MRPL42 (mitochondrial ribosomal protein L42) - Rat Genome Database

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Gene: MRPL42 (mitochondrial ribosomal protein L42) Homo sapiens
Analyze
Symbol: MRPL42
Name: mitochondrial ribosomal protein L42
RGD ID: 1312629
HGNC Page HGNC:14493
Description: Enables RNA binding activity. Predicted to be involved in mitochondrial translation. Located in mitochondrion and plasma membrane. Part of mitochondrial large ribosomal subunit and mitochondrial small ribosomal subunit.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 28S ribosomal protein S32, mitochondrial; 39S ribosomal protein L31, mitochondrial; 39S ribosomal protein L42, mitochondrial; HSPC204; L31MT; L42MT; large ribosomal subunit protein mL42; mitochondrial large ribosomal subunit protein mL42; mitochondrial ribosomal protein L31; mitochondrial ribosomal protein S32; mL42; MRP-L31; MRP-L42; MRP-S32; MRPL31; MRPS32; PTD007; RPML31; S32MT
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: MRPL42P1   MRPL42P2   MRPL42P3   MRPL42P4   MRPL42P5   MRPL42P6  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381293,467,514 - 93,516,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1293,467,514 - 93,516,214 (+)EnsemblGRCh38hg38GRCh38
GRCh371293,861,290 - 93,909,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361292,385,401 - 92,420,563 (+)NCBINCBI36Build 36hg18NCBI36
Build 341292,363,737 - 92,398,899NCBI
Celera1293,531,961 - 93,567,117 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1290,927,952 - 90,964,628 (+)NCBIHuRef
CHM1_11293,826,218 - 93,862,501 (+)NCBICHM1_1
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The small subunit of the mammalian mitochondrial ribosome. Identification of the full complement of ribosomal proteins present. Cavdar Koc E, etal., J Biol Chem 2001 Jun 1;276(22):19363-74. Epub 2001 Mar 02.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:8889549   PMID:11042152   PMID:11230166   PMID:11543634   PMID:11551941   PMID:12477932   PMID:12706105   PMID:14702039   PMID:15489334   PMID:16169070   PMID:16344560  
PMID:18029348   PMID:18391951   PMID:20546612   PMID:20877624   PMID:21873635   PMID:22190034   PMID:22658674   PMID:22939629   PMID:25278503   PMID:26107902   PMID:26186194   PMID:26496610  
PMID:27023846   PMID:28514442   PMID:28611215   PMID:28892042   PMID:28986522   PMID:29395067   PMID:29531015   PMID:29568061   PMID:30033366   PMID:31871319   PMID:31980649   PMID:32513696  
PMID:32877691   PMID:33961781   PMID:34079125   PMID:34373451   PMID:34800366   PMID:35013218   PMID:35235311   PMID:35271311   PMID:35944360   PMID:36537216   PMID:37071682   PMID:37267103  


Genomics

Comparative Map Data
MRPL42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381293,467,514 - 93,516,214 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1293,467,514 - 93,516,214 (+)EnsemblGRCh38hg38GRCh38
GRCh371293,861,290 - 93,909,990 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361292,385,401 - 92,420,563 (+)NCBINCBI36Build 36hg18NCBI36
Build 341292,363,737 - 92,398,899NCBI
Celera1293,531,961 - 93,567,117 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1290,927,952 - 90,964,628 (+)NCBIHuRef
CHM1_11293,826,218 - 93,862,501 (+)NCBICHM1_1
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBIT2T-CHM13v2.0
Mrpl42
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391095,316,667 - 95,337,811 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1095,316,667 - 95,337,802 (-)EnsemblGRCm39 Ensembl
GRCm381095,480,805 - 95,501,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1095,480,805 - 95,501,940 (-)EnsemblGRCm38mm10GRCm38
MGSCv371094,943,440 - 94,964,561 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361094,910,494 - 94,931,615 (-)NCBIMGSCv36mm8
Celera1097,456,195 - 97,477,708 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.39NCBI
Mrpl42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8732,004,863 - 32,028,640 (-)NCBIGRCr8
mRatBN7.2730,117,977 - 30,141,757 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl730,117,977 - 30,141,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx732,104,611 - 32,128,266 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0734,278,451 - 34,302,008 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0734,053,543 - 34,076,777 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0736,573,654 - 36,597,497 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl736,573,654 - 36,597,462 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0736,638,838 - 36,661,936 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4732,683,441 - 32,707,184NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera727,191,303 - 27,214,880 (-)NCBICelera
Cytogenetic Map7q13NCBI
Mrpl42
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,287,128 - 30,311,230 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540530,287,124 - 30,311,175 (+)NCBIChiLan1.0ChiLan1.0
MRPL42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210101,509,655 - 101,561,714 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112101,506,037 - 101,558,091 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01291,009,591 - 91,056,619 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11294,412,398 - 94,447,500 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1294,412,398 - 94,447,500 (+)Ensemblpanpan1.1panPan2
MRPL42
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11533,701,938 - 33,732,885 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1534,152,554 - 34,183,481 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01534,372,489 - 34,403,465 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1534,372,539 - 34,403,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11533,651,033 - 33,681,957 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01533,740,289 - 33,771,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,004,648 - 34,035,614 (+)NCBIUU_Cfam_GSD_1.0
Mrpl42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494526,223,316 - 26,314,791 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365079,920,683 - 9,946,372 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365079,920,709 - 9,943,065 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL42
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl589,625,133 - 89,661,670 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1589,631,613 - 89,661,775 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,584,607 - 93,601,424 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11188,867,819 - 88,903,683 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1188,867,877 - 88,901,091 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037156,259,891 - 156,294,749 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl42
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475013,402,953 - 13,421,094 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL42
14 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q22(chr12:93374113-94267175)x3 copy number gain See cases [RCV000134720] Chr12:93374113..94267175 [GRCh38]
Chr12:93767889..94660951 [GRCh37]
Chr12:92292020..93185082 [NCBI36]
Chr12:12q22
uncertain significance
GRCh38/hg38 12q21.33-22(chr12:90996508-94872818)x1 copy number loss See cases [RCV000138659] Chr12:90996508..94872818 [GRCh38]
Chr12:91390285..95266594 [GRCh37]
Chr12:89914416..93790725 [NCBI36]
Chr12:12q21.33-22
likely pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q21.33-24.11(chr12:91044318-109133210)x3 copy number gain See cases [RCV000142447] Chr12:91044318..109133210 [GRCh38]
Chr12:91438095..109571015 [GRCh37]
Chr12:89962226..108055398 [NCBI36]
Chr12:12q21.33-24.11
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q21.33-22(chr12:91621655-96014946)x1 copy number loss not provided [RCV000737994] Chr12:91621655..96014946 [GRCh37]
Chr12:12q21.33-22
uncertain significance
NM_014050.4(MRPL42):c.245A>G (p.His82Arg) single nucleotide variant not specified [RCV004298021] Chr12:93487522 [GRCh38]
Chr12:93881298 [GRCh37]
Chr12:12q22
uncertain significance
GRCh37/hg19 12q21.2-22(chr12:77737623-94330526)x1 copy number loss not provided [RCV000848027] Chr12:77737623..94330526 [GRCh37]
Chr12:12q21.2-22
pathogenic
NM_014050.4(MRPL42):c.241G>A (p.Val81Met) single nucleotide variant not specified [RCV004143296] Chr12:93487518 [GRCh38]
Chr12:93881294 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.397C>T (p.Arg133Cys) single nucleotide variant not specified [RCV004098777] Chr12:93501189 [GRCh38]
Chr12:93894965 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.404A>T (p.Asn135Ile) single nucleotide variant not specified [RCV004130131] Chr12:93501196 [GRCh38]
Chr12:93894972 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.71A>G (p.Asn24Ser) single nucleotide variant not specified [RCV004135347] Chr12:93476954 [GRCh38]
Chr12:93870730 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.160G>C (p.Asp54His) single nucleotide variant not specified [RCV004229028] Chr12:93479413 [GRCh38]
Chr12:93873189 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.104C>T (p.Thr35Met) single nucleotide variant not specified [RCV004342091] Chr12:93476987 [GRCh38]
Chr12:93870763 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.418A>G (p.Lys140Glu) single nucleotide variant not specified [RCV004352118] Chr12:93501210 [GRCh38]
Chr12:93894986 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.164G>A (p.Gly55Asp) single nucleotide variant not specified [RCV004497724] Chr12:93479417 [GRCh38]
Chr12:93873193 [GRCh37]
Chr12:12q22
uncertain significance
NM_014050.4(MRPL42):c.139G>A (p.Val47Ile) single nucleotide variant not specified [RCV004497715] Chr12:93479392 [GRCh38]
Chr12:93873168 [GRCh37]
Chr12:12q22
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2815
Count of miRNA genes:777
Interacting mature miRNAs:868
Transcripts:ENST00000358678, ENST00000361630, ENST00000393128, ENST00000547098, ENST00000548545, ENST00000549561, ENST00000549982, ENST00000551396, ENST00000552217, ENST00000552326, ENST00000552938
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
597019670GWAS1115744_Hpeanut allergy measurement, parental genotype effect measurement QTL GWAS1115744 (human)0.000009peanut allergy measurement, parental genotype effect measurement129349476393494764Human
597068208GWAS1164282_Hplatelet count QTL GWAS1164282 (human)2e-08platelet quantity (VT:0003179)platelet count (CMO:0000029)129348936393489364Human
596975742GWAS1095261_Hbody height QTL GWAS1095261 (human)3e-09body height (VT:0001253)body height (CMO:0000106)129347198593471986Human
597498320GWAS1594394_Hlean body mass QTL GWAS1594394 (human)2e-09body lean mass (VT:0010483)total body lean mass (CMO:0003950)129350575193505752Human
597351476GWAS1447550_Hbody height QTL GWAS1447550 (human)8e-12body height (VT:0001253)body height (CMO:0000106)129347981593479816Human
597133479GWAS1229553_Hbody height QTL GWAS1229553 (human)8e-18body height (VT:0001253)body height (CMO:0000106)129346867893468679Human
597305769GWAS1401843_Hbody height QTL GWAS1401843 (human)3e-09body height (VT:0001253)body height (CMO:0000106)129347198593471986Human
597431499GWAS1527573_Hplatelet count QTL GWAS1527573 (human)2e-18platelet quantity (VT:0003179)platelet count (CMO:0000029)129350945293509453Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
597351235GWAS1447309_Hbody height QTL GWAS1447309 (human)2e-124body height (VT:0001253)body height (CMO:0000106)129347868693478687Human
597376166GWAS1472240_Hplatelet count QTL GWAS1472240 (human)2e-26platelet quantity (VT:0003179)platelet count (CMO:0000029)129350945293509453Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human

Markers in Region
RH99326  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371293,895,985 - 93,896,105UniSTSGRCh37
Build 361292,420,116 - 92,420,236RGDNCBI36
Celera1293,566,670 - 93,566,790RGD
Cytogenetic Map12q22UniSTS
HuRef1290,963,069 - 90,963,189UniSTS
GeneMap99-GB4 RH Map12358.83UniSTS
G64438  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371293,869,267 - 93,869,367UniSTSGRCh37
Build 361292,393,398 - 92,393,498RGDNCBI36
Celera1293,539,958 - 93,540,058RGD
Cytogenetic Map12q22UniSTS
HuRef1290,935,945 - 90,936,045UniSTS
MRPL42_932.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371293,895,491 - 93,896,361UniSTSGRCh37
Build 361292,419,622 - 92,420,492RGDNCBI36
Celera1293,566,176 - 93,567,046RGD
HuRef1290,962,327 - 90,963,445UniSTS
SHGC-56874  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371293,895,239 - 93,895,564UniSTSGRCh37
Build 361292,419,370 - 92,419,695RGDNCBI36
Celera1293,565,924 - 93,566,249RGD
Cytogenetic Map12q22UniSTS
HuRef1290,962,075 - 90,962,400UniSTS
TNG Radiation Hybrid Map1245190.0UniSTS
D15S1390  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map10q23.2UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map7p13UniSTS
STS-N40939  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map12q22UniSTS
GeneMap99-GB4 RH Map3557.64UniSTS
NCBI RH Map31323.8UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_014050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_038161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA211087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB051626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC025260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF078860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF135160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF151038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM147739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM726733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU561400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD385500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR533495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR749344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB195199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000358678   ⟹   ENSP00000351506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,518 - 93,502,661 (+)Ensembl
Ensembl Acc Id: ENST00000393128   ⟹   ENSP00000376836
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,517 - 93,502,652 (+)Ensembl
Ensembl Acc Id: ENST00000547098   ⟹   ENSP00000473798
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,518 - 93,488,472 (+)Ensembl
Ensembl Acc Id: ENST00000548545   ⟹   ENSP00000473958
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,469,214 - 93,487,897 (+)Ensembl
Ensembl Acc Id: ENST00000549561   ⟹   ENSP00000449392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,469,189 - 93,502,864 (+)Ensembl
Ensembl Acc Id: ENST00000549982   ⟹   ENSP00000449884
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,514 - 93,516,214 (+)Ensembl
Ensembl Acc Id: ENST00000551396   ⟹   ENSP00000449886
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,540 - 93,501,385 (+)Ensembl
Ensembl Acc Id: ENST00000552217   ⟹   ENSP00000447547
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,514 - 93,516,214 (+)Ensembl
Ensembl Acc Id: ENST00000552326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,467,517 - 93,501,291 (+)Ensembl
Ensembl Acc Id: ENST00000552938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1293,500,747 - 93,502,621 (+)Ensembl
RefSeq Acc Id: NM_014050   ⟹   NP_054769
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,514 - 93,516,214 (+)NCBI
GRCh371293,861,266 - 93,897,548 (+)ENTREZGENE
Build 361292,385,401 - 92,420,563 (+)NCBI Archive
Celera1293,531,961 - 93,567,117 (+)RGD
HuRef1290,927,952 - 90,964,628 (+)ENTREZGENE
CHM1_11293,826,218 - 93,862,501 (+)NCBI
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172177   ⟹   NP_751917
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,514 - 93,516,214 (+)NCBI
GRCh371293,861,266 - 93,897,548 (+)ENTREZGENE
Build 361292,385,401 - 92,420,563 (+)NCBI Archive
Celera1293,531,961 - 93,567,117 (+)RGD
HuRef1290,927,952 - 90,964,628 (+)ENTREZGENE
CHM1_11293,826,218 - 93,862,501 (+)NCBI
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038159
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,514 - 93,516,214 (+)NCBI
GRCh371293,861,266 - 93,897,548 (+)ENTREZGENE
HuRef1290,927,952 - 90,964,628 (+)ENTREZGENE
CHM1_11293,826,218 - 93,862,501 (+)NCBI
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038160
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,514 - 93,516,214 (+)NCBI
GRCh371293,861,266 - 93,897,548 (+)ENTREZGENE
HuRef1290,927,952 - 90,964,628 (+)ENTREZGENE
CHM1_11293,826,218 - 93,862,501 (+)NCBI
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBI
Sequence:
RefSeq Acc Id: NR_038161
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,514 - 93,516,214 (+)NCBI
GRCh371293,861,266 - 93,897,548 (+)ENTREZGENE
HuRef1290,927,952 - 90,964,628 (+)ENTREZGENE
CHM1_11293,826,218 - 93,862,501 (+)NCBI
T2T-CHM13v2.01293,448,482 - 93,497,696 (+)NCBI
Sequence:
RefSeq Acc Id: NP_751917   ⟸   NM_172177
- Peptide Label: precursor
- UniProtKB: Q9Y6G3 (UniProtKB/Swiss-Prot),   Q96Q48 (UniProtKB/Swiss-Prot),   Q6FID1 (UniProtKB/Swiss-Prot),   Q9P0S1 (UniProtKB/Swiss-Prot),   J3KPP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_054769   ⟸   NM_014050
- Peptide Label: precursor
- UniProtKB: Q9Y6G3 (UniProtKB/Swiss-Prot),   Q96Q48 (UniProtKB/Swiss-Prot),   Q6FID1 (UniProtKB/Swiss-Prot),   Q9P0S1 (UniProtKB/Swiss-Prot),   J3KPP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000473798   ⟸   ENST00000547098
Ensembl Acc Id: ENSP00000473958   ⟸   ENST00000548545
Ensembl Acc Id: ENSP00000449884   ⟸   ENST00000549982
Ensembl Acc Id: ENSP00000449392   ⟸   ENST00000549561
Ensembl Acc Id: ENSP00000376836   ⟸   ENST00000393128
Ensembl Acc Id: ENSP00000449886   ⟸   ENST00000551396
Ensembl Acc Id: ENSP00000447547   ⟸   ENST00000552217
Ensembl Acc Id: ENSP00000351506   ⟸   ENST00000358678

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6G3-F1-model_v2 AlphaFold Q9Y6G3 1-142 view protein structure

Promoters
RGD ID:6789987
Promoter ID:HG_KWN:16327
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000393126,   ENST00000393128,   NM_172177,   NM_172178,   UC001TCT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361292,385,261 - 92,385,761 (+)MPROMDB
RGD ID:6852246
Promoter ID:EP73929
Type:single initiation site
Name:HS_MRPL42
Description:Mitochondrial ribosomal protein L42.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 361292,385,424 - 92,385,484EPD
RGD ID:7225009
Promoter ID:EPDNEW_H18250
Type:initiation region
Name:MRPL42_1
Description:mitochondrial ribosomal protein L42
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381293,467,517 - 93,467,577EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:14493 AgrOrtholog
COSMIC MRPL42 COSMIC
Ensembl Genes ENSG00000198015 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000358678.7 UniProtKB/TrEMBL
  ENST00000393128.8 UniProtKB/TrEMBL
  ENST00000547098.5 UniProtKB/TrEMBL
  ENST00000548545.1 UniProtKB/TrEMBL
  ENST00000549561.6 UniProtKB/Swiss-Prot
  ENST00000549982 ENTREZGENE
  ENST00000549982.6 UniProtKB/Swiss-Prot
  ENST00000551396.5 UniProtKB/TrEMBL
  ENST00000552217 ENTREZGENE
  ENST00000552217.6 UniProtKB/Swiss-Prot
GTEx ENSG00000198015 GTEx
HGNC ID HGNC:14493 ENTREZGENE
Human Proteome Map MRPL42 Human Proteome Map
InterPro MRPL42 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
KEGG Report hsa:28977 UniProtKB/Swiss-Prot
NCBI Gene 28977 ENTREZGENE
OMIM 611847 OMIM
PANTHER 39S RIBOSOMAL PROTEIN L42, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MRP-S32 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA30974 PharmGKB
UniProt F8VVR0_HUMAN UniProtKB/TrEMBL
  J3KP21_HUMAN UniProtKB/TrEMBL
  J3KPP0 ENTREZGENE, UniProtKB/TrEMBL
  Q6FID1 ENTREZGENE
  Q96Q48 ENTREZGENE
  Q9P0S1 ENTREZGENE
  Q9Y6G3 ENTREZGENE, UniProtKB/Swiss-Prot
  S4R2Z7_HUMAN UniProtKB/TrEMBL
  S4R360_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q6FID1 UniProtKB/Swiss-Prot
  Q96Q48 UniProtKB/Swiss-Prot
  Q9P0S1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-15 MRPL42  mitochondrial ribosomal protein L42  MRPL31  mitochondrial ribosomal protein L31  Data merged from RGD:1350315 737654 PROVISIONAL