Ythdf3 (YTH N6-methyladenosine RNA binding protein 3) - Rat Genome Database

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Gene: Ythdf3 (YTH N6-methyladenosine RNA binding protein 3) Mus musculus
Analyze
Symbol: Ythdf3
Name: YTH N6-methyladenosine RNA binding protein 3
RGD ID: 1313143
MGI Page MGI
Description: Predicted to enable N6-methyladenosine-containing RNA reader activity; mRNA binding activity; and ribosome binding activity. Involved in mRNA destabilization and negative regulation of type I interferon-mediated signaling pathway. Located in cytoplasm. Is expressed in brain; cerebral cortex ventricular layer; cortical plate; intestine; and liver. Orthologous to human YTHDF3 (YTH N6-methyladenosine RNA binding protein F3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9130022A11Rik; YTH domain family 3; YTH domain family protein 3; YTH domain-containing family protein 3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39316,237,309 - 16,271,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl316,237,376 - 16,271,201 (+)EnsemblGRCm39 Ensembl
GRCm38316,183,148 - 16,217,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl316,183,212 - 16,217,037 (+)EnsemblGRCm38mm10GRCm38
MGSCv37316,083,183 - 16,117,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36316,375,401 - 16,409,006 (+)NCBIMGSCv36mm8
Celera316,207,826 - 16,241,750 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map34.04NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
cytoplasmic stress granule  (ISO)
P-body  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:17967808   PMID:18799693   PMID:21873635   PMID:22575960   PMID:30559377   PMID:30591559   PMID:31138677   PMID:32325033   PMID:32943573  
PMID:34321999   PMID:35179492   PMID:35508130   PMID:35779442   PMID:35874829   PMID:36039295   PMID:37269288   PMID:38195035  


Genomics

Comparative Map Data
Ythdf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39316,237,309 - 16,271,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl316,237,376 - 16,271,201 (+)EnsemblGRCm39 Ensembl
GRCm38316,183,148 - 16,217,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl316,183,212 - 16,217,037 (+)EnsemblGRCm38mm10GRCm38
MGSCv37316,083,183 - 16,117,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36316,375,401 - 16,409,006 (+)NCBIMGSCv36mm8
Celera316,207,826 - 16,241,750 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map34.04NCBI
YTHDF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38863,168,553 - 63,212,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl863,168,553 - 63,212,786 (+)EnsemblGRCh38hg38GRCh38
GRCh37864,081,112 - 64,125,346 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36864,243,675 - 64,287,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 34864,243,733 - 64,287,898NCBI
Celera860,071,751 - 60,115,983 (+)NCBICelera
Cytogenetic Map8q12.3NCBI
HuRef859,569,636 - 59,613,892 (+)NCBIHuRef
CHM1_1864,134,691 - 64,178,938 (+)NCBICHM1_1
T2T-CHM13v2.0863,593,718 - 63,637,958 (+)NCBIT2T-CHM13v2.0
Ythdf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82100,266,942 - 100,300,896 (+)NCBIGRCr8
mRatBN7.2298,350,304 - 98,384,608 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl298,350,588 - 98,384,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2104,900,698 - 104,933,772 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02103,021,801 - 103,054,881 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0298,060,111 - 98,093,174 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02100,677,388 - 100,711,365 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2100,677,411 - 100,710,417 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02120,415,556 - 120,449,533 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42100,852,768 - 100,885,774 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12100,797,898 - 100,831,297 (+)NCBI
Celera293,815,449 - 93,848,444 (+)NCBICelera
Cytogenetic Map2q24NCBI
Ythdf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544415,758,596 - 15,789,979 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544415,758,596 - 15,789,979 (-)NCBIChiLan1.0ChiLan1.0
YTHDF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2778,894,520 - 78,936,481 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1854,533,668 - 54,575,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0859,701,341 - 59,742,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1861,375,585 - 61,416,992 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl861,375,832 - 61,413,911 (+)Ensemblpanpan1.1panPan2
YTHDF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12913,239,900 - 13,280,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2913,239,966 - 13,277,051 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2913,565,045 - 13,605,151 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02913,341,056 - 13,381,205 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2913,341,035 - 13,381,200 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12913,352,242 - 13,392,349 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02913,469,674 - 13,510,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02913,735,808 - 13,775,969 (+)NCBIUU_Cfam_GSD_1.0
Ythdf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530364,423,434 - 64,462,139 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649610,323,296 - 10,362,163 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649610,323,338 - 10,362,150 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YTHDF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl470,887,105 - 70,928,807 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1470,887,101 - 70,928,839 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2477,198,306 - 77,207,254 (-)NCBISscrofa10.2Sscrofa10.2susScr3
YTHDF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1859,046,407 - 59,089,021 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl859,046,140 - 59,090,425 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603982,493,022 - 82,535,890 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ythdf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474428,558,209 - 28,597,065 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474428,558,988 - 28,597,302 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ythdf3
1278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1872
Count of miRNA genes:460
Interacting mature miRNAs:570
Transcripts:ENSMUST00000108345, ENSMUST00000108346
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301256Skmw1_mskeletal muscle weight 1 (mouse)Not determined3125786432Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
1300559Thypr3_mthymocyte proliferative response 3 (mouse)Not determined3452541938525519Mouse
12798540Scvg2_msubcutaneous vessel growth QTL 2 (mouse)3744981526249645Mouse
1558925Hivan1_mHIV-associated nephropathy 1 (mouse)Not determined3758617468716946Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
4141116Lgaq4_mlate growth adjusted QTL 4 (mouse)Not determined1024922183184946Mouse
4141255W10q3_mweight 10 weeks QTL 3 (mouse)Not determined1024922183184946Mouse
4141563Lgq3_mlate growth QTL 3 (mouse)Not determined1024922183184946Mouse
39128206Lwq18_mliver weight QTL 18 (mouse)31024922183184946Mouse
1357584Splq6_mspleen weight QTL 6 (mouse)Not determined31024922183184946Mouse
1357440Hrtpq1_mheart weight percentage QTL 1 (mouse)Not determined31024922183184946Mouse
1301358Eae20_mexperimental allergic encephalomyelitis 20 (mouse)Not determined31163045345630591Mouse
12738410Lfibq2_mliver fibrosis QTL 2 (mouse)31206506020755242Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse

Markers in Region
UniSTS:224727  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38316,216,659 - 16,216,841UniSTSGRCm38
MGSCv37316,116,659 - 16,116,841UniSTSGRCm37
Celera316,241,372 - 16,241,554UniSTS
Cytogenetic Map3A1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001358043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC022932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ066078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000108345   ⟹   ENSMUSP00000103982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl316,237,376 - 16,271,201 (+)Ensembl
GRCm38.p6 Ensembl316,183,212 - 16,217,037 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108346   ⟹   ENSMUSP00000103983
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl316,237,400 - 16,271,019 (+)Ensembl
GRCm38.p6 Ensembl316,183,236 - 16,216,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000191774   ⟹   ENSMUSP00000141610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl316,237,400 - 16,269,170 (+)Ensembl
GRCm38.p6 Ensembl316,183,236 - 16,215,006 (+)Ensembl
RefSeq Acc Id: ENSMUST00000193598
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl316,237,400 - 16,258,088 (+)Ensembl
GRCm38.p6 Ensembl316,183,236 - 16,203,924 (+)Ensembl
RefSeq Acc Id: NM_001145919   ⟹   NP_001139391
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,329 - 16,271,201 (+)NCBI
GRCm38316,183,165 - 16,217,037 (+)NCBI
MGSCv37316,083,183 - 16,117,037 (+)RGD
Celera316,207,826 - 16,241,750 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001358041   ⟹   NP_001344970
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,329 - 16,271,201 (+)NCBI
GRCm38316,183,165 - 16,217,037 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358042   ⟹   NP_001344971
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,329 - 16,271,201 (+)NCBI
GRCm38316,183,165 - 16,217,037 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001358043   ⟹   NP_001344972
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,329 - 16,271,201 (+)NCBI
GRCm38316,183,165 - 16,217,037 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172677   ⟹   NP_766265
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,329 - 16,271,201 (+)NCBI
GRCm38316,183,165 - 16,217,037 (+)NCBI
MGSCv37316,083,183 - 16,117,037 (+)RGD
Celera316,207,826 - 16,241,750 (+)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535442   ⟹   XP_006535505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,309 - 16,271,201 (+)NCBI
GRCm38316,183,148 - 16,217,037 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163023   ⟹   XP_036018916
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,311 - 16,270,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163024   ⟹   XP_036018917
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,237,311 - 16,270,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163025   ⟹   XP_036018918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39316,238,091 - 16,270,969 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766265   ⟸   NM_172677
- Peptide Label: isoform 1
- UniProtKB: Q8BYK6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139391   ⟸   NM_001145919
- Peptide Label: isoform 2
- UniProtKB: Q6NXJ8 (UniProtKB/Swiss-Prot),   Q6NXJ6 (UniProtKB/Swiss-Prot),   Q3UVI5 (UniProtKB/Swiss-Prot),   Q8BKB6 (UniProtKB/Swiss-Prot),   Q8BYK6 (UniProtKB/Swiss-Prot),   Q7TN20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535505   ⟸   XM_006535442
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001344970   ⟸   NM_001358041
- Peptide Label: isoform 3
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344972   ⟸   NM_001358043
- Peptide Label: isoform 4
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001344971   ⟸   NM_001358042
- Peptide Label: isoform 4
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000103983   ⟸   ENSMUST00000108346
RefSeq Acc Id: ENSMUSP00000103982   ⟸   ENSMUST00000108345
RefSeq Acc Id: ENSMUSP00000141610   ⟸   ENSMUST00000191774
RefSeq Acc Id: XP_036018916   ⟸   XM_036163023
- Peptide Label: isoform X2
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018917   ⟸   XM_036163024
- Peptide Label: isoform X2
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018918   ⟸   XM_036163025
- Peptide Label: isoform X2
- UniProtKB: Q7TN20 (UniProtKB/TrEMBL)
Protein Domains
YTH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BYK6-F1-model_v2 AlphaFold Q8BYK6 1-585 view protein structure

Promoters
RGD ID:6834629
Promoter ID:MM_KWN:33812
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000076559,   NM_001145919,   NM_172677,   NR_027375_YTHDF3
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36316,082,899 - 16,083,399 (+)MPROMDB
RGD ID:6834626
Promoter ID:MM_KWN:33813
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Spleen
Transcripts:ENSMUST00000050490
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36316,086,964 - 16,087,464 (+)MPROMDB
RGD ID:6880284
Promoter ID:EPDNEW_M3593
Type:initiation region
Name:Ythdf3_1
Description:Mus musculus YTH domain family 3 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38316,183,257 - 16,183,317EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918850 AgrOrtholog
Ensembl Genes ENSMUSG00000047213 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000108345 ENTREZGENE
  ENSMUST00000108345.9 UniProtKB/Swiss-Prot
  ENSMUST00000108346 ENTREZGENE
  ENSMUST00000108346.5 UniProtKB/Swiss-Prot
  ENSMUST00000191774 ENTREZGENE
  ENSMUST00000191774.6 UniProtKB/Swiss-Prot
Gene3D-CATH ph1033 like domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro YTH_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YTH_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:229096 UniProtKB/Swiss-Prot
MGD MGI:1918850 ENTREZGENE
NCBI Gene 229096 ENTREZGENE
PANTHER PTHR12357 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YTH DOMAIN-CONTAINING FAMILY PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam YTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ythdf3 PhenoGen
PROSITE YTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP beta-sandwich domain of Sec23/24 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UVI5 ENTREZGENE
  Q6NXJ6 ENTREZGENE
  Q6NXJ8 ENTREZGENE
  Q7TN20 ENTREZGENE, UniProtKB/TrEMBL
  Q8BKB6 ENTREZGENE
  Q8BVC6_MOUSE UniProtKB/TrEMBL
  Q8BYK6 ENTREZGENE
  Q8R5D2_MOUSE UniProtKB/TrEMBL
  YTHD3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3UVI5 UniProtKB/Swiss-Prot
  Q6NXJ6 UniProtKB/Swiss-Prot
  Q6NXJ8 UniProtKB/Swiss-Prot
  Q8BKB6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-09 Ythdf3  YTH N6-methyladenosine RNA binding protein 3    YTH domain family 3  Symbol and/or name change 5135510 APPROVED