Taf11 (TATA-box binding protein associated factor 11) - Rat Genome Database

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Gene: Taf11 (TATA-box binding protein associated factor 11) Mus musculus
Analyze
Symbol: Taf11
Name: TATA-box binding protein associated factor 11
RGD ID: 1313767
MGI Page MGI
Description: Enables DNA binding activity. Predicted to be involved in positive regulation by host of viral transcription; positive regulation of transcription initiation by RNA polymerase II; and transcription by RNA polymerase II. Located in nucleus. Is expressed in brain; genitourinary system; heart; and tail. Orthologous to human TAF11 (TATA-box binding protein associated factor 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110038O14Rik; 28kD; 28kDa; AI115401; AL024207; AW552398; PRO; PRO214; TAF; TAF(II)28; TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF2I; TAFI; TAFII-28; TAFII28; TFIID subunit p30-beta; transcription initiation factor TFIID 28 kDa subunit; transcription initiation factor TFIID subunit 11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,120,096 - 28,128,723 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,120,096 - 28,128,818 (-)EnsemblGRCm39 Ensembl
GRCm381727,901,122 - 27,909,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,901,122 - 27,909,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,038,073 - 28,044,669 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,628,717 - 27,635,313 (-)NCBIMGSCv36mm8
Celera1728,454,198 - 28,460,799 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IDA,ISO,ISS)
transcription factor TFIID complex  (IBA,ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Structural bioinformatics of the general transcription factor TFIID. Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7671812   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:14580349   PMID:14610273   PMID:14681479   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18722179   PMID:18799693   PMID:20059953   PMID:20211142   PMID:21122108   PMID:21677750   PMID:21873635   PMID:22323595  
PMID:27026076   PMID:28893950   PMID:32325033   PMID:35361962   PMID:38355793  


Genomics

Comparative Map Data
Taf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,120,096 - 28,128,723 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,120,096 - 28,128,818 (-)EnsemblGRCm39 Ensembl
GRCm381727,901,122 - 27,909,343 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,901,122 - 27,909,844 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,038,073 - 28,044,669 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,628,717 - 27,635,313 (-)NCBIMGSCv36mm8
Celera1728,454,198 - 28,460,799 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.6NCBI
TAF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38634,877,462 - 34,888,071 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl634,877,462 - 34,889,192 (-)EnsemblGRCh38hg38GRCh38
GRCh37634,845,239 - 34,855,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36634,953,533 - 34,963,797 (-)NCBINCBI36Build 36hg18NCBI36
Build 34634,953,532 - 34,963,797NCBI
Celera636,399,987 - 36,410,256 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef634,568,293 - 34,578,647 (-)NCBIHuRef
CHM1_1634,847,609 - 34,857,911 (-)NCBICHM1_1
T2T-CHM13v2.0634,700,268 - 34,710,886 (-)NCBIT2T-CHM13v2.0
Taf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,957,540 - 5,965,354 (-)NCBIGRCr8
mRatBN7.2205,955,774 - 5,963,593 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl205,955,777 - 5,961,905 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx206,668,349 - 6,674,451 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,030,147 - 6,036,247 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,509,851 - 6,515,940 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,476,648 - 7,484,417 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,476,651 - 7,482,747 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0209,678,686 - 9,686,472 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,113,417 - 6,119,513 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,113,643 - 6,119,740 (-)NCBI
Celera207,516,846 - 7,522,942 (-)NCBICelera
Cytogenetic Map20p12NCBI
Taf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,908,939 - 2,916,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554372,908,939 - 2,916,154 (-)NCBIChiLan1.0ChiLan1.0
TAF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,345,074 - 49,356,355 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,212,460 - 45,223,742 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0634,439,369 - 34,449,501 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1635,536,614 - 35,546,805 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl635,536,614 - 35,546,805 (-)Ensemblpanpan1.1panPan2
TAF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,088,203 - 4,095,300 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,088,680 - 4,094,125 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,103,479 - 4,110,574 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,424,185 - 4,431,269 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,424,195 - 4,430,094 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,084,362 - 4,091,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,165,417 - 4,172,498 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,265,434 - 4,272,535 (-)NCBIUU_Cfam_GSD_1.0
Taf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494639,674,653 - 39,687,204 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647624,271,895 - 24,285,612 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647624,272,406 - 24,285,577 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl730,799,965 - 30,811,768 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1730,799,992 - 30,811,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2735,543,524 - 35,555,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11737,230,382 - 37,241,574 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604434,793,037 - 34,803,779 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475422,463,441 - 22,471,192 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475422,463,406 - 22,471,197 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Taf11
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:389
Count of miRNA genes:195
Interacting mature miRNAs:207
Transcripts:ENSMUST00000025057, ENSMUST00000114848, ENSMUST00000155667
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse

Markers in Region
RH135859  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,235 - 27,901,534UniSTSGRCm38
MGSCv371728,038,180 - 28,038,479UniSTSGRCm37
Celera1728,454,305 - 28,454,604UniSTS
Cytogenetic Map17A3.3UniSTS
AW552398  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,557 - 27,901,699UniSTSGRCm38
MGSCv371728,038,502 - 28,038,644UniSTSGRCm37
Celera1728,454,627 - 28,454,769UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17348.15UniSTS
RH125498  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381727,901,377 - 27,901,575UniSTSGRCm38
MGSCv371728,038,322 - 28,038,520UniSTSGRCm37
Celera1728,454,447 - 28,454,645UniSTS
Cytogenetic Map17A3.3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001379368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC126040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ030498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025057   ⟹   ENSMUSP00000025057
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,120,102 - 28,126,698 (-)Ensembl
GRCm38.p6 Ensembl1727,901,128 - 27,907,724 (-)Ensembl
Ensembl Acc Id: ENSMUST00000114848   ⟹   ENSMUSP00000110498
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,120,096 - 28,128,216 (-)Ensembl
GRCm38.p6 Ensembl1727,901,122 - 27,909,242 (-)Ensembl
Ensembl Acc Id: ENSMUST00000155667
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,120,636 - 28,122,245 (-)Ensembl
GRCm38.p6 Ensembl1727,901,662 - 27,903,271 (-)Ensembl
Ensembl Acc Id: ENSMUST00000232820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,122,295 - 28,122,459 (-)Ensembl
GRCm38.p6 Ensembl1727,903,321 - 27,903,485 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,120,098 - 28,122,313 (-)Ensembl
GRCm38.p6 Ensembl1727,901,124 - 27,903,339 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233306
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,125,214 - 28,126,709 (-)Ensembl
GRCm38.p6 Ensembl1727,906,240 - 27,907,735 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233439   ⟹   ENSMUSP00000156447
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,120,100 - 28,128,818 (-)Ensembl
GRCm38.p6 Ensembl1727,901,126 - 27,909,844 (-)Ensembl
Ensembl Acc Id: ENSMUST00000233681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1728,126,783 - 28,128,113 (-)Ensembl
GRCm38.p6 Ensembl1727,907,809 - 27,909,139 (-)Ensembl
RefSeq Acc Id: NM_001379368   ⟹   NP_001366297
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026836   ⟹   NP_081112
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,096 - 28,128,216 (-)NCBI
GRCm381727,901,122 - 27,909,242 (-)NCBI
MGSCv371728,038,073 - 28,044,669 (-)RGD
Celera1728,454,198 - 28,460,799 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166634
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166635
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,100 - 28,126,718 (-)NCBI
GRCm381727,901,126 - 27,907,744 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524862   ⟹   XP_006524925
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,223 (-)NCBI
GRCm381727,901,208 - 27,909,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246588   ⟹   XP_011244890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,723 (-)NCBI
GRCm381727,901,208 - 27,909,343 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160771   ⟹   XP_036016664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160772   ⟹   XP_036016665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391728,120,182 - 28,128,222 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081112   ⟸   NM_026836
- UniProtKB: Q3UZH1 (UniProtKB/Swiss-Prot),   Q9CT98 (UniProtKB/Swiss-Prot),   Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524925   ⟸   XM_006524862
- Peptide Label: isoform X1
- UniProtKB: Q3UZH1 (UniProtKB/Swiss-Prot),   Q9CT98 (UniProtKB/Swiss-Prot),   Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011244890   ⟸   XM_011246588
- Peptide Label: isoform X1
- UniProtKB: Q3UZH1 (UniProtKB/Swiss-Prot),   Q9CT98 (UniProtKB/Swiss-Prot),   Q99JX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001366297   ⟸   NM_001379368
- UniProtKB: Q99JX1 (UniProtKB/Swiss-Prot),   Q3UZH1 (UniProtKB/Swiss-Prot),   Q9CT98 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000156447   ⟸   ENSMUST00000233439
Ensembl Acc Id: ENSMUSP00000110498   ⟸   ENSMUST00000114848
Ensembl Acc Id: ENSMUSP00000025057   ⟸   ENSMUST00000025057
RefSeq Acc Id: XP_036016665   ⟸   XM_036160772
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016664   ⟸   XM_036160771
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99JX1-F1-model_v2 AlphaFold Q99JX1 1-211 view protein structure

Promoters
RGD ID:13675314
Promoter ID:EPDNEW_M21806
Type:initiation region
Name:Taf11_1
Description:Mus musculus TATA-box binding protein associated factor 11 ,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381727,907,724 - 27,907,784EPDNEW
RGD ID:6828740
Promoter ID:MM_KWN:22826
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour
Transcripts:OTTMUST00000059157
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,040,191 - 28,040,691 (-)MPROMDB
RGD ID:6828742
Promoter ID:MM_KWN:22827
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:UC008BPU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,044,464 - 28,044,964 (-)MPROMDB
RGD ID:6827830
Promoter ID:MM_KWN:22828
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000097358,   ENSMUST00000114848,   UC008BPV.1,   UC008BPW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361728,046,026 - 28,046,552 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916026 AgrOrtholog
Ensembl Genes ENSMUSG00000024218 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025057 ENTREZGENE
  ENSMUST00000025057.5 UniProtKB/Swiss-Prot
  ENSMUST00000114848 ENTREZGENE
  ENSMUST00000114848.8 UniProtKB/Swiss-Prot
  ENSMUST00000233439.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  TAF11-like UniProtKB/Swiss-Prot
  TAFII28 UniProtKB/Swiss-Prot
KEGG Report mmu:68776 UniProtKB/Swiss-Prot
MGD MGI:1916026 ENTREZGENE
NCBI Gene 68776 ENTREZGENE
PANTHER PTHR13218 UniProtKB/Swiss-Prot
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11 UniProtKB/Swiss-Prot
Pfam TAFII28 UniProtKB/Swiss-Prot
PhenoGen Taf11 PhenoGen
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt A0A3B2WCC4_MOUSE UniProtKB/TrEMBL
  Q3UZH1 ENTREZGENE
  Q99JX1 ENTREZGENE
  Q9CT98 ENTREZGENE
  TAF11_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UZH1 UniProtKB/Swiss-Prot
  Q9CT98 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Taf11  TATA-box binding protein associated factor 11    TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor  Symbol and/or name change 5135510 APPROVED