H8455
Type:initiation region
Name:TCF7_1
Description:transcription factor 7 (T-cell specific, HMG-box)
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8456  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,114,681 - 134,114,741EPDNEW
RGD ID:6870582
Promoter ID:EPDNEW_H8456
Type:initiation region
Name:TCF7_2
Description:transcription factor 7 (T-cell specific, HMG-box)
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H8455  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385134,115,613 - 134,115,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11639 AgrOrtholog
COSMIC TCF7 COSMIC
Ensembl Genes ENSG00000081059 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000342854 ENTREZGENE
  ENST00000342854.10 UniProtKB/Swiss-Prot
  ENST00000378560 ENTREZGENE
  ENST00000378560.8 UniProtKB/Swiss-Prot
  ENST00000395023 ENTREZGENE
  ENST00000395023.5 UniProtKB/Swiss-Prot
  ENST00000518915 ENTREZGENE
  ENST00000518915.5 UniProtKB/Swiss-Prot
  ENST00000520958 ENTREZGENE
  ENST00000520958.5 UniProtKB/Swiss-Prot
  ENST00000522375 ENTREZGENE
Gene3D-CATH 1.10.30.10 UniProtKB/Swiss-Prot
  4.10.900.10 UniProtKB/Swiss-Prot
GTEx ENSG00000081059 GTEx
HGNC ID HGNC:11639 ENTREZGENE
Human Proteome Map TCF7 Human Proteome Map
InterPro Catenin_binding_dom_sf UniProtKB/Swiss-Prot
  CTNNB1-bd_N UniProtKB/Swiss-Prot
  HMG_box_dom UniProtKB/Swiss-Prot
  HMG_box_dom_sf UniProtKB/Swiss-Prot
  TCF/LEF UniProtKB/Swiss-Prot
KEGG Report hsa:6932 UniProtKB/Swiss-Prot
NCBI Gene 6932 ENTREZGENE
OMIM 189908 OMIM
PANTHER PTHR10373 UniProtKB/Swiss-Prot
  PTHR10373:SF33 UniProtKB/Swiss-Prot
Pfam CTNNB1_binding UniProtKB/Swiss-Prot
  HMG_box UniProtKB/Swiss-Prot
PharmGKB PA36392 PharmGKB
PROSITE HMG_BOX_2 UniProtKB/Swiss-Prot
SMART HMG UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47095 UniProtKB/Swiss-Prot
UniProt B3KQ75 ENTREZGENE, UniProtKB/TrEMBL
  B3KSI6 ENTREZGENE, UniProtKB/TrEMBL
  B7WNT5_HUMAN UniProtKB/TrEMBL
  E5RG34 ENTREZGENE, UniProtKB/TrEMBL
  E5RG75_HUMAN UniProtKB/TrEMBL
  E5RGJ5_HUMAN UniProtKB/TrEMBL
  E5RGQ1_HUMAN UniProtKB/TrEMBL
  E5RHL1_HUMAN UniProtKB/TrEMBL
  E5RJ51_HUMAN UniProtKB/TrEMBL
  H0YAR8_HUMAN UniProtKB/TrEMBL
  H0YBC8_HUMAN UniProtKB/TrEMBL
  H0YBM1_HUMAN UniProtKB/TrEMBL
  H0YBP2_HUMAN UniProtKB/TrEMBL
  P36402 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3KSH3 UniProtKB/Swiss-Prot
  Q86WR9 UniProtKB/Swiss-Prot
  Q9UKI4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-05-16 TCF7  transcription factor 7  TCF7  transcription factor 7 (T-cell specific, HMG-box)  Symbol and/or name change 5135510 APPROVED