Rpl38 (ribosomal protein L38) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Rpl38 (ribosomal protein L38) Mus musculus
Analyze
Symbol: Rpl38
Name: ribosomal protein L38
RGD ID: 1313683
MGI Page MGI
Description: A structural constituent of ribosome. Acts upstream of or within several processes, including 90S preribosome assembly; middle ear morphogenesis; and sensory perception of sound. Located in cytoplasm. Part of cytosolic large ribosomal subunit and eukaryotic 80S initiation complex. Is active in synapse. Is expressed in thymus primordium. Used to study otitis media. Orthologous to human RPL38 (ribosomal protein L38).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610025G13Rik; 60S ribosomal protein L38; large ribosomal subunit protein eL38; Rb; Rbt; T; Ts; Tss
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm7123   Gm8129   Rpl38-ps1   Rpl38-ps2  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,558,644 - 114,563,159 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,559,350 - 114,563,157 (+)EnsemblGRCm39 Ensembl
GRCm3811114,667,818 - 114,672,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,668,524 - 114,672,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,529,857 - 114,533,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,484,614 - 114,488,421 (+)NCBIMGSCv36mm8
Celera11126,419,661 - 126,431,615 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
otitis media  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal auditory tube morphology  (IAGP)
abnormal autopod morphology  (IAGP)
abnormal blastocoele morphology  (IAGP)
abnormal blastocyst morphology  (IAGP)
abnormal cervical atlas morphology  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal cranium morphology  (IAGP)
abnormal digit morphology  (IAGP)
abnormal distortion product otoacoustic emission  (IAGP)
abnormal embryonic erythropoiesis  (IAGP)
abnormal forelimb morphology  (IAGP)
abnormal hearing physiology  (IAGP)
abnormal heart development  (IEA)
abnormal humerus morphology  (IEA)
abnormal metacarpal bone morphology  (IEA)
abnormal metatarsal bone morphology  (IEA)
abnormal middle ear morphology  (IAGP)
abnormal nasal bone morphology  (IAGP)
abnormal nasal cavity morphology  (IEA)
abnormal neural tube morphology  (IEA)
abnormal neuromere morphology  (IEA)
abnormal notochord morphology  (IAGP)
abnormal nucleolus morphology  (IAGP)
abnormal olfactory bulb morphology  (IEA)
abnormal oval window morphology  (IAGP)
abnormal placenta vasculature  (IEA)
abnormal preimplantation embryo development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal round window morphology  (IAGP)
abnormal sacral vertebrae morphology  (IEA)
abnormal sternebra morphology  (IEA)
abnormal tail morphology  (IAGP)
abnormal vertebrae development  (IEA)
abnormal vertebral arch morphology  (IAGP)
abnormal vertebral lamina morphology  (IAGP)
abnormal vertebral pedicle morphology  (IAGP)
abnormal vertebral spinous process morphology  (IAGP)
abnormal vertebral transverse process morphology  (IAGP)
abnormal vitelline vasculature morphology  (IEA)
absent blastocoele  (IAGP)
absent caudal vertebrae  (IAGP)
absent tail  (IAGP)
anemia  (IAGP)
anencephaly  (IAGP)
asymmetric sternocostal joints  (IAGP)
belly spot  (IAGP)
caudal vertebral fusion  (IAGP)
caudal vertebral transformation  (IAGP)
cervical vertebral fusion  (IAGP)
cleft palate  (IAGP)
cleft upper lip  (IAGP)
conductive hearing loss  (IAGP)
curly tail  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased caudal vertebrae number  (IAGP)
decreased cranium height  (IAGP)
decreased embryo size  (IAGP)
decreased length of long bones  (IEA)
embryonic growth arrest  (IAGP)
embryonic growth retardation  (IAGP)
embryonic lethality at implantation, incomplete penetrance  (IAGP)
embryonic lethality between implantation and somite formation, complete penetrance  (IAGP)
embryonic lethality, complete penetrance  (IAGP)
exencephaly  (IAGP)
herniated abdominal wall  (IAGP)
incomplete rostral neuropore closure  (IAGP)
increased apoptosis  (IAGP)
increased circulating phosphate level  (IAGP)
increased cranium width  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased rib number  (IAGP)
increased sternebra number  (IEA)
increased susceptibility to otitis media  (IAGP)
increased thoracic vertebrae number  (IEA)
irregular coat pigmentation  (IAGP)
kinked tail  (IAGP)
lumbar vertebral transformation  (IAGP)
oligodactyly  (IAGP)
omphalocele  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
polydactyly  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
prenatal lethality, complete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
reduced fertility  (IAGP)
rib fusion  (IEA)
sacral vertebral transformation  (IAGP)
short femur  (IEA)
short humerus  (IEA)
short radius  (IEA)
short snout  (IAGP)
short tail  (IAGP)
short tibia  (IEA)
small caudal vertebrae  (IEA)
spina bifida  (IAGP)
sternebra fusion  (IEA)
vertebral fusion  (IEA)
vertebral transformation  (IAGP)
wavy neural tube  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:465735   PMID:1018005   PMID:2875852   PMID:2980249   PMID:7373273   PMID:7704017   PMID:8001137   PMID:8672134   PMID:8995757   PMID:9615218   PMID:10349636   PMID:10889952  
PMID:10922068   PMID:11042159   PMID:11076861   PMID:11812828   PMID:12466851   PMID:12477932   PMID:14610273   PMID:14779008   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16452087  
PMID:18799693   PMID:19011615   PMID:21062742   PMID:21267068   PMID:21529712   PMID:21677750   PMID:21873635   PMID:24457600   PMID:25211037   PMID:25901680   PMID:26426291   PMID:27113764  
PMID:28378742   PMID:29795351   PMID:30335684   PMID:30550785   PMID:32325033   PMID:35099001   PMID:35596790   PMID:36517592  


Genomics

Comparative Map Data
Rpl38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,558,644 - 114,563,159 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,559,350 - 114,563,157 (+)EnsemblGRCm39 Ensembl
GRCm3811114,667,818 - 114,672,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,668,524 - 114,672,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,529,857 - 114,533,645 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,484,614 - 114,488,421 (+)NCBIMGSCv36mm8
Celera11126,419,661 - 126,431,615 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1179.82NCBI
RPL38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,203,678 - 74,210,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,203,582 - 74,210,655 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,199,817 - 72,206,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,711,390 - 69,717,614 (+)NCBINCBI36Build 36hg18NCBI36
Build 341769,711,411 - 69,717,612NCBI
Celera1768,786,341 - 68,792,564 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,610,253 - 67,616,478 (+)NCBIHuRef
CHM1_11772,264,424 - 72,270,648 (+)NCBICHM1_1
T2T-CHM13v2.01775,094,516 - 75,101,493 (+)NCBIT2T-CHM13v2.0
Rpl38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,200,414 - 100,204,070 (+)NCBIGRCr8
mRatBN7.21099,701,330 - 99,705,004 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1610,182,742 - 10,182,954 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2184,905,204 - 184,905,416 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3155,980,625 - 155,981,036 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1494,400,027 - 94,400,239 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1099,701,362 - 99,705,004 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,759,311 - 104,762,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,222,430 - 104,226,044 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,622,436 - 99,626,071 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,198,424 - 103,202,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2199,479,007 - 199,479,309 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,858,164 - 102,861,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,545,644 - 104,549,279 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,292,414 - 98,296,049 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Rpl38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,129,633 - 1,133,896 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,129,607 - 1,133,896 (+)NCBIChiLan1.0ChiLan1.0
RPL38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,234,364 - 90,240,640 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,056,818 - 95,063,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,142,367 - 68,148,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,700,597 - 73,706,492 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,700,597 - 73,706,492 (+)Ensemblpanpan1.1panPan2
RPL38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,161,862 - 6,169,705 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,783,504 - 6,789,795 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,834,187 - 6,840,190 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.196,874,786 - 6,880,977 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,978,191 - 6,984,645 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.097,038,192 - 7,044,695 (-)NCBIUU_Cfam_GSD_1.0
Rpl38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,744,442 - 6,748,618 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655242,123 - 246,415 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655242,259 - 246,416 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,884,902 - 6,898,764 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,884,899 - 6,889,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,911,975 - 6,917,043 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPL38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,425,014 - 47,432,401 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607718,239,515 - 18,245,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,180,197 - 4,198,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,180,507 - 4,196,514 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpl38
195 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:520
Count of miRNA genes:122
Interacting mature miRNAs:127
Transcripts:ENSMUST00000077915, ENSMUST00000082092, ENSMUST00000106599, ENSMUST00000106602
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse

Markers in Region
WI-9698  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv376140,695,481 - 140,695,696UniSTSGRCm37
MGSCv37652,296,724 - 52,296,939UniSTSGRCm37
Celera652,868,036 - 52,868,251UniSTS
Celera6143,810,408 - 143,810,623UniSTS
Celera4140,213,359 - 140,213,574UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001048057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001048058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001362918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017314720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB037665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK010518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE448083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU921494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY687415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ042718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000077915   ⟹   ENSMUSP00000102211
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,559,374 - 114,563,157 (+)Ensembl
GRCm38.p6 Ensembl11114,668,548 - 114,672,331 (+)Ensembl
Ensembl Acc Id: ENSMUST00000082092   ⟹   ENSMUSP00000080741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,559,452 - 114,563,157 (+)Ensembl
GRCm38.p6 Ensembl11114,668,626 - 114,672,331 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106599   ⟹   ENSMUSP00000102209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,559,435 - 114,563,157 (+)Ensembl
GRCm38.p6 Ensembl11114,668,609 - 114,672,331 (+)Ensembl
Ensembl Acc Id: ENSMUST00000106602   ⟹   ENSMUSP00000102213
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,559,350 - 114,563,157 (+)Ensembl
GRCm38.p6 Ensembl11114,668,524 - 114,672,331 (+)Ensembl
RefSeq Acc Id: NM_001048057   ⟹   NP_001041522
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,559,406 - 114,563,159 (+)NCBI
GRCm3811114,668,580 - 114,672,333 (+)NCBI
MGSCv3711114,529,857 - 114,533,645 (+)RGD
Celera11126,419,661 - 126,431,615 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001048058   ⟹   NP_001041523
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,559,406 - 114,563,159 (+)NCBI
GRCm3811114,668,580 - 114,672,333 (+)NCBI
MGSCv3711114,529,857 - 114,533,645 (+)RGD
Celera11126,419,661 - 126,431,615 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001362918   ⟹   NP_001349847
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,559,406 - 114,563,159 (+)NCBI
GRCm3811114,668,580 - 114,672,333 (+)NCBI
Sequence:
RefSeq Acc Id: NM_023372   ⟹   NP_075861
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,559,406 - 114,563,159 (+)NCBI
GRCm3811114,668,580 - 114,672,333 (+)NCBI
MGSCv3711114,529,857 - 114,533,645 (+)RGD
Celera11126,419,661 - 126,431,615 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017314720   ⟹   XP_017170209
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,558,644 - 114,563,157 (+)NCBI
GRCm3811114,667,818 - 114,672,331 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001041523   ⟸   NM_001048058
- UniProtKB: Q9JJI8 (UniProtKB/Swiss-Prot),   Q52KP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001041522   ⟸   NM_001048057
- UniProtKB: Q9JJI8 (UniProtKB/Swiss-Prot),   Q52KP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_075861   ⟸   NM_023372
- UniProtKB: Q9JJI8 (UniProtKB/Swiss-Prot),   Q52KP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170209   ⟸   XM_017314720
- Peptide Label: isoform X1
- UniProtKB: Q9JJI8 (UniProtKB/Swiss-Prot),   Q52KP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001349847   ⟸   NM_001362918
- UniProtKB: Q9JJI8 (UniProtKB/Swiss-Prot),   Q52KP0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000102213   ⟸   ENSMUST00000106602
Ensembl Acc Id: ENSMUSP00000102209   ⟸   ENSMUST00000106599
Ensembl Acc Id: ENSMUSP00000102211   ⟸   ENSMUST00000077915
Ensembl Acc Id: ENSMUSP00000080741   ⟸   ENSMUST00000082092

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJI8-F1-model_v2 AlphaFold Q9JJI8 1-70 view protein structure

Promoters
RGD ID:6822004
Promoter ID:MM_KWN:10473
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000082092,   ENSMUST00000106599,   NM_001048057,   OTTMUST00000007095
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611114,529,644 - 114,530,144 (+)MPROMDB
RGD ID:6846899
Promoter ID:MM_ACW:9368
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   MEF_B6
Transcripts:RPL38.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611114,532,754 - 114,533,254 (+)MPROMDB
RGD ID:8677274
Promoter ID:EPDNEW_M16667
Type:initiation region
Name:Rpl38_1
Description:Mus musculus ribosomal protein L38 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811114,668,580 - 114,668,640EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914921 AgrOrtholog
Ensembl Genes ENSMUSG00000057322 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000077915 ENTREZGENE
  ENSMUST00000077915.10 UniProtKB/Swiss-Prot
  ENSMUST00000082092 ENTREZGENE
  ENSMUST00000082092.5 UniProtKB/Swiss-Prot
  ENSMUST00000106599 ENTREZGENE
  ENSMUST00000106599.8 UniProtKB/Swiss-Prot
  ENSMUST00000106602 ENTREZGENE
  ENSMUST00000106602.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.720.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ribosomal_L38e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_L38e_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67671 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914921 ENTREZGENE
NCBI Gene 67671 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L38 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10965 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_L38e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rpl38 PhenoGen
UniProt Q52KP0 ENTREZGENE, UniProtKB/TrEMBL
  Q9JJI8 ENTREZGENE, UniProtKB/Swiss-Prot