Rag2 (recombination activating gene 2)

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Gene: Rag2 (recombination activating gene 2) Mus musculus

Analyze

Symbol:

Rag2

Name:

recombination activating gene 2

RGD ID:

1313707

MGI Page

MGI

Description:

Enables several functions, including phosphatidylinositol phosphate binding activity; phosphatidylinositol-3,4-bisphosphate binding activity; and zinc ion binding activity. Involved in T cell differentiation in thymus; V(D)J recombination; and pre-B cell allelic exclusion. Acts upstream of or within several processes, including B cell homeostatic proliferation; lymphocyte differentiation; and positive regulation of organ growth. Predicted to be located in nucleoplasm. Predicted to be part of DNA recombinase complex. Is expressed in gut; hemolymphoid system; and liver. Used to study Omenn syndrome and severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive. Human ortholog(s) of this gene implicated in Omenn syndrome; combined cellular and humoral immune defects with granulomas; severe combined immunodeficiency; and severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive. Orthologous to human RAG2 (recombination activating 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Rag; Rag-2; recombinase activating gene 2; recombination activating protein 2; V(D)J recombination-activating protein 2

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RAG2 (recombination activating 2)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Rag2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rag2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RAG2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RAG2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rag2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RAG2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RAG2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rag2 (recombination activating 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Rag2 (recombination activating 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RAG2 (recombination activating 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rag2 (recombination activating gene 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	101,455,057 - 101,462,873 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	101,455,063 - 101,462,874 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	101,624,712 - 101,632,528 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	101,624,718 - 101,632,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	101,464,905 - 101,472,685 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	101,425,587 - 101,433,367 (+)	NCBI		MGSCv36	mm8
Celera	2	102,849,742 - 102,857,519 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	53.87	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

combined cellular and humoral immune defects with granulomas (ISO)

common variable immunodeficiency (ISO)

Eosinophilia (ISO)

Experimental Arthritis (ISO)

genetic disease (ISO)

histiocytic sarcoma (ISO)

Immunodeficiency 104 (ISO)

intellectual disability (ISO)

Metaplasia (ISO)

non-alcoholic fatty liver disease (ISO)

Omenn syndrome (IAGP,ISO)

recombinase activating gene 2 deficiency (ISO)

severe combined immunodeficiency (ISO)

severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-positive (IAGP,ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-butoxyethanol (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

bisphenol A (EXP)

bromodichloromethane (EXP)

copper atom (ISO)

copper(0) (ISO)

cypermethrin (EXP)

lead diacetate (EXP)

lipopolysaccharide (EXP)

paracetamol (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell differentiation (IMP)

B cell homeostatic proliferation (IMP)

B cell lineage commitment (IMP)

chromatin organization (IEA)

defense response to bacterium (IGI)

DN2 thymocyte differentiation (IMP)

DNA recombination (TAS)

mature B cell differentiation involved in immune response (ISO)

negative regulation of T cell differentiation in thymus (ISO)

organ growth (IGI,IMP)

positive regulation of organ growth (IGI,IMP)

pre-B cell allelic exclusion (IMP)

T cell differentiation (IMP)

T cell differentiation in thymus (IMP)

T cell lineage commitment (IMP)

V(D)J recombination (IBA,IGI,IMP)

Cellular Component

DNA recombinase complex (IBA)

nucleoplasm (TAS)

nucleus (IC)

Molecular Function

chromatin binding (IDA)

DNA binding (IEA)

metal ion binding (IEA)

methylated histone binding (IDA)

phosphatidylinositol binding (IDA)

phosphatidylinositol-3,4,5-trisphosphate binding (IDA)

phosphatidylinositol-3,4-bisphosphate binding (IDA)

phosphatidylinositol-3,5-bisphosphate binding (IDA)

phosphatidylinositol-4,5-bisphosphate binding (IDA)

protein binding (IPI)

sequence-specific DNA binding (IBA)

zinc ion binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

primary immunodeficiency pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal aorta morphology (IAGP)

abnormal B cell activation (IAGP)

abnormal B cell differentiation (IAGP)

abnormal B cell morphology (IAGP)

abnormal B cell number (IAGP)

abnormal B cell physiology (IAGP)

abnormal blood cell morphology/development (IAGP)

abnormal bone marrow cell physiology (IAGP)

abnormal CD4-positive T cell differentiation (IAGP)

abnormal CD4-positive, alpha beta T cell morphology (IAGP)

abnormal CD4-positive, alpha-beta T cell physiology (IAGP)

abnormal CD8-positive, alpha beta T cell morphology (IAGP)

abnormal CD8-positive, alpha-beta T cell physiology (IAGP)

abnormal chemokine secretion (IAGP)

abnormal chromosome morphology (IAGP)

abnormal circulating interleukin level (IAGP)

abnormal class switch recombination (IAGP)

abnormal cytokine secretion (IAGP)

abnormal cytotoxic T cell physiology (IAGP)

abnormal digestive system morphology (IAGP)

abnormal digestive system physiology (IAGP)

abnormal double-negative T cell morphology (IAGP)

abnormal double-positive T cell morphology (IAGP)

abnormal effector T cell morphology (IAGP)

abnormal eosinophil physiology (IAGP)

abnormal gamma-delta T cell differentiation (IAGP)

abnormal humoral immune response (IEA)

abnormal immune system cell morphology (IAGP)

abnormal immune system organ morphology (IAGP)

abnormal immune system physiology (IAGP)

abnormal immunoglobulin V(D)J recombination (IAGP)

abnormal interferon secretion (IAGP)

abnormal interleukin secretion (IAGP)

abnormal intestinal epithelium morphology (IAGP)

abnormal intestinal goblet cell morphology (IAGP)

abnormal intestinal mucosa morphology (IAGP)

abnormal keratinocyte differentiation (IAGP)

abnormal large intestine crypts of Lieberkuhn morphology (IAGP)

abnormal lymph node morphology (IAGP)

abnormal lymphocyte physiology (IAGP)

abnormal lymphopoiesis (IAGP)

abnormal macrophage physiology (IAGP)

abnormal Peyer's patch morphology (IAGP)

abnormal positive T cell selection (IAGP)

abnormal pre-B cell morphology (IAGP)

abnormal response to transplant (IAGP)

abnormal skin morphology (IAGP)

abnormal spleen morphology (IAGP)

abnormal stomach mucosa morphology (IAGP)

abnormal susceptibility to parasitic infection (IAGP)

abnormal T cell activation (IAGP)

abnormal T cell differentiation (IAGP)

abnormal T cell morphology (IAGP)

abnormal T cell number (IAGP)

abnormal T cell physiology (IAGP)

abnormal T cell proliferation (IAGP)

abnormal T cell receptor delta chain V(D)J recombination (IAGP)

abnormal T cell receptor V(D)J recombination (IAGP)

abnormal T-helper 1 physiology (IAGP)

abnormal thymocyte activation (IAGP)

abnormal thymus cell ratio (IAGP)

abnormal thymus morphology (IAGP)

abnormal tumor morphology (IAGP)

absent B cells (IAGP)

absent CD4-positive, alpha-beta T cells (IAGP)

absent CD8-positive, alpha-beta T cells (IAGP)

absent gamma-delta T cells (IAGP)

absent Hassall's corpuscle (IAGP)

absent immature B cells (IAGP)

absent mature B cells (IAGP)

absent NK cells (IAGP)

absent peripheral lymph nodes (IAGP)

absent Peyer's patches (IAGP)

absent pre-B cells (IAGP)

absent T cells (IAGP)

alopecia (IAGP)

anemia (IAGP)

aneuploidy (IAGP)

arrested B cell differentiation (IAGP)

arrested T cell differentiation (IAGP)

autoimmune response (IAGP)

cachexia (IAGP)

CNS inflammation (IAGP)

colitis (IAGP)

decreased B cell number (IAGP)

decreased body size (IAGP)

decreased body weight (IAGP)

decreased bone marrow cell number (IAGP)

decreased CD4-positive, alpha-beta T cell number (IAGP)

decreased CD8-positive, alpha-beta T cell number (IAGP)

decreased circulating cholesterol level (IAGP)

decreased circulating HDL cholesterol level (IAGP)

decreased colon length (IAGP)

decreased double-negative T cell number (IAGP)

decreased double-positive T cell number (IAGP)

decreased follicular B cell number (IAGP)

decreased hepatocyte proliferation (IAGP)

decreased IgA level (IAGP)

decreased IgG level (IAGP)

decreased IgM level (IAGP)

decreased immature B cell number (IAGP)

decreased interleukin-17 secretion (IAGP)

decreased interleukin-2 secretion (IAGP)

decreased lymphocyte cell number (IAGP)

decreased marginal zone B cell number (IAGP)

decreased mature B cell number (IAGP)

decreased metastatic potential (IAGP)

decreased monocyte cell number (IAGP)

decreased NK cell number (IAGP)

decreased NK T cell number (IAGP)

decreased pre-B cell number (IAGP)

decreased pro-B cell number (IAGP)

decreased single-positive T cell number (IAGP)

decreased spleen white pulp amount (IAGP)

decreased susceptibility to bacterial infection (IAGP)

decreased susceptibility to bacterial infection induced morbidity/mortality (IAGP)

decreased susceptibility to graft versus host disease (IAGP)

decreased susceptibility to parasitic infection (IAGP)

decreased susceptibility to type IV hypersensitivity reaction (IAGP)

decreased T cell number (IAGP)

decreased T cell proliferation (IAGP)

decreased thymocyte number (IAGP)

decreased tumor growth/size (IAGP)

decreased tumor incidence (IAGP)

demyelination (IAGP)

dermatitis (IAGP)

diarrhea (IAGP)

enlarged mesenteric lymph nodes (IAGP)

epidermal hyperplasia (IAGP)

erythroderma (IAGP)

hindlimb paralysis (IAGP)

hunched posture (IAGP)

impaired liver regeneration (IAGP)

increased activated T cell number (IAGP)

increased B cell derived lymphoma incidence (IAGP)

increased CD4-positive, alpha-beta T cell number (IAGP)

increased CD8-positive, alpha-beta T cell number (IAGP)

increased circulating glucose level (IAGP)

increased DN3 thymocyte number (IAGP)

increased double-negative T cell number (IAGP)

increased double-positive T cell number (IAGP)

increased eosinophil cell number (IAGP)

increased gastrointestinal stromal tumor incidence (IAGP)

increased gastrointestinal tumor incidence (IAGP)

increased granulocyte number (IAGP)

increased hepatocellular carcinoma incidence (IAGP)

increased immature B cell number (IAGP)

increased lymphoma incidence (IAGP)

increased macrophage cell number (IAGP)

increased mammary adenocarcinoma incidence (IAGP)

increased natural killer cell mediated cytotoxicity (IAGP)

increased plasma cell number (IAGP)

increased sarcoma incidence (IAGP)

increased sensitivity to induced morbidity/mortality (IAGP)

increased susceptibility to bacterial infection (IAGP)

increased susceptibility to bacterial infection induced morbidity/mortality (IAGP)

increased susceptibility to experimental autoimmune encephalomyelitis (IAGP)

increased susceptibility to infection (IAGP)

increased susceptibility to Retroviridae infection (IAGP)

increased T cell derived lymphoma incidence (IAGP)

increased T cell proliferation (IAGP)

increased T-helper 17 cell number (IAGP)

increased thymocyte number (IAGP)

increased thymus tumor incidence (IAGP)

increased tumor necrosis factor secretion (IAGP)

increased uterus weight (IAGP)

large intestinal inflammation (IAGP)

lung inflammation (IAGP)

lymph node hypoplasia (IAGP)

no abnormal phenotype detected (IAGP)

osteoarthritis (IAGP)

perinatal lethality, complete penetrance (IAGP)

premature death (IAGP)

rectal hemorrhage (IAGP)

rectal prolapse (IAGP)

small cervical lymph nodes (IAGP)

small inguinal lymph nodes (IAGP)

small lymph nodes (IAGP)

small spleen (IAGP)

spleen hypoplasia (IAGP)

spontaneous chromosome breakage (IAGP)

thrombocytopenia (IAGP)

thymus hyperplasia (IAGP)

thymus hypoplasia (IAGP)

thyroid gland inflammation (IAGP)

weight loss (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	MGD IEA	MGD IEA
3.	Sprague Dawley Rag2-Null Rats Created from Engineered Spermatogonial Stem Cells Are Immunodeficient and Permissive to Human Xenografts.	Noto FK, etal., Mol Cancer Ther. 2018 Nov;17(11):2481-2489. doi: 10.1158/1535-7163.MCT-18-0156. Epub 2018 Sep 11.
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	Readout of epigenetic modifications.	Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	RAG mutations in human B cell-negative SCID.	Schwarz K, etal., Science. 1996 Oct 4;274(5284):97-9.
11.	Partial V(D)J recombination activity leads to Omenn syndrome.	Villa A, etal., Cell. 1998 May 29;93(5):885-96.

Additional References at PubMed

PMID:1468649	PMID:1492366	PMID:1547487	PMID:1547488	PMID:1590991	PMID:1661315	PMID:1735560	PMID:1986864	PMID:2023940	PMID:2360047	PMID:2598259	PMID:7515811
PMID:7526894	PMID:7533644	PMID:7534201	PMID:7552995	PMID:7566176	PMID:7584150	PMID:7595226	PMID:7621864	PMID:7648394	PMID:7750469	PMID:7830770	PMID:7869035
PMID:7898493	PMID:7926786	PMID:7931082	PMID:7947468	PMID:7981152	PMID:7989751	PMID:8011215	PMID:8046237	PMID:8093609	PMID:8146183	PMID:8156589	PMID:8208603
PMID:8208604	PMID:8284210	PMID:8321196	PMID:8430336	PMID:8568235	PMID:8633210	PMID:8662087	PMID:8666950	PMID:8746561	PMID:8769647	PMID:8777717	PMID:8788039
PMID:8790395	PMID:8816481	PMID:8885865	PMID:8885866	PMID:8920866	PMID:8934654	PMID:8953043	PMID:8986717	PMID:9036966	PMID:9052834	PMID:9104811	PMID:9126963
PMID:9130655	PMID:9164958	PMID:9208843	PMID:9218618	PMID:9252127	PMID:9285410	PMID:9294126	PMID:9294142	PMID:9341770	PMID:9362527	PMID:9414161	PMID:9451590
PMID:9486849	PMID:9536544	PMID:9551960	PMID:9576620	PMID:9580246	PMID:9584189	PMID:9619371	PMID:9694657	PMID:9697838	PMID:9698115	PMID:9720655	PMID:9799844
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PMID:10616908	PMID:10623805	PMID:10636478	PMID:10648413	PMID:10706709	PMID:10725718	PMID:10799872	PMID:10820381	PMID:10841564	PMID:10843678	PMID:10850719	PMID:10889161
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PMID:11163198	PMID:11172022	PMID:11174205	PMID:11196687	PMID:11207259	PMID:11214319	PMID:11217851	PMID:11239447	PMID:11282988	PMID:11298341	PMID:11323675	PMID:11397712
PMID:11441087	PMID:11465103	PMID:11507212	PMID:11536157	PMID:11559791	PMID:11560990	PMID:11591775	PMID:11602643	PMID:11668338	PMID:11696590	PMID:11702064	PMID:11745331
PMID:11745356	PMID:11745397	PMID:11751756	PMID:11756686	PMID:11779512	PMID:11781367	PMID:11801645	PMID:11854357	PMID:11867223	PMID:11867763	PMID:11869689	PMID:11870633
PMID:11884426	PMID:11911822	PMID:11932925	PMID:11940674	PMID:11980719	PMID:11983177	PMID:11994447	PMID:12042809	PMID:12044781	PMID:12049723	PMID:12067757	PMID:12070778
PMID:12097391	PMID:12098702	PMID:12100900	PMID:12110179	PMID:12140768	PMID:12145216	PMID:12154124	PMID:12186839	PMID:12205088	PMID:12218095	PMID:12234922	PMID:12354381
PMID:12370259	PMID:12378523	PMID:12393735	PMID:12393742	PMID:12432095	PMID:12433370	PMID:12438215	PMID:12438645	PMID:12446574	PMID:12466851	PMID:12477932	PMID:12527407
PMID:12531919	PMID:12538669	PMID:12547727	PMID:12559174	PMID:12586624	PMID:12598649	PMID:12606021	PMID:12618483	PMID:12645934	PMID:12646651	PMID:12695566	PMID:12755332
PMID:12759452	PMID:12861017	PMID:12871640	PMID:12871643	PMID:12884298	PMID:12946661	PMID:14522933	PMID:14583233	PMID:14595002	PMID:14624253	PMID:14706337	PMID:14707073
PMID:14766966	PMID:14769852	PMID:14981113	PMID:14999286	PMID:15001705	PMID:15021880	PMID:15057750	PMID:15064419	PMID:15069016	PMID:15128797	PMID:15128847	PMID:15141078
PMID:15146180	PMID:15150080	PMID:15197172	PMID:15210748	PMID:15235129	PMID:15238603	PMID:15265888	PMID:15300245	PMID:15308325	PMID:15314076	PMID:15319293	PMID:15322152
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PMID:15640803	PMID:15661875	PMID:15684084	PMID:15692099	PMID:15705807	PMID:15713121	PMID:15767371	PMID:15767447	PMID:15778379	PMID:15806105	PMID:15814691	PMID:15827121
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PMID:15972970	PMID:16002694	PMID:16002715	PMID:16078277	PMID:16087873	PMID:16111637	PMID:16111638	PMID:16141072	PMID:16141073	PMID:16163674	PMID:16172258	PMID:16172260
PMID:16177059	PMID:16177324	PMID:16186486	PMID:16210623	PMID:16230370	PMID:16257179	PMID:16292344	PMID:16321440	PMID:16365147	PMID:16365400	PMID:16397239	PMID:16410448
PMID:16424192	PMID:16455977	PMID:16456003	PMID:16456545	PMID:16505142	PMID:16513945	PMID:16543065	PMID:16569676	PMID:16611648	PMID:16617337	PMID:16621996	PMID:16651521
PMID:16670294	PMID:16709841	PMID:16709842	PMID:16710475	PMID:16818779	PMID:16818782	PMID:16819554	PMID:16864660	PMID:16888019	PMID:16936730	PMID:16973388	PMID:16973390
PMID:17002560	PMID:17038503	PMID:17045823	PMID:17081782	PMID:17082625	PMID:17182559	PMID:17182565	PMID:17192390	PMID:17198880	PMID:17202252	PMID:17208926	PMID:17210914
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PMID:19536265	PMID:19556863	PMID:19559408	PMID:19581407	PMID:19584867	PMID:19587764	PMID:19593768	PMID:19597497	PMID:19620292	PMID:19620627	PMID:19625655	PMID:19628815
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PMID:19808258	PMID:19820166	PMID:19833887	PMID:19843942	PMID:19843944	PMID:19923469	PMID:19933849	PMID:19946273	PMID:19949104	PMID:20023630	PMID:20038645	PMID:20045355
PMID:20056718	PMID:20083652	PMID:20133794	PMID:20142360	PMID:20181882	PMID:20190135	PMID:20207995	PMID:20231378	PMID:20234091	PMID:20308599	PMID:20332212	PMID:20360383
PMID:20398922	PMID:20400700	PMID:20435935	PMID:20439914	PMID:20454452	PMID:20457870	PMID:20483732	PMID:20483751	PMID:20488796	PMID:20497957	PMID:20498019	PMID:20498059
PMID:20526343	PMID:20534524	PMID:20538758	PMID:20547828	PMID:20592278	PMID:20610645	PMID:20639482	PMID:20639491	PMID:20643337	PMID:20643338	PMID:20651252	PMID:20660347
PMID:20667098	PMID:20690177	PMID:20699475	PMID:20705244	PMID:20720211	PMID:20817865	PMID:20844195	PMID:20844537	PMID:20847202	PMID:20870175	PMID:20921278	PMID:20921388
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PMID:21474713	PMID:21480230	PMID:21482794	PMID:21512139	PMID:21515792	PMID:21518784	PMID:21525154	PMID:21536497	PMID:21552207	PMID:21576823	PMID:21593165	PMID:21593192
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PMID:21677130	PMID:21683627	PMID:21690328	PMID:21693708	PMID:21742970	PMID:21746917	PMID:21746927	PMID:21750145	PMID:21768353	PMID:21775286	PMID:21788406	PMID:21788504
PMID:21788509	PMID:21791433	PMID:21808010	PMID:21828131	PMID:21847099	PMID:21867927	PMID:21867928	PMID:21873191	PMID:21873193	PMID:21873635	PMID:21876033	PMID:21878673
PMID:21908434	PMID:21909092	PMID:21909113	PMID:21930962	PMID:21956668	PMID:21982154	PMID:21983833	PMID:21993848	PMID:21998213	PMID:22013038	PMID:22064481	PMID:22068235
PMID:22089030	PMID:22101768	PMID:22105999	PMID:22116827	PMID:22119487	PMID:22124110	PMID:22131335	PMID:22158124	PMID:22185785	PMID:22216008	PMID:22223661	PMID:22231304
PMID:22251703	PMID:22264274	PMID:22267218	PMID:22267219	PMID:22284419	PMID:22287717	PMID:22312128	PMID:22323543	PMID:22326580	PMID:22328321	PMID:22331103	PMID:22331917
PMID:22333949	PMID:22355103	PMID:22366456	PMID:22374983	PMID:22499851	PMID:22504639	PMID:22520852	PMID:22543263	PMID:22544394	PMID:22544395	PMID:22546855	PMID:22566629
PMID:22581861	PMID:22611152	PMID:22611241	PMID:22613798	PMID:22653054	PMID:22665378	PMID:22675442	PMID:22689960	PMID:22709691	PMID:22723555	PMID:22726954	PMID:22727490
PMID:22727957	PMID:22728771	PMID:22737248	PMID:22770220	PMID:22778389	PMID:22789540	PMID:22844110	PMID:22851710	PMID:22897848	PMID:22927549	PMID:22937164	PMID:22942422
PMID:22949502	PMID:22951832	PMID:22960654	PMID:22972921	PMID:22984564	PMID:22993203	PMID:23006848	PMID:23034281	PMID:23041566	PMID:23063332	PMID:23065717	PMID:23071255
PMID:23109711	PMID:23110142	PMID:23125414	PMID:23159437	PMID:23160153	PMID:23169622	PMID:23203926	PMID:23209328	PMID:23225163	PMID:23248258	PMID:23263555	PMID:23264048
PMID:23267015	PMID:23275602	PMID:23293079	PMID:23300554	PMID:23300712	PMID:23315074	PMID:23319736	PMID:23322377	PMID:23325802	PMID:23326231	PMID:23345426	PMID:23345428
PMID:23345431	PMID:23354049	PMID:23384999	PMID:23420878	PMID:23453632	PMID:23453796	PMID:23454765	PMID:23455676	PMID:23469004	PMID:23475219	PMID:23475576	PMID:23479229
PMID:23481390	PMID:23499491	PMID:23504518	PMID:23509324	PMID:23530145	PMID:23545300	PMID:23547117	PMID:23582326	PMID:23585480	PMID:23596309	PMID:23603794	PMID:23661644
PMID:23671208	PMID:23684987	PMID:23687305	PMID:23690480	PMID:23708119	PMID:23715173	PMID:23733880	PMID:23740949	PMID:23741395	PMID:23756229	PMID:23776508	PMID:23785280
PMID:23794631	PMID:23794633	PMID:23810766	PMID:23820270	PMID:23824904	PMID:23825312	PMID:23851685	PMID:23851691	PMID:23872678	PMID:23874205	PMID:23897826	PMID:23900513
PMID:23908463	PMID:23918988	PMID:23926303	PMID:23933255	PMID:23940740	PMID:23948297	PMID:23956422	PMID:23956424	PMID:23959802	PMID:23960231	PMID:23966300	PMID:23973221
PMID:23973223	PMID:23975040	PMID:23994475	PMID:24002064	PMID:24007532	PMID:24021673	PMID:24037181	PMID:24040101	PMID:24043779	PMID:24052573	PMID:24058178	PMID:24098455
PMID:24105635	PMID:24138883	PMID:24150244	PMID:24152792	PMID:24177426	PMID:24211274	PMID:24218622	PMID:24222714	PMID:24223822	PMID:24239285	PMID:24244446	PMID:24249704
PMID:24277151	PMID:24291244	PMID:24310610	PMID:24315996	PMID:24316973	PMID:24324159	PMID:24336249	PMID:24362892	PMID:24391507	PMID:24418260	PMID:24419270	PMID:24442439
PMID:24458645	PMID:24459675	PMID:24469537	PMID:24474796	PMID:24497535	PMID:24509509	PMID:24509713	PMID:24516120	PMID:24516197	PMID:24518294	PMID:24523322	PMID:24531377
PMID:24550298	PMID:24577131	PMID:24590056	PMID:24625929	PMID:24631153	PMID:24631157	PMID:24633226	PMID:24633240	PMID:24644282	PMID:24657994	PMID:24684957	PMID:24706811
PMID:24709804	PMID:24770649	PMID:24778318	PMID:24785297	PMID:24786772	PMID:24792912	PMID:24797128	PMID:24828041	PMID:24844667	PMID:24888589	PMID:24927559	PMID:24944101
PMID:24944193	PMID:24958849	PMID:24967682	PMID:24983319	PMID:24990882	PMID:25070355	PMID:25111180	PMID:25126792	PMID:25139353	PMID:25143363	PMID:25143585	PMID:25182170
PMID:25200027	PMID:25204502	PMID:25220211	PMID:25240383	PMID:25243909	PMID:25257108	PMID:25259923	PMID:25310240	PMID:25333658	PMID:25363763	PMID:25398911	PMID:25426555
PMID:25436971	PMID:25470037	PMID:25470051	PMID:25485946	PMID:25535246	PMID:25543141	PMID:25561180	PMID:25590474	PMID:25599993	PMID:25657250	PMID:25676158	PMID:25683713
PMID:25707801	PMID:25727904	PMID:25732600	PMID:25733518	PMID:25745066	PMID:25747674	PMID:25751061	PMID:25759025	PMID:25760441	PMID:25763578	PMID:25769611	PMID:25769613
PMID:25770130	PMID:25774502	PMID:25818301	PMID:25825216	PMID:25831496	PMID:25833958	PMID:25838284	PMID:25847946	PMID:25870199	PMID:25902484	PMID:25903130	PMID:25939026
PMID:25953241	PMID:25959818	PMID:25964370	PMID:25964371	PMID:25968334	PMID:25970248	PMID:25979421	PMID:26004187	PMID:26039259	PMID:26056232	PMID:26056274	PMID:26056289
PMID:26056302	PMID:26072395	PMID:26092469	PMID:26099023	PMID:26113085	PMID:26114424	PMID:26146082	PMID:26165721	PMID:26214742	PMID:26223192	PMID:26223655	PMID:26234156
PMID:26279296	PMID:26280998	PMID:26301566	PMID:26301814	PMID:26302788	PMID:26303526	PMID:26320660	PMID:26321222	PMID:26349655	PMID:26365182	PMID:26384430	PMID:26384565
PMID:26410628	PMID:26417005	PMID:26417101	PMID:26447219	PMID:26489460	PMID:26581993	PMID:26595887	PMID:26674251	PMID:26678340	PMID:26692406	PMID:26744522	PMID:26750312
PMID:26752157	PMID:26752376	PMID:26753883	PMID:26755706	PMID:26787820	PMID:26809474	PMID:26833222	PMID:26847546	PMID:26869716	PMID:26872418	PMID:26872694	PMID:26880576
PMID:26884167	PMID:26912654	PMID:26926994	PMID:27000947	PMID:27015456	PMID:27050757	PMID:27056670	PMID:27064374	PMID:27099312	PMID:27128797	PMID:27130185	PMID:27158907
PMID:27183623	PMID:27197263	PMID:27261277	PMID:27354269	PMID:27396388	PMID:27421701	PMID:27421704	PMID:27441847	PMID:27477910	PMID:27478039	PMID:27496731	PMID:27496734
PMID:27521341	PMID:27533013	PMID:27535619	PMID:27545889	PMID:27548433	PMID:27565347	PMID:27581357	PMID:27601131	PMID:27621418	PMID:27643438	PMID:27699213	PMID:27716507
PMID:27723723	PMID:27731324	PMID:27737881	PMID:27752043	PMID:27753080	PMID:27905395	PMID:27925658	PMID:27929373	PMID:27940915	PMID:28069805	PMID:28077418	PMID:28114290
PMID:28137874	PMID:28179379	PMID:28190771	PMID:28198364	PMID:28216546	PMID:28264908	PMID:28373291	PMID:28399128	PMID:28405615	PMID:28426964	PMID:28445461	PMID:28455312
PMID:28486109	PMID:28538180	PMID:28556921	PMID:28561023	PMID:28576977	PMID:28585539	PMID:28589929	PMID:28591585	PMID:28606987	PMID:28634350	PMID:28658614	PMID:28686677
PMID:28698286	PMID:28730605	PMID:28737488	PMID:28747424	PMID:28768188	PMID:28783658	PMID:28783663	PMID:28783664	PMID:28792532	PMID:28833076	PMID:28869974	PMID:28888925
PMID:28895840	PMID:28916727	PMID:28923960	PMID:28978470	PMID:29030217	PMID:29056343	PMID:29069606	PMID:29070650	PMID:29150564	PMID:29166590	PMID:29176980	PMID:29186688
PMID:29202478	PMID:29206103	PMID:29249464	PMID:29281837	PMID:29287229	PMID:29321275	PMID:29321277	PMID:29326266	PMID:29346764	PMID:29358707	PMID:29364865	PMID:29425339
PMID:29429633	PMID:29440228	PMID:29444238	PMID:29467297	PMID:29496881	PMID:29556000	PMID:29559473	PMID:29588348	PMID:29594927	PMID:29614705	PMID:29624673	PMID:29625895
PMID:29628308	PMID:29654210	PMID:29719266	PMID:29720662	PMID:29725003	PMID:29725010	PMID:29728511	PMID:29745988	PMID:29754819	PMID:29760281	PMID:29773802	PMID:29794015
PMID:29858012	PMID:29861285	PMID:29884702	PMID:29891681	PMID:29903733	PMID:29907525	PMID:29915296	PMID:29925696	PMID:29975766	PMID:29980437	PMID:30007439	PMID:30049881
PMID:30065364	PMID:30106373	PMID:30134157	PMID:30134172	PMID:30158115	PMID:30187863	PMID:30190287	PMID:30209334	PMID:30228258	PMID:30291028	PMID:30337928	PMID:30352428
PMID:30498131	PMID:30504915	PMID:30552020	PMID:30566868	PMID:30584641	PMID:30590049	PMID:30611611	PMID:30635578	PMID:30635649	PMID:30664659	PMID:30671102	PMID:30674536
PMID:30692571	PMID:30720218	PMID:30753823	PMID:30755603	PMID:30755607	PMID:30765463	PMID:30778242	PMID:30816678	PMID:30872621	PMID:30877169	PMID:30888052	PMID:30889382
PMID:30894377	PMID:30918005	PMID:30936486	PMID:30958798	PMID:30977112	PMID:30978356	PMID:30996000	PMID:31027998	PMID:31075127	PMID:31092921	PMID:31103381	PMID:31132747
PMID:31152091	PMID:31167132	PMID:31235962	PMID:31269440	PMID:31292548	PMID:31328158	PMID:31341106	PMID:31353223	PMID:31375314	PMID:31378988	PMID:31515941	PMID:31534009
PMID:31534216	PMID:31537642	PMID:31546615	PMID:31553907	PMID:31562212	PMID:31591571	PMID:31604686	PMID:31609965	PMID:31628054	PMID:31672934	PMID:31722202	PMID:31751318
PMID:31810881	PMID:31811168	PMID:31819031	PMID:31825834	PMID:31857584	PMID:31875552	PMID:31875557	PMID:31901074	PMID:31924648	PMID:31924652	PMID:31982409	PMID:32015552
PMID:32015553	PMID:32075728	PMID:32076265	PMID:32081131	PMID:32083332	PMID:32101749	PMID:32130902	PMID:32130954	PMID:32134744	PMID:32145062	PMID:32191636	PMID:32205883
PMID:32289261	PMID:32325033	PMID:32363890	PMID:32381589	PMID:32393513	PMID:32424367	PMID:32445619	PMID:32513716	PMID:32522871	PMID:32610127	PMID:32632165	PMID:32640223
PMID:32655569	PMID:32699230	PMID:32733483	PMID:32738204	PMID:32807943	PMID:32839608	PMID:32853367	PMID:32910505	PMID:32938796	PMID:32973765	PMID:32997686	PMID:33042110
PMID:33051000	PMID:33055428	PMID:33097708	PMID:33104171	PMID:33119032	PMID:33125370	PMID:33165593	PMID:33193309	PMID:33255175	PMID:33305354	PMID:33338425	PMID:33398181
PMID:33442057	PMID:33497603	PMID:33508229	PMID:33536623	PMID:33567282	PMID:33657395	PMID:33724364	PMID:33771995	PMID:33859647	PMID:33910010	PMID:33928261	PMID:33929319
PMID:33930309	PMID:33979619	PMID:34009123	PMID:34010296	PMID:34126085	PMID:34171309	PMID:34206229	PMID:34242269	PMID:34289373	PMID:34298846	PMID:34326208	PMID:34358448
PMID:34429328	PMID:34433045	PMID:34437840	PMID:34504008	PMID:34531874	PMID:34551300	PMID:34582748	PMID:34736262	PMID:34772950	PMID:34867985	PMID:34877502	PMID:34879221
PMID:34919144	PMID:35064205	PMID:35075279	PMID:35082160	PMID:35090595	PMID:35145162	PMID:35168003	PMID:35172142	PMID:35188458	PMID:35290801	PMID:35296093	PMID:35296858
PMID:35357432	PMID:35443168	PMID:35500335	PMID:35587733	PMID:35603175	PMID:35637731	PMID:35704588	PMID:35705052	PMID:35709757	PMID:35732131	PMID:35752300	PMID:35776543
PMID:35845169	PMID:35874918	PMID:35908044	PMID:36044899	PMID:36078047	PMID:36266363	PMID:36270284	PMID:36481357

Genomics

Comparative Map Data

Rag2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	101,455,057 - 101,462,873 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	101,455,063 - 101,462,874 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	101,624,712 - 101,632,528 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	101,624,718 - 101,632,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	101,464,905 - 101,472,685 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	101,425,587 - 101,433,367 (+)	NCBI		MGSCv36	mm8
Celera	2	102,849,742 - 102,857,519 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	53.87	NCBI

RAG2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	36,590,996 - 36,598,236 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	11	36,575,574 - 36,598,279 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	36,613,493 - 36,619,786 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	36,570,069 - 36,576,388 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	36,765,924 - 36,772,260 (-)	NCBI		Celera
Cytogenetic Map	11	p12	NCBI
HuRef	11	36,316,277 - 36,322,614 (-)	NCBI		HuRef
CHM1_1	11	36,612,179 - 36,618,515 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	36,735,116 - 36,741,410 (-)	NCBI		T2T-CHM13v2.0

Rag2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	87,902,373 - 87,910,227 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	87,902,238 - 87,911,066 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	91,393,248 - 91,401,103 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	99,992,269 - 100,000,128 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	97,824,520 - 97,832,368 (+)	NCBI	Rnor_WKY
Rnor_6.0	3	91,191,837 - 91,200,134 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	91,191,837 - 91,200,134 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	97,851,318 - 97,859,615 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	86,764,810 - 86,773,438 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	86,661,236 - 86,668,153 (+)	NCBI
Celera	3	87,008,586 - 87,016,420 (+)	NCBI		Celera
Cytogenetic Map	3	q31	NCBI

Rag2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	9,867,307 - 9,869,732 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	9,867,307 - 9,869,732 (+)	NCBI	ChiLan1.0	ChiLan1.0

RAG2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	11	36,431,067 - 36,437,390 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	36,431,703 - 36,433,286 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	11	36,558,419 - 36,564,997 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RAG2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	31,614,143 - 31,621,489 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	31,618,481 - 31,620,064 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	31,225,259 - 31,228,771 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	32,228,286 - 32,231,796 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	32,228,787 - 32,230,370 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	31,798,300 - 31,801,806 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	31,382,649 - 31,386,158 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	32,019,854 - 32,023,367 (+)	NCBI		UU_Cfam_GSD_1.0

Rag2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	28,680,736 - 28,683,548 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	1,801,391 - 1,807,431 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936533	1,801,207 - 1,807,431 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAG2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	24,547,644 - 24,558,403 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	24,547,605 - 24,553,944 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	26,716,416 - 26,717,999 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAG2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	28,645,175 - 28,653,823 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	28,649,930 - 28,651,513 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	125,790,092 - 125,792,520 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rag2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	10,678,359 - 10,680,132 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	10,678,547 - 10,680,130 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	512
Count of miRNA genes:	339
Interacting mature miRNAs:	388
Transcripts:	ENSMUST00000044031, ENSMUST00000111227
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357881	Estoq1_m	embryo survival total QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357454	Kidq1_m	kidney weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357436	Splq1_m	spleen weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
39128209	Lwq14_m	liver weight QTL 14 (mouse)					2	20897778	118894840	Mouse
1558899	Egq1_m	early growth QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558966	W10q9_m	weight 10 weeks QTL 9 (mouse)			Not determined		2	20897778	118894840	Mouse
1558915	W3q1_m	weight 3 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558738	W6q1_m	weight 6 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357681	Hrtq1_m	heart weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
4141236	Hbnr5_m	Heligmosomoides bakeri nematode resistance 5 (mouse)			Not determined			31214567	105143570	Mouse
1301109	Dntcs2_m	dental caries susceptibility 2 (mouse)			Not determined		2	40885493	114910165	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
1357577	Trmq3_m	T cell ratio modifier QTL 3 (mouse)			Not determined		2	60520612	119355518	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse
5491197	Mobq5_m	multigenic obesity QTL 5 (mouse)			Not determined		2	65269746	162518926	Mouse
1301660	Iba1_m	induction of brown adipocytes 1 (mouse)			Not determined		2	67647887	101648142	Mouse
13463482	Mchq17_m	mean corpuscular hemoglobin QTL 17 (mouse)					2	67647887	101648142	Mouse
1301882	Etohc2_m	ethanol consumption 2 (mouse)			Not determined		2	68724269	102724407	Mouse
1301948	Elsgp3_m	elevated serum gp70 3 (mouse)			Not determined		2	68724269	102724407	Mouse
4142088	Parms1_m	patched associated RMS 1 (mouse)			Not determined			74524117	114123532	Mouse
11528549	Sluc31_m	susceptibility to lung cancer 31 (mouse)					2	74524117	129213005	Mouse
1301374	Cplaq7_m	circadian period of locomotor activity 7 (mouse)			Not determined		2	76421483	110421651	Mouse
4141657	Mohg1_m	modifier of hg 1 (mouse)			Not determined		2	76678758	103095823	Mouse
10043894	Bw22_m	body weight QTL 22 (mouse)			Not determined		2	80895334	114895334	Mouse
15092054	Egrme5_m	early growth rate, maternal effect 5 (mouse)					2	82190187	118004745	Mouse
1558901	Skmw8_m	skeletal muscle weight 8 (mouse)			Not determined		2	84008488	118008593	Mouse
4141155	Plast2b_m	plasma plant sterol 2b (mouse)			Not determined		2	84013198	148522175	Mouse
10412082	Hylaq1_m	Hyperlocomotor activity related QTL 1 (mouse)			Not determined		2	84013198	148667470	Mouse
5491196	Mobq6_m	multigenic obesity QTL 6 (mouse)			Not determined		2	85724269	180896594	Mouse
11049565	Lmr28g_m	leishmaniasis resistance 28g (mouse)					2	86095716	120095823	Mouse
11038697	Ltpr2d_m	Leishmania tropica response 2d (mouse)					2	86095716	120095823	Mouse
11038698	Ltpr2c_m	Leishmania tropica response 2c (mouse)					2	86095716	120095823	Mouse
1300852	Lmr14_m	leishmaniasis resistance 14 (mouse)			Not determined		2	86095716	120095823	Mouse
1301834	Bits1_m	bitterness sensitivity 1 (mouse)			Not determined		2	87440643	121440778	Mouse
11532731	Sluc31a_m	susceptibility to lung cancer 31a (mouse)					2	88015003	122015170	Mouse
4142223	Femwf4_m	femur work to failure 4 (mouse)			Not determined			88143423	122143570	Mouse
1301098	Cd8mts3_m	CD8 memory T cell subset 3 (mouse)			Not determined		2	91089974	125090104	Mouse
1301909	Smdq2_m	segregation of mitochondrial DNA QTL 2 (mouse)			Not determined		2	92778465	126778607	Mouse
27226761	Feml18_m	femur length 18, 16 week (mouse)					2	94230345	154241920	Mouse
4141448	Mpaps1_m	microphthalmia anophthalmia susceptibility 1 (mouse)			Not determined			97028557	112115196	Mouse
11049569	Lmr28d_m	leishmaniasis resistance 28d (mouse)					2	97123370	131123532	Mouse
11049568	Lmr28c_m	leishmaniasis resistance 28c (mouse)					2	97123370	131123532	Mouse
12904935	Edlmmq2_m	extensor digitorum longus muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
12904954	Gmmq2_m	gastrocnemius muscle mass QTL 2 (mouse)					2	97210364	131210364	Mouse
25394565	Skmw50_m	skeletal muscle weight 50, soleus (mouse)					2	97783888	102476127	Mouse
4141802	Ignpq1_m	IgA nephropathy QTL 1 (mouse)			Not determined		2	100824060	134824269	Mouse
1302203	Gvhd3_m	graft-versus host disease 3 (mouse)			Not determined		2	100942930	134943090	Mouse
1301330	Tbbmd2_m	total body bone mineral density 2 (mouse)			Not determined		2	100942930	134943090	Mouse
1302071	Fembrs1_m	femur breaking strength 1 (mouse)			Not determined		2	100942930	134943090	Mouse

Markers in Region

PMC102178P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,624,646 - 101,624,739	UniSTS	GRCm38
MGSCv37	2	101,464,803 - 101,464,896	UniSTS	GRCm37
Celera	2	102,849,640 - 102,849,733	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
cM Map	2	56.0	UniSTS

PMC137757P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,629,544 - 101,629,794	UniSTS	GRCm38
MGSCv37	2	101,469,701 - 101,469,951	UniSTS	GRCm37
Celera	2	102,854,535 - 102,854,785	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
cM Map	2	56.0	UniSTS

PMC150727P7

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,624,587 - 101,624,863	UniSTS	GRCm38
MGSCv37	2	101,464,744 - 101,465,020	UniSTS	GRCm37
Celera	2	102,849,581 - 102,849,857	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
cM Map	2	56.0	UniSTS

M64796

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,631,108 - 101,631,252	UniSTS	GRCm38
MGSCv37	2	101,471,265 - 101,471,409	UniSTS	GRCm37
Celera	2	102,856,099 - 102,856,243	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
Whitehead/MRC_RH	2	1384.76	UniSTS

PMC196132P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,629,347 - 101,629,669	UniSTS	GRCm38
MGSCv37	2	101,469,504 - 101,469,826	UniSTS	GRCm37
Celera	2	102,854,338 - 102,854,660	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
cM Map	2	56.0	UniSTS

PMC21337P1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,630,003 - 101,630,265	UniSTS	GRCm38
MGSCv37	2	101,470,160 - 101,470,422	UniSTS	GRCm37
Celera	2	102,854,994 - 102,855,256	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
cM Map	2	56.0	UniSTS

Rag2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,629,352 - 101,629,691	UniSTS	GRCm38
MGSCv37	2	101,469,509 - 101,469,848	UniSTS	GRCm37
Celera	2	102,854,343 - 102,854,682	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS

BB208787

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,632,214 - 101,632,363	UniSTS	GRCm38
MGSCv37	2	101,472,371 - 101,472,520	UniSTS	GRCm37
Celera	2	102,857,205 - 102,857,354	UniSTS
Cytogenetic Map	2	E2	UniSTS
cM Map	2	56.0	UniSTS
Whitehead/MRC_RH	2	1384.84	UniSTS

Rag2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	2	E2	UniSTS

Rag2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,628,160 - 101,629,794	UniSTS	GRCm38
MGSCv37	2	101,468,317 - 101,469,951	UniSTS	GRCm37
Celera	2	102,853,153 - 102,854,785	UniSTS
Cytogenetic Map	2	E2	UniSTS

Rag2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,628,160 - 101,629,753	UniSTS	GRCm38
MGSCv37	2	101,468,317 - 101,469,910	UniSTS	GRCm37
Celera	2	102,853,153 - 102,854,744	UniSTS
Cytogenetic Map	2	E2	UniSTS

RAG2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	101,629,625 - 101,630,129	UniSTS	GRCm38
MGSCv37	2	101,469,782 - 101,470,286	UniSTS	GRCm37
Celera	2	102,854,616 - 102,855,120	UniSTS
Cytogenetic Map	2	E2	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_009020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017316606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF159439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK031014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK089075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL929569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY011940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY215075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB654295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC120548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC125473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC144856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M64796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000044031 ⟹ ENSMUSP00000038204

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	101,455,063 - 101,462,874 (+)	Ensembl
GRCm38.p6 Ensembl	2	101,624,718 - 101,632,529 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000111227 ⟹ ENSMUSP00000106858

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	101,455,091 - 101,461,398 (+)	Ensembl
GRCm38.p6 Ensembl	2	101,624,746 - 101,631,053 (+)	Ensembl

RefSeq Acc Id:

NM_009020 ⟹ NP_033046

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	101,455,057 - 101,462,873 (+)	NCBI
GRCm38	2	101,624,712 - 101,632,528 (+)	NCBI
MGSCv37	2	101,464,905 - 101,472,685 (+)	RGD
Celera	2	102,849,742 - 102,857,519 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

ACCAGTGCTCACTGGAACATCTGTAGGCACACAAACACTCTACCCTGCAGCCTTCAGCTTGGCA
CAAACTAAACAGTGACTCTTCCCCAAGTGCCGAGTTTAATTCCTGGCTTGGCCGAAAGGATTCA
GAGAGGGATAAGCAGCCCCTCTGGCCTTCAGTGCCAAAATAAGAAAGAGTATTTCACATCCACA
AGCAGGAAGTACACTTCATACCTCTCTAAGATAAAAGACCTATTCACAATCAAAAATGTCCCTG
CAGATGGTAACAGTGGGTCATAACATAGCCTTAATTCAACCAGGCTTCTCACTTATGAATTTTG
ATGGCCAAGTTTTCTTCTTTGGCCAGAAAGGCTGGCCTAAGAGATCCTGTCCTACTGGAGTCTT
TCATTTTGATATAAAACAAAATCATCTCAAACTGAAGCCTGCAATCTTCTCTAAAGATTCCTGC
TACCTCCCACCTCTTCGTTATCCAGCTACTTGCTCATACAAAGGCAGCATAGACTCTGACAAGC
ATCAATATATCATTCACGGAGGGAAAACACCAAACAATGAGCTTTCCGATAAGATTTATATCAT
GTCTGTCGCTTGCAAGAATAACAAAAAAGTTACTTTCCGTTGCACAGAGAAAGACTTAGTAGGA
GATGTCCCTGAACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGG
GTGTTCTCTTTGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGGAATAG
TGTAGCTGACTGCCTACCCCATGTTTTCTTGATAGATTTTGAATTTGGGTGTGCTACATCATAT
ATTCTCCCAGAACTTCAGGATGGGCTGTCTTTTCATGTTTCTATTGCCAGAAACGATACCGTTT
ATATTTTGGGAGGACACTCACTTGCCAGTAATATACGCCCTGCTAACTTGTATAGAATAAGAGT
GGACCTTCCCCTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTCTCC
AGTGCAATCCTCACTCAAACAAACAATGATGAATTTGTTATTGTGGGTGGTTATCAGCTGGAAA
ATCAGAAAAGGATGGTCTGCAGCCTTGTCTCTCTAGGGGACAACACGATTGAAATCAGTGAGAT
GGAGACTCCTGACTGGACCTCAGATATTAAGCATAGCAAAATATGGTTTGGAAGCAACATGGGA
AACGGGACTATTTTCCTTGGCATACCAGGAGACAATAAGCAGGCTATGTCAGAAGCATTCTATT
TCTATACTTTGAGATGCTCTGAAGAGGATTTGAGTGAAGATCAGAAAATTGTCTCCAACAGTCA
GACATCAACAGAAGATCCTGGGGACTCCACTCCCTTTGAAGACTCAGAGGAATTTTGTTTCAGT
GCTGAAGCAACCAGTTTTGATGGTGACGATGAATTTGACACCTACAATGAAGATGATGAAGATG
ACGAGTCTGTAACCGGCTACTGGATAACATGTTGCCCTACTTGTGATGTTGACATCAATACCTG
GGTTCCGTTCTATTCAACGGAGCTCAATAAACCCGCCATGATCTATTGTTCTCATGGGGATGGG
CACTGGGTACATGCCCAGTGCATGGATTTGGAAGAACGCACACTCATCCACTTGTCAGAAGGAA
GCAACAAGTATTATTGCAATGAACATGTACAGATAGCAAGAGCATTGCAAACTCCCAAAAGAAA
CCCCCCCTTACAAAAACCTCCAATGAAATCCCTCCACAAAAAAGGCTCTGGGAAAGTCTTGACT
CCTGCCAAGAAATCCTTCCTTAGAAGACTGTTTGATTAATTTAGCAAAAGCCCCTCAGACTCAG
GTATATTGCTCTCTGAATCTACTTTCAATCATAAACATTATTTTGATTTTTGTTTACTGAAATC
TCTATGTTATGTTTTAGTTATGTGAATTAAGTGCTGTTGTGATTTATTGTTAAGTATAACTATT
CTAATGTGTGTTTTTTAACATCTTATCCAGGAATGTCTTAAATGAGAAATGTTATACAGTTTTC
CATTAAGGATATCAGTGATAAAGTATAGAACTCTTACATTATTTTGTAACAATCTACATATTGA
ATAGTAACTAAATACCAATAAATAAACTAATGCACAAAAAGTTAAGTTCTTTTGTGTAATAAGT
AGCCTATAGTTGGTTTAAACAGTTAAAACCAACAGCTATATCCCACACTACTGCTGTTTATAAA
TTTTAAGGTGGCCTCTGGTTTATACTTATGAGCAGAATTATATATATTGGTCAATACCATGAAG
AAAAATTTAATTCTATATCAAGCCAGGCATGGTGATGGTGATACATGCCTGTAATCCTGGCACT
TAGGAAGTGGAAGAAGGAAGTTTGTGAGTTTGATGCTTGTTGAGGTATGACCTTTTGCTATGTA
TTGTAGTGTATGAGCCCCAAGACCTGCTTGACCCAGAGACAAGAGAGTCCACACATAGATCCAA
GTAATGCTATGTGACCTTGCCCCCCGGTTACTTGTGATTAGGTGAATAAAGATGTCAACAGCCA
ATAGCTGGGCAGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTAGGAGGAGACC
ATGAGGAAAGGGGAGAAAAAAGTGATGGAGGAGGAGAAAGATGCCATGAGCTAGGAGTTAAGAA
AGCATGGCCATGAGTGCTGGCCAATTGGAGTTAAGAGCAGCCCAGATGAAACATAGTAAGTAAT
AACTCAGGGTTATCGATAGAAAATAGATTTTAGTGCCGTACTCTCCCCAGCCCTAGAGCTGACT
ATGGCTTACTGTAAATATAAAGTTTGTATGTGTCTTTTATCCAGGAACTAAATGGTCAAAGGTG
GAGTAGAAACTCTGGATTGGGATTAAATTTTTCTACAACAAATGCTGGCCTGGGCTAGATTTTA
TCTCATATCCGAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAG
ACCTGAGTCTAATACTGTGGACATTTTCTTGAAGTATCTACATGTACTTCTGGAGTGAAAACAT
ATTCCAACAATATGCCTTTGTTTAAATCACTCACTCACTTTGGGCCCTCACATTATATCCTTTC
AAAATCAATGGTTCACCCCTTTGAAAATGCTTAGCCATAGTCCCTCATCTTCCTTAAAGACAGT
TGTCATCTCTGGAAATAGTCACATGTCATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGC
ATTACCACTTTAAGTGAAAAGTGAAATATGAACATGAGCTCAGACAAAGGTTTGGGACTATCAC
TCTCAAGGAGGCTCTACTGCTAAGTCCTGAACTGCTTTCACATGAATACAGAAATTATAACAAA
AAATATGTAATCAATAAAAAGAAAACTTTCATATTCC

hide sequence

RefSeq Acc Id:

XM_017316606 ⟹ XP_017172095

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	101,458,883 - 101,462,749 (+)	NCBI
GRCm38	2	101,628,377 - 101,631,790 (+)	NCBI

Sequence:

show sequence

GTTTCTCCGCTTTATGCTAGATAAAAGACCTATTCACAATCAAAAATGTCCCTGCAGATGGTAA
CAGTGGGTCATAACATAGCCTTAATTCAACCAGGCTTCTCACTTATGAATTTTGATGGCCAAGT
TTTCTTCTTTGGCCAGAAAGGCTGGCCTAAGAGATCCTGTCCTACTGGAGTCTTTCATTTTGAT
ATAAAACAAAATCATCTCAAACTGAAGCCTGCAATCTTCTCTAAAGATTCCTGCTACCTCCCAC
CTCTTCGTTATCCAGCTACTTGCTCATACAAAGGCAGCATAGACTCTGACAAGCATCAATATAT
CATTCACGGAGGGAAAACACCAAACAATGAGCTTTCCGATAAGATTTATATCATGTCTGTCGCT
TGCAAGAATAACAAAAAAGTTACTTTCCGTTGCACAGAGAAAGACTTAGTAGGAGATGTCCCTG
AACCCAGATACGGCCATTCCATTGACGTGGTGTATAGTCGAGGGAAAAGCATGGGTGTTCTCTT
TGGAGGACGTTCATACATGCCTTCTACCCAGAGAACCACAGAAAAATGGAATAGTGTAGCTGAC
TGCCTACCCCATGTTTTCTTGATAGATTTTGAATTTGGGTGTGCTACATCATATATTCTCCCAG
AACTTCAGGATGGGCTGTCTTTTCATGTTTCTATTGCCAGAAACGATACCGTTTATATTTTGGG
AGGACACTCACTTGCCAGTAATATACGCCCTGCTAACTTGTATAGAATAAGAGTGGACCTTCCC
CTGGGTACCCCAGCAGTGAATTGCACAGTCTTGCCAGGAGGAATCTCTGTCTCCAGTGCAATCC
TCACTCAAACAAACAATGATGAATTTGTTATTGTGGGTGGTTATCAGCTGGAAAATCAGAAAAG
GATGGTCTGCAGCCTTGTCTCTCTAGGGGACAACACGATTGAAATCAGTGAGATGGAGACTCCT
GACTGGACCTCAGATATTAAGCATAGCAAAATATGGTTTGGAAGCAACATGGGAAACGGGACTA
TTTTCCTTGGCATACCAGGAGACAATAAGCAGGCTATGTCAGAAGCATTCTATTTCTATACTTT
GAGATGCTCTGAAGAGGATTTGAGTGAAGATCAGAAAATTGTCTCCAACAGTCAGACATCAACA
GAAGATCCTGGGGACTCCACTCCCTTTGAAGACTCAGAGGAATTTTGTTTCAGTGCTGAAGCAA
CCAGTTTTGATGGTGACGATGAATTTGACACCTACAATGAAGATGATGAAGATGACGAGTCTGT
AACCGGCTACTGGATAACATGTTGCCCTACTTGTGATGTTGACATCAATACCTGGGTTCCGTTC
TATTCAACGGAGCTCAATAAACCCGCCATGATCTATTGTTCTCATGGGGATGGGCACTGGGTAC
ATGCCCAGTGCATGGATTTGGAAGAACGCACACTCATCCACTTGTCAGAAGGAAGCAACAAGTA
TTATTGCAATGAACATGTACAGATAGCAAGAGCATTGCAAACTCCCAAAAGAAACCCCCCCTTA
CAAAAACCTCCAATGAAATCCCTCCACAAAAAAGGCTCTGGGAAAGTCTTGACTCCTGCCAAGA
AATCCTTCCTTAGAAGACTGTTTGATTAATTTAGCAAAAGCCCCTCAGACTCAGGTATATTGCT
CTCTGAATCTACTTTCAATCATAAACATTATTTTGATTTTTGTTTACTGAAATCTCTATGTTAT
GTTTTAGTTATGTGAATTAAGTGCTGTTGTGATTTATTGTTAAGTATAACTATTCTAATGTGTG
TTTTTTAACATCTTATCCAGGAATGTCTTAAATGAGAAATGTTATACAGTTTTCCATTAAGGAT
ATCAGTGATAAAGTATAGAACTCTTACATTATTTTGTAACAATCTACATATTGAATAGTAACTA
AATACCAATAAATAAACTAATGCACAAAAAGTTAAGTTCTTTTGTGTAATAAGTAGCCTATAGT
TGGTTTAAACAGTTAAAACCAACAGCTATATCCCACACTACTGCTGTTTATAAATTTTAAGGTG
GCCTCTGGTTTATACTTATGAGCAGAATTATATATATTGGTCAATACCATGAAGAAAAATTTAA
TTCTATATCAAGCCAGGCATGGTGATGGTGATACATGCCTGTAATCCTGGCACTTAGGAAGTGG
AAGAAGGAAGTTTGTGAGTTTGATGCTTGTTGAGGTATGACCTTTTGCTATGTATTGTAGTGTA
TGAGCCCCAAGACCTGCTTGACCCAGAGACAAGAGAGTCCACACATAGATCCAAGTAATGCTAT
GTGACCTTGCCCCCCGGTTACTTGTGATTAGGTGAATAAAGATGTCAACAGCCAATAGCTGGGC
AGAAGAGCCAAAAGTGGGGATTGAGGGTACCCTGGCTTGATGTAGGAGGAGACCATGAGGAAAG
GGGAGAAAAAAGTGATGGAGGAGGAGAAAGATGCCATGAGCTAGGAGTTAAGAAAGCATGGCCA
TGAGTGCTGGCCAATTGGAGTTAAGAGCAGCCCAGATGAAACATAGTAAGTAATAACTCAGGGT
TATCGATAGAAAATAGATTTTAGTGCCGTACTCTCCCCAGCCCTAGAGCTGACTATGGCTTACT
GTAAATATAAAGTTTGTATGTGTCTTTTATCCAGGAACTAAATGGTCAAAGGTGGAGTAGAAAC
TCTGGATTGGGATTAAATTTTTCTACAACAAATGCTGGCCTGGGCTAGATTTTATCTCATATCC
GAAGGCTGACAGAACACAGAGCACTGGTAACATTGCCACCTGCCATGCACAAAGACCTGAGTCT
AATACTGTGGACATTTTCTTGAAGTATCTACATGTACTTCTGGAGTGAAAACATATTCCAACAA
TATGCCTTTGTTTAAATCACTCACTCACTTTGGGCCCTCACATTATATCCTTTCAAAATCAATG
GTTCACCCCTTTGAAAATGCTTAGCCATAGTCCCTCATCTTCCTTAAAGACAGTTGTCATCTCT
GGAAATAGTCACATGTCATTCAAGGTCCAATACTGTGCAGCTCTGAAGTATGGCATTACCACTT
TAAGTGAAAAGTGAAATATGAACATGAGCTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_033046	(Get FASTA)	NCBI Sequence Viewer
	XP_017172095	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB82302	(Get FASTA)	NCBI Sequence Viewer
	AAG38683	(Get FASTA)	NCBI Sequence Viewer
	AAI20549	(Get FASTA)	NCBI Sequence Viewer
	AAI25474	(Get FASTA)	NCBI Sequence Viewer
	AAI44857	(Get FASTA)	NCBI Sequence Viewer
	AAO61777	(Get FASTA)	NCBI Sequence Viewer
	BAC27213	(Get FASTA)	NCBI Sequence Viewer
	BAC30576	(Get FASTA)	NCBI Sequence Viewer
	BAC40737	(Get FASTA)	NCBI Sequence Viewer
	EDL27654	(Get FASTA)	NCBI Sequence Viewer
	P21784	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_033046 ⟸ NM_009020

- UniProtKB:

P21784 (UniProtKB/Swiss-Prot), Q542D1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSK
DSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKD
LVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCA
TSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGI
SVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGS
NMGNGTIFLGIPGDNKQAMSEAFYFYTLRCSEEDLSEDQKIVSNSQTSTEDPGDSTPFEDSEEF
CFSAEATSFDGDDEFDTYNEDDEDDESVTGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSH
GDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARALQTPKRNPPLQKPPMKSLHKKGSGK
VLTPAKKSFLRRLFD

hide sequence

RefSeq Acc Id:	XP_017172095 ⟸ XM_017316606
- Peptide Label:	isoform X1
- UniProtKB:	P21784 (UniProtKB/Swiss-Prot), Q542D1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSK DSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKD LVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCA TSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGI SVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGS NMGNGTIFLGIPGDNKQAMSEAFYFYTLRCSEEDLSEDQKIVSNSQTSTEDPGDSTPFEDSEEF CFSAEATSFDGDDEFDTYNEDDEDDESVTGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSH GDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARALQTPKRNPPLQKPPMKSLHKKGSGK VLTPAKKSFLRRLFD hide sequence

RefSeq Acc Id:

ENSMUSP00000106858 ⟸ ENSMUST00000111227

RefSeq Acc Id:

ENSMUSP00000038204 ⟸ ENSMUST00000044031

Protein Domains

Recombination activating protein 2 PHD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P21784-F1-model_v2	AlphaFold	P21784	1-527	view protein structure

Promoters

RGD ID:

6878026

Promoter ID:

EPDNEW_M2464

Type:

initiation region

Name:

Rag2_1

Description:

Mus musculus recombination activating gene 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2465

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	101,624,748 - 101,624,808	EPDNEW

RGD ID:

6878028

Promoter ID:

EPDNEW_M2465

Type:

single initiation site

Name:

Rag2_2

Description:

Mus musculus recombination activating gene 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M2464

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	101,628,798 - 101,628,858	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:97849	AgrOrtholog
Ensembl Genes	ENSMUSG00000032864	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000038204	ENTREZGENE
	ENSMUSP00000038204.4	UniProtKB/Swiss-Prot
	ENSMUSP00000106858.2	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000044031	ENTREZGENE
	ENSMUST00000044031.4	UniProtKB/Swiss-Prot
	ENSMUST00000111227.2	UniProtKB/Swiss-Prot
Gene3D-CATH	2.120.10.80	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rag2 PHD finger	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Gal_Oxase/kelch_b-propeller	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Kelch-typ_b-propeller	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAG2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAG2_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:19374	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:97849	ENTREZGENE
NCBI Gene	19374	ENTREZGENE
PANTHER	PTHR10960	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	V(D)J RECOMBINATION-ACTIVATING PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	RAG2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAG2_PHD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rag2	PhenoGen
Superfamily-SCOP	SSF50965	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF57903	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B7ZMX3_MOUSE	UniProtKB/TrEMBL
	P21784	ENTREZGENE
	Q542D1	ENTREZGENE, UniProtKB/TrEMBL
	Q80Z95_MOUSE	UniProtKB/TrEMBL
	Q8CD87_MOUSE	UniProtKB/TrEMBL
	Q99NM2_MOUSE	UniProtKB/TrEMBL
	RAG2_MOUSE	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Mammalian Phenotype