Il21r (interleukin 21 receptor) - Rat Genome Database

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Gene: Il21r (interleukin 21 receptor) Mus musculus
Analyze
Symbol: Il21r
Name: interleukin 21 receptor
RGD ID: 1312688
MGI Page MGI
Description: Enables cytokine receptor activity. Acts upstream of or within cytokine-mediated signaling pathway. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Is expressed in lung; mandible; and orbito-sphenoid. Human ortholog(s) of this gene implicated in B-cell lymphoma (multiple); Crohn's disease; autoimmune disease (multiple); human immunodeficiency virus infectious disease; and immunodeficiency 56. Orthologous to human IL21R (interleukin 21 receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: IL-21 receptor; IL-21R; interleukin-21 receptor; LR-beta; lymphocyte receptor beta; NILR; novel cytokine receptor 8; novel interleukin receptor; NR8
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,202,424 - 125,232,742 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,202,601 - 125,232,742 (+)EnsemblGRCm39 Ensembl
GRCm387125,603,252 - 125,634,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7125,603,429 - 125,633,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv377132,746,943 - 132,777,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367125,394,625 - 125,424,718 (+)NCBIMGSCv36mm8
Celera7125,462,065 - 125,492,498 (+)NCBICelera
Cytogenetic Map7F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal CD4-positive T cell differentiation  (IAGP)
abnormal CD8-positive, alpha-beta T cell physiology  (IAGP)
abnormal dendritic cell physiology  (IAGP)
abnormal eye morphology  (IEA)
abnormal immune system morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal kidney morphology  (IEA)
abnormal Langerhans cell physiology  (IAGP)
abnormal leukocyte physiology  (IAGP)
abnormal lymph node germinal center morphology  (IAGP)
abnormal lymphocyte physiology  (IAGP)
abnormal memory T cell physiology  (IAGP)
abnormal NK cell physiology  (IAGP)
abnormal plasmacytoid dendritic cell physiology  (IAGP)
abnormal susceptibility to infection  (IAGP)
abnormal T cell activation  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal T-helper 1 physiology  (IAGP)
abnormal T-helper 2 physiology  (IAGP)
abnormal thymocyte activation  (IAGP)
decreased basophil cell number  (IAGP)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased cytotoxic T cell cytolysis  (IAGP)
decreased eosinophil cell number  (IAGP)
decreased granulocyte number  (IAGP)
decreased IgA level  (IAGP)
decreased IgE level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgG2a level  (IAGP)
decreased IgG2b level  (IAGP)
decreased IgG3 level  (IAGP)
decreased IgM level  (IAGP)
decreased interferon-gamma secretion  (IAGP)
decreased interleukin-13 secretion  (IAGP)
decreased interleukin-17 secretion  (IAGP)
decreased interleukin-21 secretion  (IAGP)
decreased interleukin-4 secretion  (IAGP)
decreased susceptibility to autoimmune diabetes  (IAGP)
decreased susceptibility to systemic lupus erythematosus  (IAGP)
decreased susceptibility to type IV hypersensitivity reaction  (IAGP)
decreased T cell proliferation  (IAGP)
enlarged kidney  (IEA)
granulomatous inflammation  (IAGP)
impaired eosinophil recruitment  (IAGP)
impaired natural killer cell mediated cytotoxicity  (IAGP)
increased circulating triglyceride level  (IEA)
increased exploration in new environment  (IEA)
increased IgE level  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. A critical role for IL-21 receptor signaling in the pathogenesis of systemic lupus erythematosus in BXSB-Yaa mice. Bubier JA, etal., Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1518-23. Epub 2009 Jan 21.
2. IL-21R on T cells is critical for sustained functionality and control of chronic viral infection. Frohlich A, etal., Science. 2009 Jun 19;324(5934):1576-80. Epub 2009 May 28.
3. Regulatory dendritic cells protect against allergic airway inflammation in a murine asthmatic model. Fujita S, etal., J Allergy Clin Immunol. 2008 Jan;121(1):95-104.e7. Epub 2007 Oct 17.
4. Critical role of IL-21 in modulating TH17 and regulatory T cells in Behcet disease. Geri G, etal., J Allergy Clin Immunol. 2011 Sep;128(3):655-64. Epub 2011 Jul 2.
5. Abrogation of donor T-cell IL-21 signaling leads to tissue-specific modulation of immunity and separation of GVHD from GVL. Hanash AM, etal., Blood. 2011 Jul 14;118(2):446-55. Epub 2011 May 19.
6. A positive feedback loop of IL-21 signaling provoked by homeostatic CD4+CD25- T cell expansion is essential for the development of arthritis in autoimmune K/BxN mice. Jang E, etal., J Immunol. 2009 Apr 15;182(8):4649-56.
7. IL-21R is essential for epicutaneous sensitization and allergic skin inflammation in humans and mice. Jin H, etal., J Clin Invest. 2009 Jan;119(1):47-60. doi: 10.1172/JCI32310. Epub 2008 Dec 15.
8. Upregulated IL-21 and IL-21 receptor expression is involved in experimental autoimmune uveitis (EAU). Liu L, etal., Mol Vis. 2009 Dec 31;15:2938-44.
9. IL-21 receptor expression determines the temporal phases of experimental autoimmune encephalomyelitis. Liu R, etal., Exp Neurol. 2008 May;211(1):14-24. Epub 2007 Nov 22.
10. Il-21 enhances NK cell activation and cytolytic activity and induces Th17 cell differentiation in inflammatory bowel disease. Liu Z, etal., Inflamm Bowel Dis. 2009 Aug;15(8):1133-44.
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. MGD IEA MGD IEA
13. Genome-wide methylation profiling in Crohn's disease identifies altered epigenetic regulation of key host defense mechanisms including the Th17 pathway. Nimmo ER, etal., Inflamm Bowel Dis. 2012 May;18(5):889-99. doi: 10.1002/ibd.21912. Epub 2011 Oct 21.
14. RGMA and IL21R show association with experimental inflammation and multiple sclerosis. Nohra R, etal., Genes Immun. 2010 Jun;11(4):279-93. Epub 2010 Jan 14.
15. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
16. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
17. Mouse MP Annotation Import Pipeline RGD automated import pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Immune activation and increased IL-21R expression are associated with the loss of memory B cells during HIV-1 infection. Ruffin N, etal., J Intern Med. 2012 Apr 24. doi: 10.1111/j.1365-2796.2012.02550.x.
21. Screening of functional and positional candidate genes in families with common variable immunodeficiency. Salzer U, etal., BMC Immunol. 2008 Feb 7;9:3.
22. IL-21 and IL-21R are not required for development of Th17 cells and autoimmunity in vivo. Sonderegger I, etal., Eur J Immunol. 2008 Jul;38(7):1833-8.
23. IL-21 promotes the pathologic immune response to pneumovirus infection. Spolski R, etal., J Immunol. 2012 Feb 15;188(4):1924-32. Epub 2012 Jan 11.
24. Interleukin-21 is required for the development of type 1 diabetes in NOD mice. Sutherland AP, etal., Diabetes. 2009 May;58(5):1144-55. Epub 2009 Feb 10.
25. Interleukin-21 modulates Th1 and Th17 responses in giant cell arteritis. Terrier B, etal., Arthritis Rheum. 2012 Jun;64(6):2001-11. doi: 10.1002/art.34327. Epub 2011 Dec 6.
26. IL-21 and IL-21 receptor expression in lymphocytes and neurons in multiple sclerosis brain. Tzartos JS, etal., Am J Pathol. 2011 Feb;178(2):794-802.
27. The gene for interleukin-21 receptor is the partner of BCL6 in t(3;16)(q27;p11), which is recurrently observed in diffuse large B-cell lymphoma. Ueda C, etal., Oncogene. 2002 Jan 17;21(3):368-76.
28. In vitro potency, pharmacokinetic profiles, and pharmacological activity of optimized anti-IL-21R antibodies in a mouse model of lupus. Vugmeyster Y, etal., MAbs. 2010 May-Jun;2(3):335-46. Epub 2010 May 23.
29. Key role for IL-21 in experimental autoimmune uveitis. Wang L, etal., Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9542-7. Epub 2011 May 18.
30. A polymorphism within IL21R confers risk for systemic lupus erythematosus. Webb R, etal., Arthritis Rheum. 2009 Aug;60(8):2402-7.
Additional References at PubMed
PMID:10349636   PMID:11016959   PMID:11042159   PMID:11076861   PMID:11081504   PMID:11217851   PMID:11970879   PMID:12093291   PMID:12150892   PMID:12446913   PMID:12466851   PMID:12477932  
PMID:15210829   PMID:15630141   PMID:16141072   PMID:16141073   PMID:16621990   PMID:16778988   PMID:17015680   PMID:17048986   PMID:17077330   PMID:17339481   PMID:17581537   PMID:17581588  
PMID:17911475   PMID:18276844   PMID:18474630   PMID:18490706   PMID:18602282   PMID:18773086   PMID:18779574   PMID:19168593   PMID:19234181   PMID:19423777   PMID:19443735   PMID:19570826  
PMID:19841075   PMID:19843883   PMID:19915059   PMID:20042469   PMID:20142429   PMID:20142430   PMID:20368279   PMID:20435882   PMID:20574002   PMID:20660710   PMID:20676095   PMID:20826721  
PMID:20844201   PMID:20926797   PMID:20971950   PMID:21061439   PMID:21169545   PMID:21257966   PMID:21267068   PMID:21270405   PMID:21297642   PMID:21357471   PMID:21393863   PMID:21430229  
PMID:21511186   PMID:21518858   PMID:21590767   PMID:21708925   PMID:21873635   PMID:21964024   PMID:22013017   PMID:22120118   PMID:22177922   PMID:22231702   PMID:22345665   PMID:22442347  
PMID:22465422   PMID:22579473   PMID:22723520   PMID:23045607   PMID:23064231   PMID:23125412   PMID:23275601   PMID:23453633   PMID:23479229   PMID:23516660   PMID:23569233   PMID:23637417  
PMID:23661644   PMID:23696736   PMID:23804710   PMID:23960240   PMID:23995234   PMID:24078696   PMID:24358128   PMID:24446516   PMID:24470500   PMID:24489092   PMID:24757141   PMID:24820310  
PMID:24973819   PMID:25373907   PMID:25545680   PMID:25763578   PMID:25838422   PMID:25849970   PMID:25875847   PMID:25941359   PMID:26269257   PMID:26287681   PMID:26363366   PMID:26413871  
PMID:26597007   PMID:26744522   PMID:26762709   PMID:27400126   PMID:27566940   PMID:27695002   PMID:27861835   PMID:27927647   PMID:28158305   PMID:28303891   PMID:28550395   PMID:28855309  
PMID:28978474   PMID:29018172   PMID:29220875   PMID:29549115   PMID:29925696   PMID:30266981   PMID:30446568   PMID:30654048   PMID:30733420   PMID:30969166   PMID:31341076   PMID:31379876  
PMID:31653894   PMID:32130409   PMID:32859726   PMID:34433045   PMID:34721405   PMID:34852236   PMID:35008699   PMID:35693111   PMID:35896116  


Genomics

Comparative Map Data
Il21r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,202,424 - 125,232,742 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,202,601 - 125,232,742 (+)EnsemblGRCm39 Ensembl
GRCm387125,603,252 - 125,634,397 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7125,603,429 - 125,633,570 (+)EnsemblGRCm38mm10GRCm38
MGSCv377132,746,943 - 132,777,084 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367125,394,625 - 125,424,718 (+)NCBIMGSCv36mm8
Celera7125,462,065 - 125,492,498 (+)NCBICelera
Cytogenetic Map7F3NCBI
IL21R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381627,402,174 - 27,452,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1627,402,174 - 27,452,042 (+)EnsemblGRCh38hg38GRCh38
GRCh371627,413,495 - 27,463,363 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361627,321,224 - 27,369,616 (+)NCBINCBI36Build 36hg18NCBI36
Build 341627,321,923 - 27,369,616NCBI
Celera1626,190,799 - 26,240,689 (+)NCBICelera
Cytogenetic Map16p12.1NCBI
HuRef1625,501,903 - 25,551,799 (+)NCBIHuRef
CHM1_11628,425,032 - 28,475,081 (+)NCBICHM1_1
T2T-CHM13v2.01627,680,921 - 27,730,794 (+)NCBIT2T-CHM13v2.0
Il21r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21180,168,028 - 180,195,690 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,168,097 - 180,195,522 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1188,504,931 - 188,532,715 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01195,690,963 - 195,718,760 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01188,374,105 - 188,401,804 (+)NCBIRnor_WKY
Rnor_6.01196,996,405 - 197,024,185 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1196,996,581 - 197,024,166 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01203,980,627 - 204,008,648 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41184,665,737 - 184,693,583 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11184,815,617 - 184,843,462 (+)NCBI
Celera1177,837,561 - 177,865,054 (+)NCBICelera
Cytogenetic Map1q36NCBI
Il21r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554935,613,564 - 5,650,583 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554935,613,704 - 5,646,692 (+)NCBIChiLan1.0ChiLan1.0
IL21R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11627,774,864 - 27,821,769 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1627,774,864 - 27,821,769 (+)Ensemblpanpan1.1panPan2
IL21R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1619,181,846 - 19,217,915 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl619,182,071 - 19,217,931 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha620,760,615 - 20,796,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0619,321,734 - 19,357,467 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl619,321,718 - 19,357,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1619,119,564 - 19,155,747 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0619,033,216 - 19,068,970 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0619,379,434 - 19,415,204 (-)NCBIUU_Cfam_GSD_1.0
Il21r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344122,984,094 - 123,014,575 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,100,170 - 11,110,744 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493650111,100,170 - 11,112,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IL21R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl319,443,359 - 19,489,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1319,447,488 - 19,489,201 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2319,681,475 - 19,697,842 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IL21R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1525,105,947 - 25,153,914 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl525,106,519 - 25,153,703 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660684,543,066 - 4,590,469 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Il21r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,057,651 - 12,068,650 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,037,338 - 12,070,479 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:169
Interacting mature miRNAs:174
Transcripts:ENSMUST00000033000
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse

Markers in Region
D7Mit101  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387125,633,039 - 125,633,127UniSTSGRCm38
MGSCv377132,776,553 - 132,776,641UniSTSGRCm37
Cytogenetic Map7F4UniSTS
cM Map760.0UniSTS
Whitehead Genetic745.9UniSTS
Whitehead/MRC_RH71284.76UniSTS
Whitehead_YAC7 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_021887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006508098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB049137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF254068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF269134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF279436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF477982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF477983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF477984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF477985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF477986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB634399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS450758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB702451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HB976768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC005885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC202965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC203226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC686705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000033000   ⟹   ENSMUSP00000033000
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,202,709 - 125,232,742 (+)Ensembl
GRCm38.p6 Ensembl7125,603,537 - 125,633,570 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206103   ⟹   ENSMUSP00000145966
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,202,666 - 125,232,444 (+)Ensembl
GRCm38.p6 Ensembl7125,603,494 - 125,633,272 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206234   ⟹   ENSMUSP00000145772
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,202,601 - 125,230,678 (+)Ensembl
GRCm38.p6 Ensembl7125,603,429 - 125,631,506 (+)Ensembl
RefSeq Acc Id: NM_021887   ⟹   NP_068687
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,202,601 - 125,232,742 (+)NCBI
GRCm387125,603,429 - 125,633,570 (+)NCBI
MGSCv377132,746,943 - 132,777,084 (+)RGD
Celera7125,462,065 - 125,492,498 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006508097   ⟹   XP_006508160
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,202,424 - 125,232,518 (+)NCBI
GRCm387125,603,252 - 125,634,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006508098   ⟹   XP_006508161
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,222,040 - 125,232,518 (+)NCBI
GRCm387125,622,868 - 125,634,397 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153309   ⟹   XP_036009202
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,202,427 - 125,231,580 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153310   ⟹   XP_036009203
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,202,429 - 125,232,518 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_068687 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508160 (Get FASTA)   NCBI Sequence Viewer  
  XP_006508161 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009202 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009203 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF86350 (Get FASTA)   NCBI Sequence Viewer  
  AAG23420 (Get FASTA)   NCBI Sequence Viewer  
  AAG29347 (Get FASTA)   NCBI Sequence Viewer  
  AAH57861 (Get FASTA)   NCBI Sequence Viewer  
  AAL82632 (Get FASTA)   NCBI Sequence Viewer  
  AAL82633 (Get FASTA)   NCBI Sequence Viewer  
  AAL82634 (Get FASTA)   NCBI Sequence Viewer  
  AAL82635 (Get FASTA)   NCBI Sequence Viewer  
  AAL82636 (Get FASTA)   NCBI Sequence Viewer  
  BAB13736 (Get FASTA)   NCBI Sequence Viewer  
  BAE29886 (Get FASTA)   NCBI Sequence Viewer  
  BAE42685 (Get FASTA)   NCBI Sequence Viewer  
  BAE42787 (Get FASTA)   NCBI Sequence Viewer  
  CAL81202 (Get FASTA)   NCBI Sequence Viewer  
  CAS03337 (Get FASTA)   NCBI Sequence Viewer  
  CBE74750 (Get FASTA)   NCBI Sequence Viewer  
  CBG76754 (Get FASTA)   NCBI Sequence Viewer  
  CBI85468 (Get FASTA)   NCBI Sequence Viewer  
  CBI85471 (Get FASTA)   NCBI Sequence Viewer  
  CBL93961 (Get FASTA)   NCBI Sequence Viewer  
  EDL17325 (Get FASTA)   NCBI Sequence Viewer  
  EDL17326 (Get FASTA)   NCBI Sequence Viewer  
  EDL17327 (Get FASTA)   NCBI Sequence Viewer  
  Q9JHX3 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_068687   ⟸   NM_021887
- Peptide Label: precursor
- UniProtKB: Q9ESM1 (UniProtKB/Swiss-Prot),   Q9JHX3 (UniProtKB/Swiss-Prot),   Q3TAI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006508160   ⟸   XM_006508097
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006508161   ⟸   XM_006508098
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000145966   ⟸   ENSMUST00000206103
RefSeq Acc Id: ENSMUSP00000145772   ⟸   ENSMUST00000206234
RefSeq Acc Id: ENSMUSP00000033000   ⟸   ENSMUST00000033000
RefSeq Acc Id: XP_036009202   ⟸   XM_036153309
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036009203   ⟸   XM_036153310
- Peptide Label: isoform X4
- UniProtKB: Q6PEU8 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JHX3-F1-model_v2 AlphaFold Q9JHX3 1-529 view protein structure

Promoters
RGD ID:8665505
Promoter ID:EPDNEW_M10784
Type:initiation region
Name:Il21r_1
Description:Mus musculus interleukin 21 receptor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387125,603,461 - 125,603,521EPDNEW
RGD ID:6841355
Promoter ID:MM_KWN:52639
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung,   Spleen
Transcripts:ENSMUST00000084605,   NM_021887,   UC009JQE.1,   UC009JQG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367132,746,774 - 132,747,274 (+)MPROMDB
RGD ID:6848152
Promoter ID:MM_ACW:46031
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Spleen
Transcripts:IL21R.CSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367132,773,771 - 132,774,271 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890475 AgrOrtholog
Ensembl Genes ENSMUSG00000030745 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000033000 ENTREZGENE
  ENSMUSP00000033000.7 UniProtKB/Swiss-Prot
  ENSMUSP00000145772.2 UniProtKB/TrEMBL
  ENSMUSP00000145966 ENTREZGENE
  ENSMUSP00000145966.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000033000 ENTREZGENE
  ENSMUST00000033000.8 UniProtKB/Swiss-Prot
  ENSMUST00000206103 ENTREZGENE
  ENSMUST00000206103.2 UniProtKB/TrEMBL
  ENSMUST00000206234.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FN3_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hempt_rcpt_S_F1_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:60504 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890475 ENTREZGENE
NCBI Gene 60504 ENTREZGENE
PANTHER CYTOKINE RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTERLEUKIN-21 RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Il21r PhenoGen
PROSITE FN3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HEMATOPO_REC_S_F1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RP02_MOUSE UniProtKB/TrEMBL
  IL21R_MOUSE UniProtKB/Swiss-Prot
  Q3TA82_MOUSE UniProtKB/TrEMBL
  Q3TAI3 ENTREZGENE, UniProtKB/TrEMBL
  Q3UBS8_MOUSE UniProtKB/TrEMBL
  Q6PEU8 ENTREZGENE, UniProtKB/TrEMBL
  Q9ESM1 ENTREZGENE
  Q9JHX3 ENTREZGENE
UniProt Secondary Q9ESM1 UniProtKB/Swiss-Prot