Clmp (CXADR-like membrane protein) - Rat Genome Database

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Pathways
Gene: Clmp (CXADR-like membrane protein) Mus musculus
Analyze
Symbol: Clmp
Name: CXADR-like membrane protein
RGD ID: 1313983
MGI Page MGI
Description: Predicted to be involved in digestive tract development. Predicted to be located in bicellular tight junction and cytoplasmic microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in short bowel syndrome. Orthologous to human CLMP (CXADR like membrane protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9030425E11Rik; ACAM; adipocyte adhesion molecule; adipocyte-specific protein 5; ASP5; AW557819; CAR-like membrane protein; coxsackie- and adenovirus receptor-like membrane protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,596,975 - 40,696,849 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,597,258 - 40,696,615 (+)EnsemblGRCm39 Ensembl
GRCm38940,682,123 - 40,785,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl940,685,962 - 40,785,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37940,494,047 - 40,592,129 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36940,437,033 - 40,535,115 (+)NCBIMGSCv36mm8
Celera937,919,429 - 38,017,479 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14573622   PMID:14610273   PMID:15563274   PMID:16141072   PMID:16141073   PMID:16618939  
PMID:17538635   PMID:17620326   PMID:17967808   PMID:18047469   PMID:18799693   PMID:20562862   PMID:21267068   PMID:21677750   PMID:22815831   PMID:25826454   PMID:26956488   PMID:29361518  
PMID:31146259   PMID:33084169   PMID:33259866   PMID:33408624   PMID:36288084  


Genomics

Comparative Map Data
Clmp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39940,596,975 - 40,696,849 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl940,597,258 - 40,696,615 (+)EnsemblGRCm39 Ensembl
GRCm38940,682,123 - 40,785,553 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl940,685,962 - 40,785,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv37940,494,047 - 40,592,129 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36940,437,033 - 40,535,115 (+)NCBIMGSCv36mm8
Celera937,919,429 - 38,017,479 (+)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map921.42NCBI
CLMP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,069,872 - 123,195,248 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,069,872 - 123,195,248 (-)EnsemblGRCh38hg38GRCh38
GRCh3711122,940,580 - 123,065,956 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611122,448,230 - 122,571,217 (-)NCBINCBI36Build 36hg18NCBI36
Celera11120,102,350 - 120,225,315 (-)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11118,884,692 - 119,007,600 (-)NCBIHuRef
CHM1_111122,829,032 - 122,951,924 (-)NCBICHM1_1
T2T-CHM13v2.011123,098,457 - 123,223,763 (-)NCBIT2T-CHM13v2.0
Clmp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2841,060,527 - 41,168,841 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl841,060,799 - 41,168,838 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx846,559,569 - 46,668,056 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0844,838,179 - 44,946,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0842,705,779 - 42,814,242 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0844,846,685 - 44,975,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl844,847,157 - 44,975,457 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0846,020,805 - 46,148,061 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4843,661,696 - 43,769,479 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1843,670,461 - 43,778,242 (+)NCBI
Celera840,662,471 - 40,768,359 (+)NCBICelera
Cytogenetic Map8q22NCBI
Clmp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541223,876,003 - 23,970,119 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541223,876,003 - 23,984,603 (-)NCBIChiLan1.0ChiLan1.0
CLMP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan111124,874,977 - 124,997,290 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011117,902,792 - 118,023,936 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111121,824,389 - 121,942,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11121,824,398 - 121,942,055 (-)Ensemblpanpan1.1panPan2
CLMP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1511,255,054 - 11,289,578 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl511,267,038 - 11,286,682 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha511,246,302 - 11,345,522 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0511,141,243 - 11,240,485 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl511,141,239 - 11,240,456 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1511,244,300 - 11,343,931 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0511,175,179 - 11,276,711 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0511,221,449 - 11,320,980 (+)NCBIUU_Cfam_GSD_1.0
Clmp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947104,667,596 - 104,763,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365427,587,272 - 7,685,144 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365427,591,223 - 7,685,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLMP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl949,989,767 - 50,093,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1949,989,967 - 50,094,223 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,394,444 - 55,402,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLMP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,461,052 - 114,575,178 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,462,833 - 114,575,154 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604311,630,291 - 11,668,135 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clmp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248801,965,476 - 2,059,420 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248801,965,264 - 2,063,241 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Clmp
4124 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1114
Count of miRNA genes:658
Interacting mature miRNAs:782
Transcripts:ENSMUST00000034522, ENSMUST00000134153, ENSMUST00000139577, ENSMUST00000141759
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13504833Bglu19_mblood glucose level 19 (mouse)9991076843910768Mouse
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
1301000Obq5_mobesity QTL 5 (mouse)Not determined92850333341799326Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1357682Phdlc1_mplasma HDL cholesterol 1 (mouse)Not determined93410461942764866Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
1301007Pid2_mprion incubation determinant 2 (mouse)Not determined93715336244251323Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse

Markers in Region
AW557819  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38940,782,829 - 40,782,966UniSTSGRCm38
MGSCv37940,590,912 - 40,591,049UniSTSGRCm37
Celera938,016,269 - 38,016,406UniSTS
Cytogenetic Map9A5.1UniSTS
Whitehead/MRC_RH9466.62UniSTS
D9Mit253  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38940,734,078 - 40,734,294UniSTSGRCm38
MGSCv37940,542,161 - 40,542,377UniSTSGRCm37
Celera937,967,771 - 37,967,993UniSTS
Cytogenetic Map9A5.1UniSTS
cM Map921.0UniSTS
Whitehead Genetic916.4UniSTS
Whitehead/MRC_RH9434.95UniSTS
Whitehead_YAC9 UniSTS
UniSTS:236099  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37940,578,673 - 40,578,971UniSTSGRCm37
Celera938,004,382 - 38,004,665UniSTS
Celera938,004,309 - 38,004,665UniSTS
Celera938,004,336 - 38,004,665UniSTS
UniSTS:236105  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38940,785,066 - 40,785,272UniSTSGRCm38
MGSCv37940,593,149 - 40,593,355UniSTSGRCm37
Celera938,018,503 - 38,018,705UniSTS
Cytogenetic Map9A5.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_133733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006510603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003948007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC140409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY259213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY326421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000034522   ⟹   ENSMUSP00000034522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,597,308 - 40,696,615 (+)Ensembl
GRCm38.p6 Ensembl940,686,012 - 40,785,319 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,685,390 - 40,693,767 (+)Ensembl
GRCm38.p6 Ensembl940,774,094 - 40,782,471 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,597,258 - 40,672,356 (+)Ensembl
GRCm38.p6 Ensembl940,685,962 - 40,761,060 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl940,597,331 - 40,672,479 (+)Ensembl
GRCm38.p6 Ensembl940,686,035 - 40,761,183 (+)Ensembl
RefSeq Acc Id: NM_133733   ⟹   NP_598494
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,597,315 - 40,696,615 (+)NCBI
GRCm38940,686,019 - 40,785,319 (+)NCBI
MGSCv37940,494,047 - 40,592,129 (+)RGD
Celera937,919,429 - 38,017,479 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006510602   ⟹   XP_006510665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,621,261 - 40,696,849 (+)NCBI
GRCm38940,709,965 - 40,785,315 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006510603   ⟹   XP_006510666
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,648,571 - 40,696,849 (+)NCBI
GRCm38940,737,303 - 40,785,553 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003948007
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39940,596,975 - 40,696,844 (+)NCBI
GRCm38940,682,123 - 40,785,315 (+)NCBI
Sequence:
RefSeq Acc Id: NP_598494   ⟸   NM_133733
- Peptide Label: precursor
- UniProtKB: Q920S5 (UniProtKB/Swiss-Prot),   Q8R373 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006510665   ⟸   XM_006510602
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006510666   ⟸   XM_006510603
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000034522   ⟸   ENSMUST00000034522
Protein Domains
Ig-like C2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R373-F1-model_v2 AlphaFold Q8R373 1-373 view protein structure

Promoters
RGD ID:6844003
Promoter ID:MM_KWN:57006
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000098872,   UC009OZW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36940,588,266 - 40,588,766 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918816 AgrOrtholog
Ensembl Genes ENSMUSG00000032024 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034522 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034522 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro CLMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Ig_sub2 UniProtKB/Swiss-Prot
  Ig_V-set UniProtKB/Swiss-Prot
KEGG Report mmu:71566 UniProtKB/Swiss-Prot
MGD MGI:1918816 ENTREZGENE
NCBI Gene 71566 ENTREZGENE
PANTHER CXADR-LIKE MEMBRANE PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR44783 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/Swiss-Prot
  V-set UniProtKB/Swiss-Prot
PhenoGen Clmp PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
SMART IGc2 UniProtKB/Swiss-Prot
  IGv UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt CLMP_MOUSE UniProtKB/Swiss-Prot
  Q8C1H8_MOUSE UniProtKB/TrEMBL
  Q8R373 ENTREZGENE
  Q920S5 ENTREZGENE
UniProt Secondary Q920S5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-19 Clmp  CXADR-like membrane protein  9030425E11Rik  RIKEN cDNA 9030425E11 gene  Symbol and/or name change 5135510 APPROVED