Nubp2 (nucleotide binding protein 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nubp2 (nucleotide binding protein 2) Mus musculus
Analyze
Symbol: Nubp2
Name: nucleotide binding protein 2
RGD ID: 1312954
MGI Page MGI
Description: Predicted to enable iron-sulfur cluster binding activity. Predicted to be involved in iron-sulfur cluster assembly. Located in nucleus and spindle pole centrosome. Is expressed in several structures, including extraembryonic component; genitourinary system; liver; lung; and spleen. Orthologous to human NUBP2 (NUBP iron-sulfur cluster assembly factor 2, cytosolic).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytosolic Fe-S cluster assembly factor NUBP2; D17Wsu11; D17Wsu11e; NBP 2; nucleotide-binding protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,101,585 - 25,105,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,101,585 - 25,105,323 (-)EnsemblGRCm39 Ensembl
GRCm381724,882,611 - 24,886,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,882,611 - 24,886,349 (-)EnsemblGRCm38mm10GRCm38
MGSCv371725,019,556 - 25,023,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,610,217 - 24,613,930 (-)NCBIMGSCv36mm8
Celera1725,409,418 - 25,413,163 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Ko MS, etal., Hum Mol Genet 1998 Nov;7(12):1967-78.
3. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Biogenesis of cytosolic and nuclear iron-sulfur proteins and their role in genome stability. Paul VD and Lill R, Biochim Biophys Acta. 2015 Jun;1853(6):1528-39. doi: 10.1016/j.bbamcr.2014.12.018. Epub 2015 Jan 10.
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10486206   PMID:10899141   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11691847   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16638812   PMID:19263241   PMID:21873635   PMID:23028652   PMID:23807208   PMID:26153462   PMID:27113764   PMID:28378742   PMID:31733190   PMID:35449600  
PMID:38355793  


Genomics

Comparative Map Data
Nubp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,101,585 - 25,105,423 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,101,585 - 25,105,323 (-)EnsemblGRCm39 Ensembl
GRCm381724,882,611 - 24,886,350 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,882,611 - 24,886,349 (-)EnsemblGRCm38mm10GRCm38
MGSCv371725,019,556 - 25,023,295 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,610,217 - 24,613,930 (-)NCBIMGSCv36mm8
Celera1725,409,418 - 25,413,163 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
NUBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,782,960 - 1,789,186 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,782,932 - 1,789,186 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,832,961 - 1,839,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,772,960 - 1,779,187 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,772,959 - 1,779,187NCBI
Celera162,045,211 - 2,051,474 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,755,830 - 1,762,093 (+)NCBIHuRef
CHM1_1161,832,881 - 1,839,140 (+)NCBICHM1_1
T2T-CHM13v2.0161,798,796 - 1,805,026 (+)NCBIT2T-CHM13v2.0
Nubp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,407,743 - 14,411,428 (-)NCBIGRCr8
mRatBN7.21013,903,224 - 13,906,928 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,903,224 - 13,906,969 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,650,265 - 18,653,975 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,139,125 - 18,142,835 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,638,342 - 13,642,052 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,244,201 - 14,247,930 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,244,203 - 14,247,886 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,060,217 - 14,063,902 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,131,309 - 14,134,994 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,131,309 - 14,134,994 (-)NCBI
Celera1013,582,432 - 13,586,117 (-)NCBICelera
Cytogenetic Map10q12NCBI
Nubp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,483,549 - 15,486,741 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544215,482,916 - 15,486,830 (-)NCBIChiLan1.0ChiLan1.0
NUBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,048,898 - 2,055,881 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,830,832 - 5,837,318 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016405,264 - 411,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1161,836,186 - 1,842,752 (+)NCBIpanpan1.1PanPan1.1panPan2
NUBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,119,332 - 39,121,869 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,119,337 - 39,122,370 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,358,237 - 40,360,777 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,435,772 - 39,438,315 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,435,775 - 39,438,277 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,112,469 - 39,115,008 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,085,049 - 39,087,589 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,563,512 - 39,566,056 (-)NCBIUU_Cfam_GSD_1.0
Nubp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,487,638 - 104,501,366 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,208,518 - 2,211,653 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,208,102 - 2,211,910 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,178,417 - 40,186,551 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1340,178,417 - 40,184,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,626,428 - 41,633,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,687,972 - 1,697,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,691,565 - 1,697,562 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,388,788 - 29,394,690 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nubp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913465,894 - 469,389 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913465,097 - 469,663 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nubp2
118 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:162
Interacting mature miRNAs:170
Transcripts:ENSMUST00000044252
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1357902Obq19_mobesity QTL 19 (mouse)Not determined17125662076Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12910769Rtmq1_mrenal tumor modifier QTL 1 (mouse)172290003625721472Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse

Markers in Region
RH124595  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,882,672 - 24,882,780UniSTSGRCm38
MGSCv371725,019,617 - 25,019,725UniSTSGRCm37
Celera1725,409,479 - 25,409,587UniSTS
Cytogenetic Map17A3.3UniSTS
RH125683  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381724,882,666 - 24,882,917UniSTSGRCm38
MGSCv371725,019,611 - 25,019,862UniSTSGRCm37
Celera1725,409,473 - 25,409,724UniSTS
Cytogenetic Map17A3.3UniSTS
cM Map1710.0UniSTS


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001355396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_166443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC166102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF114169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF220294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI735707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU700400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000044252   ⟹   ENSMUSP00000049319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,105,322 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,886,348 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234098
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,105,321 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,886,347 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234261   ⟹   ENSMUSP00000157043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,105,289 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,886,315 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234293   ⟹   ENSMUSP00000157234
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,592 - 25,105,303 (-)Ensembl
GRCm38.p6 Ensembl1724,882,618 - 24,886,329 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234352   ⟹   ENSMUSP00000157112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,591 - 25,105,323 (-)Ensembl
GRCm38.p6 Ensembl1724,882,617 - 24,886,349 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234489   ⟹   ENSMUSP00000157348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,593 - 25,105,294 (-)Ensembl
GRCm38.p6 Ensembl1724,882,619 - 24,886,320 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234579   ⟹   ENSMUSP00000157158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,585 - 25,105,313 (-)Ensembl
GRCm38.p6 Ensembl1724,882,611 - 24,886,339 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234583   ⟹   ENSMUSP00000157034
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,102,023 - 25,105,303 (-)Ensembl
GRCm38.p6 Ensembl1724,883,049 - 24,886,329 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234597   ⟹   ENSMUSP00000157064
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,104,888 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,885,914 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234598   ⟹   ENSMUSP00000157118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,104,591 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,885,617 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234674   ⟹   ENSMUSP00000157349
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,104,888 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,885,914 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234915
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,104,218 - 25,105,281 (-)Ensembl
GRCm38.p6 Ensembl1724,885,244 - 24,886,307 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234928   ⟹   ENSMUSP00000157378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,586 - 25,104,925 (-)Ensembl
GRCm38.p6 Ensembl1724,882,612 - 24,885,951 (-)Ensembl
Ensembl Acc Id: ENSMUST00000234968   ⟹   ENSMUSP00000157175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,101,591 - 25,105,307 (-)Ensembl
GRCm38.p6 Ensembl1724,882,617 - 24,886,333 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235055   ⟹   ENSMUSP00000157236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,102,070 - 25,105,312 (-)Ensembl
GRCm38.p6 Ensembl1724,883,096 - 24,886,338 (-)Ensembl
RefSeq Acc Id: NM_001355396   ⟹   NP_001342325
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,585 - 25,105,324 (-)NCBI
GRCm381724,882,611 - 24,886,350 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379052   ⟹   NP_001365981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379053   ⟹   NP_001365982
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379054   ⟹   NP_001365983
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379055   ⟹   NP_001365984
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001379056   ⟹   NP_001365985
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,104,915 (-)NCBI
GRCm381724,882,617 - 24,885,941 (-)NCBI
Sequence:
RefSeq Acc Id: NM_011956   ⟹   NP_036086
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,585 - 25,105,324 (-)NCBI
GRCm381724,882,611 - 24,886,350 (-)NCBI
MGSCv371725,019,556 - 25,023,295 (-)RGD
Celera1725,409,418 - 25,413,163 (-)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_166441
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166442
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: NR_166443
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,591 - 25,105,302 (-)NCBI
GRCm381724,882,617 - 24,886,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160624   ⟹   XP_036016517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,101,586 - 25,105,423 (-)NCBI
Sequence:
RefSeq Acc Id: NP_036086   ⟸   NM_011956
- Peptide Label: isoform 1
- UniProtKB: Q9R061 (UniProtKB/Swiss-Prot),   A0A3Q4L2S1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342325   ⟸   NM_001355396
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EH93 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365981   ⟸   NM_001379052
- Peptide Label: isoform 3
- UniProtKB: A0A3Q4L2S1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365984   ⟸   NM_001379055
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EH93 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365982   ⟸   NM_001379053
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EH93 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365983   ⟸   NM_001379054
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EH93 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365985   ⟸   NM_001379056
- Peptide Label: isoform 2
- UniProtKB: A0A3Q4EH93 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000049319   ⟸   ENSMUST00000044252
Ensembl Acc Id: ENSMUSP00000157236   ⟸   ENSMUST00000235055
Ensembl Acc Id: ENSMUSP00000157378   ⟸   ENSMUST00000234928
Ensembl Acc Id: ENSMUSP00000157175   ⟸   ENSMUST00000234968
Ensembl Acc Id: ENSMUSP00000157348   ⟸   ENSMUST00000234489
Ensembl Acc Id: ENSMUSP00000157234   ⟸   ENSMUST00000234293
Ensembl Acc Id: ENSMUSP00000157112   ⟸   ENSMUST00000234352
Ensembl Acc Id: ENSMUSP00000157349   ⟸   ENSMUST00000234674
Ensembl Acc Id: ENSMUSP00000157118   ⟸   ENSMUST00000234598
Ensembl Acc Id: ENSMUSP00000157064   ⟸   ENSMUST00000234597
Ensembl Acc Id: ENSMUSP00000157034   ⟸   ENSMUST00000234583
Ensembl Acc Id: ENSMUSP00000157158   ⟸   ENSMUST00000234579
Ensembl Acc Id: ENSMUSP00000157043   ⟸   ENSMUST00000234261
RefSeq Acc Id: XP_036016517   ⟸   XM_036160624
- Peptide Label: isoform X1
- UniProtKB: A0A3Q4EGU9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R061-F1-model_v2 AlphaFold Q9R061 1-275 view protein structure

Promoters
RGD ID:13675092
Promoter ID:EPDNEW_M21695
Type:initiation region
Name:Nubp2_1
Description:Mus musculus nucleotide binding protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381724,886,315 - 24,886,375EPDNEW
RGD ID:6828428
Promoter ID:MM_KWN:22558
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000117890,   ENSMUST00000119829,   ENSMUST00000120943,   NM_011956,   OTTMUST00000075359,   OTTMUST00000075361,   OTTMUST00000075363,   OTTMUST00000075364,   OTTMUST00000075365
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361725,022,351 - 25,025,302 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1347072 AgrOrtholog
Ensembl Genes ENSMUSG00000039183 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000044252 ENTREZGENE
  ENSMUST00000044252.7 UniProtKB/Swiss-Prot
  ENSMUST00000234261 ENTREZGENE
  ENSMUST00000234261.2 UniProtKB/TrEMBL
  ENSMUST00000234293 ENTREZGENE
  ENSMUST00000234293.2 UniProtKB/TrEMBL
  ENSMUST00000234352 ENTREZGENE
  ENSMUST00000234352.2 UniProtKB/TrEMBL
  ENSMUST00000234489.2 UniProtKB/TrEMBL
  ENSMUST00000234579.2 UniProtKB/TrEMBL
  ENSMUST00000234583.2 UniProtKB/TrEMBL
  ENSMUST00000234597.2 UniProtKB/TrEMBL
  ENSMUST00000234598.2 UniProtKB/TrEMBL
  ENSMUST00000234674.2 UniProtKB/TrEMBL
  ENSMUST00000234928 ENTREZGENE
  ENSMUST00000234928.2 UniProtKB/TrEMBL
  ENSMUST00000234968 ENTREZGENE
  ENSMUST00000234968.2 UniProtKB/TrEMBL
  ENSMUST00000235055.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Mrp/NBP35_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mrp_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUBP2/Cfd1_eukaryotes UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YlxH/NBP35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:26426 UniProtKB/Swiss-Prot
MGD MGI:1347072 ENTREZGENE
NCBI Gene 26426 ENTREZGENE
PANTHER CYTOSOLIC FE-S CLUSTER ASSEMBLY FACTOR NUBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23264 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ParA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nubp2 PhenoGen
PROSITE MRP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A3Q4EBU9_MOUSE UniProtKB/TrEMBL
  A0A3Q4EC31_MOUSE UniProtKB/TrEMBL
  A0A3Q4EGA7_MOUSE UniProtKB/TrEMBL
  A0A3Q4EGB1_MOUSE UniProtKB/TrEMBL
  A0A3Q4EGS2_MOUSE UniProtKB/TrEMBL
  A0A3Q4EGU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A3Q4EH93 ENTREZGENE, UniProtKB/TrEMBL
  A0A3Q4EIH1_MOUSE UniProtKB/TrEMBL
  A0A3Q4L2S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A3Q4L2Y0_MOUSE UniProtKB/TrEMBL
  A0A3Q4L320_MOUSE UniProtKB/TrEMBL
  NUBP2_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE