Atf6 (activating transcription factor 6) - Rat Genome Database

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Gene: Atf6 (activating transcription factor 6) Mus musculus
Analyze
Symbol: Atf6
Name: activating transcription factor 6
RGD ID: 1313518
MGI Page MGI
Description: Predicted to enable several functions, including DNA-binding transcription activator activity, RNA polymerase II-specific; protein heterodimerization activity; and ubiquitin protein ligase binding activity. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including embryo mesenchyme; eye; liver; long bone; and tooth. Used to study achromatopsia 7. Human ortholog(s) of this gene implicated in achromatopsia 7. Orthologous to human ATF6 (activating transcription factor 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9130025P16Rik; 9630036G24; AA789574; activating transcription factor 6 alpha; ATF6-alpha; Atf6alpha; cAMP-dependent transcription factor ATF-6 alpha; cyclic AMP-dependent transcription factor ATF-6 alpha; ESTM4; ESTM49; RIKEN cDNA 9130025P16 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,532,026 - 170,696,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,532,243 - 170,695,340 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381170,704,457 - 170,868,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,704,674 - 170,867,771 (-)Ensemblmm10GRCm38
MGSCv371172,634,588 - 172,797,902 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361172,541,132 - 172,710,564 (-)NCBIMGSCv36mm8
Celera1173,146,825 - 173,324,073 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map176.96NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
(1->4)-beta-D-glucan  (EXP)
(R)-lipoic acid  (EXP)
(S)-nicotine  (ISO)
1,10-phenanthroline  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
15-acetyldeoxynivalenol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
1H-pyrazole  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dichlorophenol  (EXP)
2-amino-2-deoxy-D-glucopyranose  (EXP,ISO)
2-deoxy-D-glucose  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (EXP)
3-acetyldeoxynivalenol  (EXP,ISO)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-Hydroxybenzophenone  (EXP)
4-hydroxynon-2-enal  (ISO)
4-phenylbutyric acid  (EXP,ISO)
5-fluorouracil  (ISO)
6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide  (ISO)
6-propyl-2-thiouracil  (ISO)
abamectin  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
agomelatine  (ISO)
aldehydo-D-glucosamine  (EXP,ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allopurinol  (ISO)
amiodarone  (EXP)
antimony trichloride  (EXP)
antirheumatic drug  (ISO)
apigenin  (EXP)
arecoline  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (EXP,ISO)
atazanavir sulfate  (ISO)
atorvastatin calcium  (ISO)
atrazine  (EXP)
baicalein  (ISO)
BAPTA  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (EXP,ISO)
bilirubin IXalpha  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
boric acid  (ISO)
brefeldin A  (EXP)
Butylparaben  (ISO)
C.I. Natural Red 20  (ISO)
C60 fullerene  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carfilzomib  (ISO)
casticin  (ISO)
chenodeoxycholic acid  (ISO)
chloroacetic acid  (EXP)
Chloroacetonitrile  (EXP)
chlorogenic acid  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
chrysazin  (ISO)
cisplatin  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
crocidolite asbestos  (ISO)
curcumin  (EXP,ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (ISO)
cyproconazole  (ISO)
D-glucose  (ISO)
D-penicillamine  (ISO)
dapagliflozin  (ISO)
DDE  (ISO)
decabromodiphenyl ether  (ISO)
demethoxycurcumin  (ISO)
deoxycholic acid  (ISO)
deoxynivalenol  (EXP,ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
Dibromoacetonitrile  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
dioscin  (EXP,ISO)
dioxygen  (EXP)
diquat  (EXP)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (ISO)
esketamine  (ISO)
ethanol  (EXP,ISO)
fenofibrate  (ISO)
ferrostatin-1  (EXP)
fipronil  (ISO)
fisetin  (ISO)
flutamide  (EXP)
FR900359  (ISO)
fructose  (ISO)
fulvestrant  (ISO)
furan  (ISO)
Fusarenone X  (ISO)
gadolinium trichloride  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
ginsenoside Re  (ISO)
ginsenoside Rg1  (ISO)
glucose  (ISO)
glutathione  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glycyrrhetinate  (ISO)
glycyrrhetinic acid  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
Guanabenz  (EXP)
GW 4064  (EXP)
hesperidin  (ISO)
hexadecanoic acid  (EXP,ISO)
hydroquinone  (ISO)
Ibutilide  (ISO)
indometacin  (ISO)
ivermectin  (EXP)
ketamine  (EXP)
KN-93  (EXP)
L-glutamic acid  (ISO)
L-serine  (ISO)
lead diacetate  (EXP,ISO)
letrozole  (ISO)
linderalactone  (EXP)
lipoic acid  (EXP)
lipopolysaccharide  (ISO)
luteolin  (ISO)
LY294002  (EXP,ISO)
lycopene  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melatonin  (EXP,ISO)
menadione  (ISO)
mercury dichloride  (ISO)
metformin  (EXP,ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (EXP)
methylseleninic acid  (ISO)
metyrapone  (ISO)
minocycline  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N(4)-hydroxycytidine  (EXP)
N-acetyl-L-cysteine  (EXP,ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-hexadecanoylsphingosine  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
naltrexone  (ISO)
naringin  (ISO)
nefazodone  (ISO)
nelfinavir  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
nilotinib  (ISO)
Nivalenol  (ISO)
Nonidet P-40  (ISO)
Norbinaltorphimine  (ISO)
ochratoxin A  (ISO)
oleic acid  (EXP,ISO)
oxaliplatin  (ISO)
Pachymic acid  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
Pendulone  (ISO)
perfluorobutyric acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
perhexiline  (ISO)
Perhexiline maleate  (ISO)
phenethyl caffeate  (EXP)
poly(guanylic acid)  (ISO)
potassium dichromate  (EXP,ISO)
procymidone  (EXP)
propiconazole  (EXP)
psoralen  (ISO)
pyocyanine  (ISO)
pyrazinecarboxamide  (ISO)
quercetin  (ISO)
quercetin 3-O-beta-D-galactopyranoside  (ISO)
quercetin 3-O-beta-D-glucofuranoside  (ISO)
quercetin 3-O-beta-D-glucopyranoside  (ISO)
rac-lactic acid  (ISO)
reactive oxygen species  (EXP)
Repaglinide  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
Riluzole  (ISO)
rimonabant  (ISO)
roflumilast  (ISO)
rotenone  (EXP,ISO)
Salinomycin  (ISO)
salubrinal  (EXP)
saquinavir  (ISO)
serpentine asbestos  (ISO)
Shikonin  (ISO)
silicon dioxide  (EXP,ISO)
simvastatin  (ISO)
sinapic acid  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP,ISO)
SR 144528  (ISO)
streptozocin  (EXP,ISO)
sulindac  (ISO)
sunitinib  (EXP)
syringic acid  (ISO)
tacrolimus hydrate  (EXP)
tauroursodeoxycholic acid  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (EXP)
thymoquinone  (ISO)
Tiron  (EXP)
titanium dioxide  (EXP,ISO)
tributylstannane  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
triclocarban  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
troglitazone  (EXP,ISO)
tungsten  (EXP)
tunicamycin  (EXP,ISO)
valproic acid  (ISO)
vildagliptin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Eddleston J, etal., Genomics 1999 Mar 1;56(2):149-59.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Cellular communication network factor 1 (CCN1) knockdown exerts a protective effect for hepatic ischemia/reperfusion injury by deactivating the MEK/ERK pathway. Liu H, etal., Clin Res Hepatol Gastroenterol. 2021 Sep;45(5):101737. doi: 10.1016/j.clinre.2021.101737. Epub 2021 Jun 16.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Naltrexone changes the expression of lipid metabolism-related proteins in the endoplasmic reticulum stress induced hepatic steatosis in mice. Moslehi A, etal., Clin Exp Pharmacol Physiol. 2017 Feb;44(2):207-212. doi: 10.1111/1440-1681.12695.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The impact of the unfolded protein response on human disease. Wang S and Kaufman RJ, J Cell Biol. 2012 Jun 25;197(7):857-67. doi: 10.1083/jcb.201110131.
12. LncRNA H19 inhibits ER stress induced apoptosis and improves diabetic cardiomyopathy by regulating PI3K/AKT/mTOR axis. Wang S, etal., Aging (Albany NY). 2022 Aug 30;14(16):6809-6828. doi: 10.18632/aging.204256. Epub 2022 Aug 30.
13. Endoplasmic reticulum stress and neurodegeneration in rats neonatally infected with borna disease virus. Williams BL and Lipkin WI, J Virol. 2006 Sep;80(17):8613-26. doi: 10.1128/JVI.00836-06.
14. MTORC1 coordinates the autophagy and apoptosis signaling in articular chondrocytes in osteoarthritic temporomandibular joint. Yang H, etal., Autophagy. 2020 Feb;16(2):271-288. doi: 10.1080/15548627.2019.1606647. Epub 2019 Apr 21.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14559994   PMID:14610273   PMID:14681479   PMID:15238534  
PMID:15598891   PMID:15618518   PMID:15897261   PMID:16141072   PMID:16141073   PMID:16452489   PMID:17090218   PMID:17765676   PMID:17765679   PMID:17765680   PMID:17913437   PMID:17967808  
PMID:18319259   PMID:18360008   PMID:18650380   PMID:18799693   PMID:19139267   PMID:19202076   PMID:19543265   PMID:19615339   PMID:19633360   PMID:19805353   PMID:19858219   PMID:19940266  
PMID:20348923   PMID:20631254   PMID:21044701   PMID:21131360   PMID:21150130   PMID:21267068   PMID:21284983   PMID:21385877   PMID:21841196   PMID:21873635   PMID:21917591   PMID:22013072  
PMID:22102412   PMID:22124452   PMID:22189555   PMID:22326432   PMID:22386934   PMID:22431749   PMID:22555069   PMID:22643896   PMID:22682248   PMID:22699507   PMID:23042294   PMID:23112876  
PMID:23221566   PMID:23395094   PMID:23611781   PMID:23618865   PMID:23618905   PMID:23724040   PMID:24035931   PMID:24069029   PMID:24225943   PMID:24275136   PMID:24339898   PMID:24475193  
PMID:24519940   PMID:24726366   PMID:24746698   PMID:25035425   PMID:25135476   PMID:25203138   PMID:25332179   PMID:25351847   PMID:25492867   PMID:25725420   PMID:25754093   PMID:26029869  
PMID:26105053   PMID:26106220   PMID:26374329   PMID:26483413   PMID:26527399   PMID:26674075   PMID:26708632   PMID:26724566   PMID:26752648   PMID:26816051   PMID:26842780   PMID:27207533  
PMID:27217380   PMID:27239042   PMID:27333444   PMID:27416896   PMID:27581066   PMID:27717400   PMID:27932512   PMID:27938665   PMID:28100484   PMID:28237965   PMID:28396396   PMID:28433684  
PMID:28535855   PMID:28564599   PMID:28747345   PMID:28958904   PMID:29436030   PMID:29522813   PMID:29523177   PMID:29666470   PMID:29773650   PMID:30236984   PMID:30504459   PMID:30582446  
PMID:30604742   PMID:30635284   PMID:30639234   PMID:30643122   PMID:30685387   PMID:30765833   PMID:30963569   PMID:31255486   PMID:31320508   PMID:31506423   PMID:31689600   PMID:31781038  
PMID:32005751   PMID:32053121   PMID:32085622   PMID:32167239   PMID:32194141   PMID:32313051   PMID:32325033   PMID:32373236   PMID:32554809   PMID:32724472   PMID:32758541   PMID:32788214  
PMID:33361822   PMID:33605987   PMID:33728997   PMID:34124052   PMID:34158584   PMID:34168130   PMID:34228641   PMID:34240701   PMID:34381136   PMID:34778458   PMID:34816499   PMID:34863900  
PMID:34904262   PMID:35129674   PMID:35147267   PMID:35167946   PMID:35377412   PMID:35609415   PMID:35862006   PMID:36000401   PMID:36216837   PMID:36265442   PMID:36300114   PMID:36313623  
PMID:36624844   PMID:36841836   PMID:36862017   PMID:36916341   PMID:37025177   PMID:37188818   PMID:37949065   PMID:38007457   PMID:38042368   PMID:38191655   PMID:38218976   PMID:38267365  
PMID:38320450   PMID:38401179   PMID:38496294   PMID:38678560   PMID:38849354   PMID:39181129   PMID:39570676   PMID:40199910  


Genomics

Comparative Map Data
Atf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391170,532,026 - 170,696,414 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1170,532,243 - 170,695,340 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381170,704,457 - 170,868,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1170,704,674 - 170,867,771 (-)Ensemblmm10GRCm38
MGSCv371172,634,588 - 172,797,902 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361172,541,132 - 172,710,564 (-)NCBIMGSCv36mm8
Celera1173,146,825 - 173,324,073 (-)NCBICelera
Cytogenetic Map1H3NCBI
cM Map176.96NCBI
ATF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381161,766,320 - 161,964,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1161,766,298 - 161,977,574 (+)Ensemblhg38GRCh38
GRCh371161,736,110 - 161,933,860 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361160,002,708 - 160,195,476 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341158,467,741 - 158,660,510NCBI
Celera1134,839,502 - 135,032,269 (+)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,980,970 - 133,178,653 (+)NCBIHuRef
CHM1_11163,157,827 - 163,355,630 (+)NCBICHM1_1
T2T-CHM13v2.01161,110,648 - 161,308,347 (+)NCBIT2T-CHM13v2.0
Atf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81385,460,312 - 85,639,959 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1385,462,840 - 85,640,033 (-)EnsemblGRCr8
mRatBN7.21382,927,579 - 83,106,381 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1382,930,034 - 83,107,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1385,558,613 - 85,732,374 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01386,852,287 - 87,025,840 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01384,083,880 - 84,257,664 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01389,053,457 - 89,242,531 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1389,055,983 - 89,242,443 (-)Ensemblrn6Rnor6.0
Rnor_5.01393,668,054 - 93,854,918 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41386,543,773 - 86,718,970 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1382,588,612 - 82,760,829 (-)NCBICelera
RGSC_v3.11386,559,136 - 86,734,174 (-)NCBI
Cytogenetic Map13q24NCBI
Atf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546214,357,945 - 14,548,543 (-)Ensembl
ChiLan1.0NW_00495546214,352,956 - 14,553,299 (-)NCBIChiLan1.0ChiLan1.0
ATF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2187,820,564 - 88,020,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1187,484,878 - 87,688,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01137,178,629 - 137,382,256 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,977,750 - 141,181,837 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,977,750 - 141,176,725 (+)EnsemblpanPan2panpan1.1
ATF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13820,705,167 - 20,903,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3820,709,038 - 20,903,814 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3820,758,598 - 20,956,710 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03820,788,925 - 20,987,730 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3820,788,924 - 20,987,623 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13820,761,253 - 20,959,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03821,114,892 - 21,313,427 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03821,406,602 - 21,593,774 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,651,241 - 7,833,831 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004937131170,649 - 183,942 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl488,591,288 - 88,805,304 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1488,591,279 - 88,806,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2496,614,364 - 96,821,004 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,112,819 - 2,304,063 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl202,117,982 - 2,304,027 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660381,151,751 - 1,344,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624826190,131 - 412,197 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624826189,899 - 412,540 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Atf6
8466 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1673
Count of miRNA genes:705
Interacting mature miRNAs:878
Transcripts:ENSMUST00000027974, ENSMUST00000182787
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
1558802Skmw6_mskeletal muscle weight 6 (mouse)Not determined1167954584195154279Mouse
1302037Nktcn1_mnatural killer T cell numbers 1 (mouse)Not determined1168186243171632257Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357854Sle16_msystematic lupus erythematosus susceptibility 16 (mouse)Not determined1169038741177377587Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1301251Scc3_mcolon tumor susceptibility 3 (mouse)Not determined1168213823195154279Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
10412205Bbaa30_mB.burgdorferi-associated arthritis 30 (mouse)Not determined1169038741174456436Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1301333Mop3_mmorphine preference 3 (mouse)Not determined1167756737189303617Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
12792983Liq1_mlimb inflammation QTL 1 (mouse)1167586086191225397Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
38456000Lick2_mlick rate 2, sucralose (mouse)1170397438173397435Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
38456001Lick1_mlick rate 1, water (mouse)1170397438173397435Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
4141483Femwf7_mfemur work to failure 7 (mouse)Not determined167462514195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
1302158Fembrs5_mfemur breaking strength 5 (mouse)Not determined1167462514195154279Mouse
1301132Mors1_mmodifier of obesity related sterility 1 (mouse)Not determined1170379500195154279Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
4142065Bmd5b_mbone mineral density 5b (mouse)Not determined168835111171765633Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
13207571Tcq11_mtotal cholesterol QTL 11 (mouse)1169137569179647565Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1559024Zit1_mzinc induced tolerance 1 (mouse)Not determined1167462514195154279Mouse
13207587Mwmlpt1_mMorris water maze latency to platform, training, 1 (mouse)1169597438173397435Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
13207591Mwmlpa1_mMorris water maze latency to platform, all, 1 (mouse)1169797438173297435Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
AW061147  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,850,648 - 170,850,758UniSTSGRCm38
MGSCv371172,780,779 - 172,780,889UniSTSGRCm37
Celera1173,305,652 - 173,305,762UniSTS
Cytogenetic Map1H3UniSTS
cM Map185.0UniSTS
Whitehead/MRC_RH12123.31UniSTS
Atf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H3UniSTS
cM Map185.0UniSTS
D1Mit270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,848,421 - 170,848,536UniSTSGRCm38
MGSCv371172,778,552 - 172,778,667UniSTSGRCm37
Celera1173,303,433 - 173,303,530UniSTS
Cytogenetic Map1H3UniSTS
cM Map192.3UniSTS
Whitehead Genetic191.8UniSTS
Whitehead/MRC_RH12123.41UniSTS
Whitehead_YAC1 UniSTS
AI326426  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,754,242 - 170,754,427UniSTSGRCm38
MGSCv371172,684,373 - 172,684,558UniSTSGRCm37
Celera1173,199,106 - 173,199,291UniSTS
Cytogenetic Map1H3UniSTS
cM Map185.0UniSTS
Whitehead/MRC_RH12125.32UniSTS
AA789574  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381170,709,845 - 170,710,050UniSTSGRCm38
MGSCv371172,639,976 - 172,640,181UniSTSGRCm37
Celera1173,152,212 - 173,152,417UniSTS
Cytogenetic Map1H3UniSTS
cM MapUN UniSTS
cM Map1 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027974   ⟹   ENSMUSP00000027974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,532,243 - 170,695,340 (-)Ensembl
GRCm38.p6 Ensembl1170,704,674 - 170,867,771 (-)Ensembl
Ensembl Acc Id: ENSMUST00000182787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1170,619,856 - 170,621,940 (-)Ensembl
GRCm38.p6 Ensembl1170,792,287 - 170,794,371 (-)Ensembl
RefSeq Acc Id: NM_001081304   ⟹   NP_001074773
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,532,026 - 170,695,340 (-)NCBI
GRCm381170,704,457 - 170,867,771 (-)NCBI
MGSCv371172,634,588 - 172,797,902 (-)RGD
Celera1173,146,825 - 173,324,073 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006496792   ⟹   XP_006496855
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,532,323 - 170,685,112 (-)NCBI
GRCm381170,704,754 - 170,857,744 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011238796   ⟹   XP_011237098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,532,245 - 170,696,154 (-)NCBI
GRCm381170,704,754 - 170,868,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253420   ⟹   XP_030109280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391170,532,245 - 170,696,414 (-)NCBI
GRCm381170,704,676 - 170,868,585 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001074773   ⟸   NM_001081304
- UniProtKB: Q8BZ84 (UniProtKB/Swiss-Prot),   F6VAN0 (UniProtKB/Swiss-Prot),   B2RU98 (UniProtKB/Swiss-Prot),   Q811K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006496855   ⟸   XM_006496792
- Peptide Label: isoform X3
- UniProtKB: Q811K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237098   ⟸   XM_011238796
- Peptide Label: isoform X2
- UniProtKB: Q811K9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109280   ⟸   XM_030253420
- Peptide Label: isoform X1
- UniProtKB: Q8BZ84 (UniProtKB/Swiss-Prot),   F6VAN0 (UniProtKB/Swiss-Prot),   B2RU98 (UniProtKB/Swiss-Prot),   Q811K9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000027974   ⟸   ENSMUST00000027974
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F6VAN0-F1-model_v2 AlphaFold F6VAN0 1-656 view protein structure

Promoters
RGD ID:6875632
Promoter ID:EPDNEW_M1267
Type:initiation region
Name:Atf6_1
Description:Mus musculus activating transcription factor 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381170,867,768 - 170,867,828EPDNEW
RGD ID:6817385
Promoter ID:MM_KWN:2804
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001081304
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361172,797,624 - 172,798,124 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926157 AgrOrtholog
Ensembl Genes ENSMUSG00000026663 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000027974 ENTREZGENE
  ENSMUST00000027974.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
InterPro ATF_bZIP_TF UniProtKB/Swiss-Prot
  bZIP UniProtKB/Swiss-Prot
  bZIP_sf UniProtKB/Swiss-Prot
KEGG Report mmu:226641 UniProtKB/Swiss-Prot
MGD MGI:1926157 ENTREZGENE
NCBI Gene Atf6 ENTREZGENE
PANTHER ATF6, ISOFORM C UniProtKB/Swiss-Prot
  PTHR46164:SF1 UniProtKB/Swiss-Prot
Pfam bZIP_1 UniProtKB/Swiss-Prot
PhenoGen Atf6 PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot
  BZIP_BASIC UniProtKB/Swiss-Prot
SMART BRLZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot
UniProt ATF6A_MOUSE UniProtKB/Swiss-Prot
  B2RU98 ENTREZGENE
  F6VAN0 ENTREZGENE
  Q811K9 ENTREZGENE, UniProtKB/TrEMBL
  Q8BZ84 ENTREZGENE
UniProt Secondary B2RU98 UniProtKB/Swiss-Prot
  Q8BZ84 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Atf6  activating transcription factor 6  9130025P16Rik  RIKEN cDNA 9130025P16 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 9130025P16Rik  RIKEN cDNA 9130025P16 gene  Atf6  activating transcription factor 6  Symbol and/or name change 5135510 APPROVED