Atp6v0a4 (ATPase, H+ transporting, lysosomal V0 subunit A4) - Rat Genome Database

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Gene: Atp6v0a4 (ATPase, H+ transporting, lysosomal V0 subunit A4) Mus musculus
Analyze
Symbol: Atp6v0a4
Name: ATPase, H+ transporting, lysosomal V0 subunit A4
RGD ID: 1312857
MGI Page MGI
Description: Predicted to enable ATPase binding activity and P-type proton-exporting transporter activity. Involved in synaptic vesicle lumen acidification. Acts upstream of or within proton transmembrane transport. Located in apical plasma membrane; brush border; and endosome. Part of vacuolar proton-transporting V-type ATPase complex. Is expressed in several structures, including alimentary system; genitourinary system; musculoskeletal system; respiratory system; and sensory organ. Used to study renal tubular acidosis. Human ortholog(s) of this gene implicated in renal tubular acidosis. Orthologous to human ATP6V0A4 (ATPase H+ transporting V0 subunit a4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: a4; Atp6; Atp6n1b; ATPase, H+ transporting, lysosomal (vacuolar proton pump) noncatalytic accessory protein 1B; V-ATPase 116 kDa; V-ATPase 116 kDa isoform a 4; V-ATPase alpha 4; V-type proton ATPase 116 kDa subunit a; V-type proton ATPase 116 kDa subunit a 4; V-type proton ATPase 116 kDa subunit a isoform 4; vacuolar proton translocating ATPase 100 kDa a4 subunit; vacuolar proton translocating ATPase 116 kDa subunit a kidney isoform
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,025,418 - 38,101,521 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,025,418 - 38,101,521 (-)EnsemblGRCm39 Ensembl
GRCm38638,048,483 - 38,124,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,048,483 - 38,124,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv37637,998,483 - 38,074,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36637,978,091 - 38,054,182 (-)NCBIMGSCv36mm8
Celera638,029,008 - 38,104,935 (-)NCBICelera
Cytogenetic Map6B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Mutations in ATP6N1B, encoding a new kidney vacuolar proton pump 116-kD subunit, cause recessive distal renal tubular acidosis with preserved hearing. Smith AN, etal., Nat Genet. 2000 Sep;26(1):71-5.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11495928   PMID:11498539   PMID:12477932   PMID:14610273   PMID:14675051   PMID:14681479   PMID:15385584  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:16177003   PMID:17595521   PMID:17971301   PMID:19214237   PMID:20711468   PMID:21267068   PMID:21873635   PMID:22808246   PMID:22872862  
PMID:22933323   PMID:23065636   PMID:23704941   PMID:24194600   PMID:26442671   PMID:27368196   PMID:27626380   PMID:28705898   PMID:28793259   PMID:28994389   PMID:35948619   PMID:35988642  


Genomics

Comparative Map Data
Atp6v0a4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,025,418 - 38,101,521 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,025,418 - 38,101,521 (-)EnsemblGRCm39 Ensembl
GRCm38638,048,483 - 38,124,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,048,483 - 38,124,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv37637,998,483 - 38,074,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36637,978,091 - 38,054,182 (-)NCBIMGSCv36mm8
Celera638,029,008 - 38,104,935 (-)NCBICelera
Cytogenetic Map6B1NCBI
ATP6V0A4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387138,706,294 - 138,798,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7138,706,294 - 138,799,560 (-)EnsemblGRCh38hg38GRCh38
GRCh377138,391,039 - 138,482,941 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367138,041,579 - 138,133,481 (-)NCBINCBI36Build 36hg18NCBI36
Build 347137,848,294 - 137,916,037NCBI
Celera7133,128,799 - 133,220,749 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7132,702,109 - 132,793,853 (-)NCBIHuRef
CHM1_17138,324,308 - 138,416,716 (-)NCBICHM1_1
T2T-CHM13v2.07140,018,750 - 140,111,076 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27137,735,216 - 137,827,150 (-)NCBI
Atp6v0a4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2466,760,159 - 66,842,110 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl466,760,159 - 66,842,110 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx471,701,190 - 71,783,633 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0467,622,267 - 67,704,722 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0466,020,233 - 66,102,520 (-)NCBIRnor_WKY
Rnor_6.0465,736,585 - 65,821,916 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl465,736,585 - 65,818,521 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0465,554,091 - 65,639,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4465,588,970 - 65,671,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1465,865,107 - 65,930,467 (-)NCBI
Celera461,781,600 - 61,863,525 (-)NCBICelera
Cytogenetic Map4q22NCBI
Atp6v0a4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554944,199,803 - 4,251,569 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554944,174,542 - 4,251,450 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0A4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1727,531,314 - 27,596,491 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07130,665,997 - 130,758,537 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17143,154,382 - 143,210,822 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7143,154,712 - 143,218,802 (-)Ensemblpanpan1.1panPan2
ATP6V0A4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,864,938 - 9,949,740 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,885,149 - 9,949,708 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1610,706,132 - 10,790,666 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,784,775 - 9,869,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,804,731 - 9,869,865 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,733,524 - 9,818,044 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,576,588 - 9,661,385 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,650,052 - 9,734,848 (+)NCBIUU_Cfam_GSD_1.0
Atp6v0a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511816,113,322 - 16,180,145 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365923,039,705 - 3,086,844 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365923,039,911 - 3,083,610 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0A4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1810,919,422 - 10,966,410 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11810,868,208 - 10,966,801 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21811,330,847 - 11,430,526 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V0A4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121107,407,831 - 107,505,300 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660724,258,221 - 4,314,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0a4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476519,149,589 - 19,194,158 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476519,149,353 - 19,219,242 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp6v0a4
2951 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:976
Count of miRNA genes:503
Interacting mature miRNAs:601
Transcripts:ENSMUST00000040259, ENSMUST00000114908, ENSMUST00000130816, ENSMUST00000132736, ENSMUST00000135594, ENSMUST00000138385, ENSMUST00000144752
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse
12904940Edlmmq5_mextensor digitorum longus muscle mass QTL 5 (mouse)61961634653616346Mouse
12904943Tammq4_mtibialis anterior muscle mass QTL 4 (mouse)61961634653616346Mouse
12904952Gmmq4_mgastrocnemius muscle mass QTL 4 (mouse)61961634653616346Mouse
10412213Sxbq2_mSGC/Knj cross B6 QTL 2 (mouse)Not determined61991268571299759Mouse
10412107Desp4_mdespair 4 (mouse)Not determined62004983054049830Mouse
14700690Ccs6_mcolon cancer susceptibility 6 (mouse)62377693457776934Mouse
13208564Bmiq7_mbody mass index QTL 7 (mouse)62499999979976983Mouse
4141988Obrq3_mobesity resistance QTL 3 (mouse)Not determined2829099362291115Mouse
4141454Obrq4_mobesity resistance QTL 4 (mouse)Not determined3170349965703611Mouse
12880425V25Dq5_mvitamin D inactive form serum level QTL 5 (mouse)63267698066676980Mouse
4141782Mrdq5_mmodifier of retinal degeneration QTL 5 (mouse)Not determined3282758578215957Mouse
1300959Lxw2_mlupus BXSB x NZW 2 (mouse)Not determined63387226167872400Mouse
11252142Mom12_mModifier of Min 12 (mouse)63387226167872400Mouse
10043868Cia6b_mcollagen induced arthritis QTL 6b (mouse)Not determined63471159838946537Mouse
1300767Aliq4_macute lung injury QTL 4 (mouse)Not determined63627333270273435Mouse
1357539Bsbob3_mBSB obesity 3 (mouse)Not determined63644845670448576Mouse
4141094Hrtr1_mheart rate 1 (mouse)Not determined3674146370741463Mouse
14746995Manh60_mmandible shape 60 (mouse)63720266271202662Mouse

Markers in Region
Atp6v0a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS
cM Map6 UniSTS
Atp6v0a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS
Atp6v0a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS
cM Map6 UniSTS
Atp6v0a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS
Atp6v0a4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6B1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000040259   ⟹   ENSMUSP00000039381
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,025,418 - 38,101,521 (-)Ensembl
GRCm38.p6 Ensembl638,048,483 - 38,124,586 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114908   ⟹   ENSMUSP00000110558
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,025,418 - 38,086,484 (-)Ensembl
GRCm38.p6 Ensembl638,048,483 - 38,109,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130816
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,070,615 - 38,101,424 (-)Ensembl
GRCm38.p6 Ensembl638,093,680 - 38,124,489 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132736
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,025,418 - 38,028,496 (-)Ensembl
GRCm38.p6 Ensembl638,048,483 - 38,051,561 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,028,216 - 38,032,088 (-)Ensembl
GRCm38.p6 Ensembl638,051,281 - 38,055,153 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,065,654 - 38,074,120 (-)Ensembl
GRCm38.p6 Ensembl638,088,719 - 38,097,185 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144752
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl638,055,850 - 38,060,307 (-)Ensembl
GRCm38.p6 Ensembl638,078,915 - 38,083,372 (-)Ensembl
RefSeq Acc Id: NM_080467   ⟹   NP_536715
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39638,025,418 - 38,101,521 (-)NCBI
GRCm38638,048,483 - 38,124,586 (-)ENTREZGENE
MGSCv37637,998,483 - 38,074,586 (-)RGD
Celera638,029,008 - 38,104,935 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_536715   ⟸   NM_080467
- UniProtKB: Q920B5 (UniProtKB/Swiss-Prot),   Q920R6 (UniProtKB/Swiss-Prot),   Q3UP55 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000039381   ⟸   ENSMUST00000040259
RefSeq Acc Id: ENSMUSP00000110558   ⟸   ENSMUST00000114908

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920R6-F1-model_v2 AlphaFold Q920R6 1-833 view protein structure

Promoters
RGD ID:6838967
Promoter ID:MM_KWN:45607
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000053650
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36638,004,646 - 38,005,697 (-)MPROMDB
RGD ID:6838966
Promoter ID:MM_KWN:45609
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000053649
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36638,033,296 - 38,034,047 (-)MPROMDB
RGD ID:6838965
Promoter ID:MM_KWN:45610
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000053648
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36638,046,846 - 38,047,797 (-)MPROMDB
RGD ID:6838963
Promoter ID:MM_KWN:45612
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Lung
Transcripts:ENSMUST00000114908
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36638,059,531 - 38,060,047 (-)MPROMDB
RGD ID:6838970
Promoter ID:MM_KWN:45613
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:NM_080467,   OTTMUST00000053647,   UC009BJR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36638,073,726 - 38,077,327 (-)MPROMDB
RGD ID:6889348
Promoter ID:EPDNEW_M8125
Type:multiple initiation site
Name:Atp6v0a4_2
Description:Mus musculus ATPase, H+ transporting, lysosomal V0 subunit A4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8126  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38638,109,563 - 38,109,623EPDNEW
RGD ID:6889350
Promoter ID:EPDNEW_M8126
Type:initiation region
Name:Atp6v0a4_1
Description:Mus musculus ATPase, H+ transporting, lysosomal V0 subunit A4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8125  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38638,124,586 - 38,124,646EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2153480 AgrOrtholog
Ensembl Genes ENSMUSG00000038600 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000039381 ENTREZGENE
  ENSMUSP00000039381.5 UniProtKB/Swiss-Prot
  ENSMUSP00000110558.2 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000040259 ENTREZGENE
  ENSMUST00000040259.8 UniProtKB/Swiss-Prot
  ENSMUST00000114908.5 UniProtKB/Swiss-Prot
InterPro V-ATPase_116kDa_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-type_ATPase_116kDa_su_euka UniProtKB/Swiss-Prot
KEGG Report mmu:140494 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2153480 ENTREZGENE
NCBI Gene 140494 ENTREZGENE
PANTHER PTHR11629 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE 116 KDA SUBUNIT A ISOFORM 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V_ATPase_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp6v0a4 PhenoGen
PIRSF ATP6V0A1 UniProtKB/Swiss-Prot
UniProt Q3TN88_MOUSE UniProtKB/TrEMBL
  Q3UP55 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZQM9_MOUSE UniProtKB/TrEMBL
  Q920B5 ENTREZGENE
  Q920R6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8CJ79 UniProtKB/Swiss-Prot
  Q920B5 UniProtKB/Swiss-Prot