TMC4 (transmembrane channel like 4) - Rat Genome Database

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Gene: TMC4 (transmembrane channel like 4) Homo sapiens
Analyze
Symbol: TMC4
Name: transmembrane channel like 4
RGD ID: 1312473
HGNC Page HGNC:22998
Description: Enables voltage-gated chloride channel activity. Predicted to be involved in sensory perception of salty taste. Located in extracellular exosome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC39329; testicular tissue protein Li 204; transmembrane channel-like 4; transmembrane channel-like protein 4; voltage-gated chloride channel TMC4
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,160,108 - 54,173,160 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,160,108 - 54,173,250 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,663,846 - 54,676,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,355,658 - 59,368,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 341959,355,658 - 59,368,664NCBI
Celera1951,705,119 - 51,718,235 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,980,131 - 50,993,068 (-)NCBIHuRef
CHM1_11954,665,114 - 54,678,269 (-)NCBICHM1_1
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12812529   PMID:12906855   PMID:16341674   PMID:17567994   PMID:21873635   PMID:23533145   PMID:24816252   PMID:26850495   PMID:29572551   PMID:30631154  
PMID:32296183   PMID:33961781   PMID:34429071   PMID:34468713  


Genomics

Comparative Map Data
TMC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,160,108 - 54,173,160 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,160,108 - 54,173,250 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,663,846 - 54,676,854 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,355,658 - 59,368,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 341959,355,658 - 59,368,664NCBI
Celera1951,705,119 - 51,718,235 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,980,131 - 50,993,068 (-)NCBIHuRef
CHM1_11954,665,114 - 54,678,269 (-)NCBICHM1_1
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBIT2T-CHM13v2.0
Tmc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,668,790 - 3,680,522 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,668,789 - 3,680,552 (-)EnsemblGRCm39 Ensembl
GRCm3873,665,754 - 3,677,553 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,665,790 - 3,677,553 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,617,356 - 3,629,155 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,268,877 - 3,280,599 (-)NCBIMGSCv36mm8
Celera73,577,673 - 3,589,680 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.11NCBI
Tmc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,455,135 - 74,467,043 (+)NCBIGRCr8
mRatBN7.2165,539,777 - 65,551,683 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,539,721 - 65,551,677 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx170,987,931 - 70,999,807 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0179,410,873 - 79,422,781 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0172,738,241 - 72,749,926 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0164,114,687 - 64,126,576 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,046,377 - 64,126,611 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,038,642 - 63,074,292 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,852,716 - 63,864,605 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,929,490 - 63,941,352 (+)NCBI
Celera163,264,866 - 63,276,719 (+)NCBICelera
Cytogenetic Map1q12NCBI
Tmc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495560499,275 - 108,614 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495560499,214 - 106,409 (+)NCBIChiLan1.0ChiLan1.0
TMC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,165,756 - 60,179,433 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,087,703 - 62,100,931 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,093,724 - 51,107,084 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,935,416 - 59,949,255 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,935,416 - 59,949,266 (-)Ensemblpanpan1.1panPan2
TMC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,040,513 - 103,054,110 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1103,039,847 - 103,054,113 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,102,339 - 103,115,932 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,685,750 - 103,699,499 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,685,743 - 103,699,502 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,323,921 - 103,337,543 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,084,034 - 103,098,975 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,798,929 - 103,812,701 (+)NCBIUU_Cfam_GSD_1.0
Tmc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,652,896 - 2,662,350 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936994275,451 - 284,738 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,955,991 - 55,970,280 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,955,955 - 55,970,265 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,248,536 - 53,263,194 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,845,998 - 46,849,379 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,927,424 - 26,939,437 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,417,850 - 2,425,035 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,417,727 - 2,425,209 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMC4
65 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.33-13.43(chr19:50191219-58535818)x3 copy number gain See cases [RCV000050883] Chr19:50191219..58535818 [GRCh38]
Chr19:50694476..59047185 [GRCh37]
Chr19:55386288..63738997 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:49907832-58557889)x3 copy number gain See cases [RCV000052925] Chr19:49907832..58557889 [GRCh38]
Chr19:50411089..59069256 [GRCh37]
Chr19:55102901..63761068 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:51141518-58539965)x3 copy number gain See cases [RCV000052926] Chr19:51141518..58539965 [GRCh38]
Chr19:51644775..59051332 [GRCh37]
Chr19:56336587..63743144 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47908540-58539965)x3 copy number gain See cases [RCV000052914] Chr19:47908540..58539965 [GRCh38]
Chr19:48411797..59051332 [GRCh37]
Chr19:53103609..63743144 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:47929575-58572206)x3 copy number gain See cases [RCV000052915] Chr19:47929575..58572206 [GRCh38]
Chr19:48432832..59083573 [GRCh37]
Chr19:53124644..63775385 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52612432-58581203)x3 copy number gain See cases [RCV000134174] Chr19:52612432..58581203 [GRCh38]
Chr19:53115685..59092570 [GRCh37]
Chr19:57807497..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52955056-58581203)x3 copy number gain See cases [RCV000134139] Chr19:52955056..58581203 [GRCh38]
Chr19:53458309..59092570 [GRCh37]
Chr19:58150121..63784382 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh38/hg38 19q13.33-13.43(chr19:50152520-58581203)x3 copy number gain See cases [RCV000135843] Chr19:50152520..58581203 [GRCh38]
Chr19:50655777..59092570 [GRCh37]
Chr19:55347589..63784382 [NCBI36]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.41-13.43(chr19:52143873-58445521)x3 copy number gain See cases [RCV000142008] Chr19:52143873..58445521 [GRCh38]
Chr19:52647126..58956888 [GRCh37]
Chr19:57338938..63648700 [NCBI36]
Chr19:19q13.41-13.43
pathogenic
GRCh37/hg19 19q13.42(chr19:54647215-54705417)x3 copy number gain Breast ductal adenocarcinoma [RCV000207066] Chr19:54647215..54705417 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:50489390-59095359)x3 copy number gain See cases [RCV000445925] Chr19:50489390..59095359 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh37/hg19 19q13.42-13.43(chr19:54344821-58956888)x3 copy number gain See cases [RCV000448186] Chr19:54344821..58956888 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
NM_144686.4(TMC4):c.386C>G (p.Thr129Arg) single nucleotide variant not specified [RCV004322073] Chr19:54169568 [GRCh38]
Chr19:54673306 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19q13.42(chr19:53867570-55833460)x3 copy number gain not provided [RCV000684091] Chr19:53867570..55833460 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54196216-58759679)x3 copy number gain not provided [RCV000684095] Chr19:54196216..58759679 [GRCh37]
Chr19:19q13.42-13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43
pathogenic
GRCh37/hg19 19q13.33-13.43(chr19:50740074-59097160)x3 copy number gain not provided [RCV000740208] Chr19:50740074..59097160 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
GRCh38/hg38 19q13.42(chr19:54152129-54161358)x1 copy number loss Intellectual developmental disorder with speech delay, autism, and dysmorphic facies [RCV003327621] Chr19:54152129..54161358 [GRCh38]
Chr19:19q13.42
pathogenic
NM_144686.4(TMC4):c.80-6C>G single nucleotide variant not specified [RCV004298497] Chr19:54172089 [GRCh38]
Chr19:54675858 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.773T>C (p.Ile258Thr) single nucleotide variant not specified [RCV004311328] Chr19:54168195 [GRCh38]
Chr19:54671921 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42(chr19:54474844-55181741)x3 copy number gain not provided [RCV001007058] Chr19:54474844..55181741 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42(chr19:54659105-54916280)x3 copy number gain not provided [RCV001259947] Chr19:54659105..54916280 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42-13.43(chr19:54334195-56434037)x3 copy number gain not provided [RCV001259948] Chr19:54334195..56434037 [GRCh37]
Chr19:19q13.42-13.43
uncertain significance
NM_144686.4(TMC4):c.1784T>G (p.Ile595Ser) single nucleotide variant not specified [RCV004684260] Chr19:54161163 [GRCh38]
Chr19:54664900 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:48463931-57095254)x3 copy number gain not provided [RCV001259944] Chr19:48463931..57095254 [GRCh37]
Chr19:19q13.33-13.43
pathogenic
NC_000019.9:g.(?_54297303)_(55678016_?)dup duplication not provided [RCV001981426] Chr19:54297303..55678016 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1079T>A (p.Val360Asp) single nucleotide variant not specified [RCV004133162] Chr19:54164468 [GRCh38]
Chr19:54668202 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.283C>T (p.Arg95Trp) single nucleotide variant not specified [RCV004240755] Chr19:54171880 [GRCh38]
Chr19:54675649 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.722G>T (p.Arg241Leu) single nucleotide variant not specified [RCV004187640] Chr19:54168246 [GRCh38]
Chr19:54671972 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.565C>G (p.Pro189Ala) single nucleotide variant not specified [RCV004201641] Chr19:54168558 [GRCh38]
Chr19:54672284 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.309C>G (p.Ser103Arg) single nucleotide variant not specified [RCV004135357] Chr19:54169645 [GRCh38]
Chr19:54673383 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.14C>T (p.Pro5Leu) single nucleotide variant not specified [RCV004194104] Chr19:54173104 [GRCh38]
Chr19:54676799 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.505G>A (p.Val169Met) single nucleotide variant not specified [RCV004187723] Chr19:54168618 [GRCh38]
Chr19:54672344 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.2003C>T (p.Ala668Val) single nucleotide variant not specified [RCV004164707] Chr19:54160516 [GRCh38]
Chr19:54664253 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1742C>T (p.Ala581Val) single nucleotide variant not specified [RCV004179752] Chr19:54161205 [GRCh38]
Chr19:54664942 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.619C>T (p.His207Tyr) single nucleotide variant not provided [RCV003410167]|not specified [RCV004101070] Chr19:54168504 [GRCh38]
Chr19:54672230 [GRCh37]
Chr19:19q13.42
likely benign|uncertain significance
NM_144686.4(TMC4):c.1427A>T (p.Gln476Leu) single nucleotide variant not specified [RCV004168928] Chr19:54162748 [GRCh38]
Chr19:54666481 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1150C>A (p.Leu384Ile) single nucleotide variant not specified [RCV004191294] Chr19:54163851 [GRCh38]
Chr19:54667583 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1349G>A (p.Gly450Asp) single nucleotide variant not specified [RCV004133748] Chr19:54163088 [GRCh38]
Chr19:54666821 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1939C>G (p.Gln647Glu) single nucleotide variant not specified [RCV004262067] Chr19:54160912 [GRCh38]
Chr19:54664649 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1513G>A (p.Gly505Ser) single nucleotide variant not specified [RCV004260586] Chr19:54162275 [GRCh38]
Chr19:54666011 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.728G>A (p.Arg243His) single nucleotide variant not specified [RCV004248706] Chr19:54168240 [GRCh38]
Chr19:54671966 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.1910C>T (p.Thr637Ile) single nucleotide variant not specified [RCV004684258] Chr19:54160941 [GRCh38]
Chr19:54664678 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.241C>G (p.Pro81Ala) single nucleotide variant not specified [RCV004684261] Chr19:54171922 [GRCh38]
Chr19:54675691 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.271A>G (p.Met91Val) single nucleotide variant not specified [RCV004337382] Chr19:54171892 [GRCh38]
Chr19:54675661 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.172G>A (p.Glu58Lys) single nucleotide variant not specified [RCV004338788] Chr19:54171991 [GRCh38]
Chr19:54675760 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.838G>A (p.Glu280Lys) single nucleotide variant not specified [RCV004336162] Chr19:54165526 [GRCh38]
Chr19:54669260 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.42(chr19:54544215-54881884)x3 copy number gain not provided [RCV003457291] Chr19:54544215..54881884 [GRCh37]
Chr19:19q13.42
uncertain significance
GRCh37/hg19 19q13.33-13.43(chr19:49625130-57647352)x3 copy number gain not provided [RCV003485200] Chr19:49625130..57647352 [GRCh37]
Chr19:19q13.33-13.43
likely pathogenic
NM_144686.4(TMC4):c.498T>C (p.Leu166=) single nucleotide variant not provided [RCV003425407] Chr19:54168625 [GRCh38]
Chr19:54672351 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.284G>C (p.Arg95Pro) single nucleotide variant not provided [RCV003415411] Chr19:54171879 [GRCh38]
Chr19:54675648 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1942G>A (p.Ala648Thr) single nucleotide variant TMC4-related disorder [RCV003967030] Chr19:54160909 [GRCh38]
Chr19:54664646 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.533T>C (p.Met178Thr) single nucleotide variant TMC4-related disorder [RCV003904780] Chr19:54168590 [GRCh38]
Chr19:54672316 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.2112G>A (p.Pro704=) single nucleotide variant TMC4-related disorder [RCV003902230] Chr19:54160315 [GRCh38]
Chr19:54664052 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.168GGA[7] (p.Glu61_Asp62insGlu) microsatellite TMC4-related disorder [RCV003934531] Chr19:54171977..54171978 [GRCh38]
Chr19:54675746..54675747 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.203A>G (p.Lys68Arg) single nucleotide variant TMC4-related disorder [RCV003919841] Chr19:54171960 [GRCh38]
Chr19:54675729 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.911G>A (p.Arg304Gln) single nucleotide variant not specified [RCV004472626] Chr19:54165453 [GRCh38]
Chr19:54669187 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1176C>T (p.Ile392=) single nucleotide variant EBV-positive nodal T- and NK-cell lymphoma [RCV004558012] Chr19:54163825 [GRCh38]
Chr19:54667557 [GRCh37]
Chr19:19q13.42
likely benign
NM_144686.4(TMC4):c.968T>C (p.Val323Ala) single nucleotide variant not specified [RCV004472628] Chr19:54164579 [GRCh38]
Chr19:54668313 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.800C>T (p.Ser267Leu) single nucleotide variant not specified [RCV004472625] Chr19:54165564 [GRCh38]
Chr19:54669298 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.928A>G (p.Ile310Val) single nucleotide variant not specified [RCV004472627] Chr19:54165436 [GRCh38]
Chr19:54669170 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1006G>A (p.Ala336Thr) single nucleotide variant not specified [RCV004472622] Chr19:54164541 [GRCh38]
Chr19:54668275 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1051G>A (p.Ala351Thr) single nucleotide variant not specified [RCV004472623] Chr19:54164496 [GRCh38]
Chr19:54668230 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1532T>C (p.Leu511Pro) single nucleotide variant not specified [RCV004472624] Chr19:54162256 [GRCh38]
Chr19:54665992 [GRCh37]
Chr19:19q13.42
uncertain significance
NC_000019.9:g.(?_54621659)_(54797848_?)dup duplication not provided [RCV004579757] Chr19:54621659..54797848 [GRCh37]
Chr19:19q13.42
uncertain significance
NM_144686.4(TMC4):c.1087G>A (p.Ala363Thr) single nucleotide variant not specified [RCV004686861] Chr19:54164460 [GRCh38]
Chr19:54668194 [GRCh37]
Chr19:19q13.42
uncertain significance
Single allele deletion Intellectual developmental disorder with speech delay, autism, and dysmorphic facies [RCV004699150] Chr19:54123750..54183680 [GRCh38]
Chr19:19q13.42
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3313
Count of miRNA genes:929
Interacting mature miRNAs:1121
Transcripts:ENST00000301187, ENST00000376591, ENST00000416963, ENST00000446291, ENST00000449860, ENST00000465790, ENST00000468343, ENST00000476013, ENST00000479750, ENST00000494594, ENST00000495398, ENST00000497518
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597313950GWAS1410024_H1-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement QTL GWAS1410024 (human)9e-211-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement195417100954171010Human
597447833GWAS1543907_Homega-3 polyunsaturated fatty acid measurement QTL GWAS1543907 (human)5e-09omega-3 polyunsaturated fatty acid measurement195417273854172739Human
597313949GWAS1410023_H1-palmitoyl-2-linoleoyl-GPI (16:0/18:2) measurement QTL GWAS1410023 (human)2e-241-palmitoyl-2-linoleoyl-GPI (16:0/18:2) measurement195417306854173069Human
597187984GWAS1284058_H1-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement QTL GWAS1284058 (human)7e-241-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement195417100954171010Human
596954012GWAS1073531_Hserum metabolite measurement QTL GWAS1073531 (human)2e-14serum metabolite measurement195417306854173069Human
597416594GWAS1512668_Hphosphatidylinositol measurement QTL GWAS1512668 (human)7e-13blood phospholipid amount (VT:0006084)195417273854172739Human
597099677GWAS1195751_Hleukocyte count QTL GWAS1195751 (human)5e-09leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)195417311954173120Human
597140892GWAS1236966_H1-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement QTL GWAS1236966 (human)7e-411-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement195417311954173120Human
597502867GWAS1598941_H1-palmitoleoyl-GPI (16:1) measurement QTL GWAS1598941 (human)4e-281-palmitoleoyl-GPI (16:1) measurement195417273854172739Human
597253257GWAS1349331_Halkaline phosphatase measurement QTL GWAS1349331 (human)3e-63alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)195416881354168814Human
597293709GWAS1389783_Hglycerophospholipid measurement QTL GWAS1389783 (human)4e-09glycerophospholipid measurement195416726654167267Human
597187982GWAS1284056_H1-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement QTL GWAS1284056 (human)3e-301-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement195417100954171010Human
597293953GWAS1390027_Hphosphatidylinositol measurement QTL GWAS1390027 (human)2e-37phosphatidylinositol measurement195417100954171010Human
597253248GWAS1349322_Halkaline phosphatase measurement QTL GWAS1349322 (human)3e-59alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)195417074554170746Human
597295747GWAS1391821_Hphosphatidylinositol measurement QTL GWAS1391821 (human)3e-16phosphatidylinositol measurement195417306854173069Human
597295232GWAS1391306_Hphosphatidylinositol measurement QTL GWAS1391306 (human)5e-38phosphatidylinositol measurement195417100954171010Human
597124749GWAS1220823_Hphosphatidate measurement QTL GWAS1220823 (human)1e-28blood phospholipid amount (VT:0006084)195417132854171329Human
597124748GWAS1220822_Hphosphatidate measurement QTL GWAS1220822 (human)2e-31blood phospholipid amount (VT:0006084)195417068854170689Human
597136521GWAS1232595_Hbone density QTL GWAS1232595 (human)1e-37bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)195416812054168121Human
597324420GWAS1420494_Hlevel of Phosphatidylinositol (18:0_18:1) in blood serum QTL GWAS1420494 (human)8e-40level of Phosphatidylinositol (18:0_18:1) in blood serum195417306854173069Human
597126839GWAS1222913_Hphosphatidylinositol measurement QTL GWAS1222913 (human)3e-23phosphatidylinositol measurement195416101554161016Human
597126071GWAS1222145_Hdiacylglycerol 38:3 measurement QTL GWAS1222145 (human)7e-15diacylglycerol 38:3 measurement195417187454171875Human
597126838GWAS1222912_Hphosphatidylinositol measurement QTL GWAS1222912 (human)9e-19phosphatidylinositol measurement195416047254160473Human
597315771GWAS1411845_H1-linoleoyl-GPI (18:2) measurement QTL GWAS1411845 (human)1e-661-linoleoyl-GPI (18:2) measurement195417311954173120Human
597087412GWAS1183486_Hplatelet count QTL GWAS1183486 (human)3e-23platelet quantity (VT:0003179)platelet count (CMO:0000029)195417306854173069Human
597126847GWAS1222921_Hphosphatidylinositol measurement QTL GWAS1222921 (human)3e-14phosphatidylinositol measurement195416047254160473Human
597126335GWAS1222409_Hdiacylglycerol 38:3 measurement QTL GWAS1222409 (human)2e-19diacylglycerol 38:3 measurement195416101554161016Human
596953535GWAS1073054_Hphosphatidylinositol measurement QTL GWAS1073054 (human)2e-26phosphatidylinositol measurement195417306854173069Human
597126842GWAS1222916_Hphosphatidylinositol measurement QTL GWAS1222916 (human)7e-18phosphatidylinositol measurement195417187454171875Human
597432497GWAS1528571_Halcoholic liver cirrhosis QTL GWAS1528571 (human)0.0000007alcoholic liver cirrhosis195417273854172739Human
597126840GWAS1222914_Hphosphatidylinositol measurement QTL GWAS1222914 (human)2e-41phosphatidylinositol measurement195417100954171010Human
597135782GWAS1231856_H1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) measurement QTL GWAS1231856 (human)3e-461-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) measurement195417311954173120Human
597449641GWAS1545715_Hfatty acid measurement QTL GWAS1545715 (human)4e-08fatty acid measurement195417273854172739Human
597296291GWAS1392365_Hphosphatidylinositol measurement QTL GWAS1392365 (human)2e-53phosphatidylinositol measurement195417100954171010Human
597277918GWAS1373992_H1-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement QTL GWAS1373992 (human)2e-541-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement195417306854173069Human
597324253GWAS1420327_Hlevel of Phosphatidylinositol (16:0_18:1) in blood serum QTL GWAS1420327 (human)1e-11level of Phosphatidylinositol (16:0_18:1) in blood serum195417306854173069Human
597126366GWAS1222440_Hphosphatidylinositol measurement QTL GWAS1222440 (human)2e-19phosphatidylinositol measurement195417100954171010Human
597138650GWAS1234724_H1-arachidonoyl-GPI (20:4) measurement QTL GWAS1234724 (human)4e-151-arachidonoyl-GPI (20:4) measurement195417311954173120Human
597113561GWAS1209635_Hplatelet count QTL GWAS1209635 (human)1e-18platelet quantity (VT:0003179)platelet count (CMO:0000029)195417132854171329Human
597126361GWAS1222435_Hphosphatidylinositol measurement QTL GWAS1222435 (human)1e-19phosphatidylinositol measurement195417187454171875Human
597127111GWAS1223185_Hphosphatidylinositol measurement QTL GWAS1223185 (human)2e-28phosphatidylinositol measurement195416047254160473Human
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597295048GWAS1391122_Hphosphatidylinositol measurement QTL GWAS1391122 (human)5e-24phosphatidylinositol measurement195417100954171010Human
597078980GWAS1175054_Hplatelet count QTL GWAS1175054 (human)7e-22platelet quantity (VT:0003179)platelet count (CMO:0000029)195417306854173069Human
597126850GWAS1222924_Hphosphatidylinositol measurement QTL GWAS1222924 (human)5e-11phosphatidylinositol measurement195417187454171875Human
597126337GWAS1222411_Hdiacylglycerol 38:3 measurement QTL GWAS1222411 (human)2e-17diacylglycerol 38:3 measurement195416047254160473Human
597126849GWAS1222923_Hphosphatidylinositol measurement QTL GWAS1222923 (human)2e-20phosphatidylinositol measurement195417100954171010Human
597103553GWAS1199627_Hplatelet crit QTL GWAS1199627 (human)6e-23platelet critplateletcrit (CMO:0001349)195417132854171329Human
597126848GWAS1222922_Hphosphatidylinositol measurement QTL GWAS1222922 (human)6e-18phosphatidylinositol measurement195416101554161016Human
597126336GWAS1222410_Hdiacylglycerol 38:3 measurement QTL GWAS1222410 (human)2e-25diacylglycerol 38:3 measurement195417100954171010Human
597295043GWAS1391117_Hphosphatidylinositol measurement QTL GWAS1391117 (human)2e-11phosphatidylinositol measurement195417132854171329Human
597140173GWAS1236247_H1-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement QTL GWAS1236247 (human)6e-331-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement195417311954173120Human
597127114GWAS1223188_Hphosphatidylinositol measurement QTL GWAS1223188 (human)2e-24phosphatidylinositol measurement195417187454171875Human
597127113GWAS1223187_Hphosphatidylinositol measurement QTL GWAS1223187 (human)4e-59phosphatidylinositol measurement195417100954171010Human
597140169GWAS1236243_H1-palmitoyl-2-linoleoyl-GPI (16:0/18:2) measurement QTL GWAS1236243 (human)5e-401-palmitoyl-2-linoleoyl-GPI (16:0/18:2) measurement195417132854171329Human
597127112GWAS1223186_Hphosphatidylinositol measurement QTL GWAS1223186 (human)4e-37phosphatidylinositol measurement195416101554161016Human
597295046GWAS1391120_Hphosphatidylinositol measurement QTL GWAS1391120 (human)1e-34phosphatidylinositol measurement195417100954171010Human
597090814GWAS1186888_Hserum metabolite measurement QTL GWAS1186888 (human)2e-141-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) measurement195417306854173069Human
597136639GWAS1232713_H1-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement QTL GWAS1232713 (human)3e-1171-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement195417311954173120Human
597090815GWAS1186889_Hserum metabolite measurement QTL GWAS1186889 (human)2e-21serum metabolite measurement195417306854173069Human
597127399GWAS1223473_Hphosphatidylinositol measurement QTL GWAS1223473 (human)6e-32phosphatidylinositol measurement195417100954171010Human
597127398GWAS1223472_Hphosphatidylinositol measurement QTL GWAS1223472 (human)4e-21phosphatidylinositol measurement195416101554161016Human
597127397GWAS1223471_Hphosphatidylinositol measurement QTL GWAS1223471 (human)7e-16phosphatidylinositol measurement195416047254160473Human
597296104GWAS1392178_Hphosphatidylinositol measurement QTL GWAS1392178 (human)9e-60phosphatidylinositol measurement195417306854173069Human
597247724GWAS1343798_Hplatelet-to-lymphocyte ratio QTL GWAS1343798 (human)2e-11platelet-to-lymphocyte ratio195417306854173069Human
597324256GWAS1420330_Hlevel of Phosphatidylinositol (16:0_18:2) in blood serum QTL GWAS1420330 (human)4e-45level of Phosphatidylinositol (16:0_18:2) in blood serum195417306854173069Human
597297889GWAS1393963_Hphosphatidylinositol measurement QTL GWAS1393963 (human)2e-28phosphatidylinositol measurement195417132854171329Human
597306854GWAS1402928_Hplatelet count QTL GWAS1402928 (human)1e-17platelet quantity (VT:0003179)platelet count (CMO:0000029)195417306854173069Human
597127400GWAS1223474_Hphosphatidylinositol measurement QTL GWAS1223474 (human)1e-16phosphatidylinositol measurement195417187454171875Human
597505566GWAS1601640_H1-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement QTL GWAS1601640 (human)2e-461-palmitoyl-2-oleoyl-GPI (16:0/18:1) measurement195417273854172739Human
597295901GWAS1391975_Hphosphatidylinositol measurement QTL GWAS1391975 (human)4e-19phosphatidylinositol measurement195417306854173069Human
597247763GWAS1343837_Halkaline phosphatase measurement QTL GWAS1343837 (human)1e-47alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)195417187454171875Human
597490193GWAS1586267_Harachidonate 20:4n6-to-1-arachidonoylglycerophosphoinositol ratio QTL GWAS1586267 (human)2e-29arachidonate 20:4n6-to-1-arachidonoylglycerophosphoinositol ratio195417273854172739Human
597124889GWAS1220963_Hphosphatidate measurement QTL GWAS1220963 (human)2e-11blood phospholipid amount (VT:0006084)195417100954171010Human
597090816GWAS1186890_Hserum metabolite measurement QTL GWAS1186890 (human)2e-13serum metabolite measurement195417306854173069Human
597111040GWAS1207114_Hviral load QTL GWAS1207114 (human)2e-16viral load195416280454162805Human
597125940GWAS1222014_Hdiacylglycerol 38:4 measurement QTL GWAS1222014 (human)1e-20diacylglycerol 38:4 measurement195417187454171875Human
597125939GWAS1222013_Hdiacylglycerol 38:4 measurement QTL GWAS1222013 (human)3e-46diacylglycerol 38:4 measurement195417100954171010Human
597125938GWAS1222012_Hdiacylglycerol 38:4 measurement QTL GWAS1222012 (human)7e-32diacylglycerol 38:4 measurement195416101554161016Human
597125937GWAS1222011_Hdiacylglycerol 38:4 measurement QTL GWAS1222011 (human)8e-25diacylglycerol 38:4 measurement195416047254160473Human
597295665GWAS1391739_Hphosphatidylinositol measurement QTL GWAS1391739 (human)9e-30phosphatidylinositol measurement195417100954171010Human
597170743GWAS1266817_Hfatty acid measurement QTL GWAS1266817 (human)9e-13fatty acid measurement195417132854171329Human
597124390GWAS1220464_Hphosphatidylinositol measurement QTL GWAS1220464 (human)4e-12phosphatidylinositol measurement195416101554161016Human
597295657GWAS1391731_Hphosphatidylinositol measurement QTL GWAS1391731 (human)3e-41phosphatidylinositol measurement195417100954171010Human
597295662GWAS1391736_Hphosphatidylinositol measurement QTL GWAS1391736 (human)1e-09phosphatidylinositol measurement195417100954171010Human
597328930GWAS1425004_H1-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement QTL GWAS1425004 (human)9e-161-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement195417306854173069Human
597328163GWAS1424237_H1-linoleoyl-GPI (18:2) measurement QTL GWAS1424237 (human)1e-331-linoleoyl-GPI (18:2) measurement195417306854173069Human
597314848GWAS1410922_H1-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement QTL GWAS1410922 (human)5e-341-stearoyl-2-linoleoyl-GPI (18:0/18:2) measurement195417100954171010Human
597444902GWAS1540976_Hfatty acid measurement QTL GWAS1540976 (human)2e-08fatty acid measurement195417273854172739Human
597136685GWAS1232759_H1-palmitoyl-GPI (16:0) measurement QTL GWAS1232759 (human)2e-171-palmitoyl-GPI (16:0) measurement195417311954173120Human
597314849GWAS1410923_H1-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement QTL GWAS1410923 (human)9e-131-stearoyl-2-oleoyl-GPI (18:0/18:1) measurement195417100954171010Human
597295654GWAS1391728_Hphosphatidylinositol measurement QTL GWAS1391728 (human)4e-11phosphatidylinositol measurement195417100954171010Human
597314342GWAS1410416_H1-linoleoyl-GPI (18:2) measurement QTL GWAS1410416 (human)2e-221-linoleoyl-GPI (18:2) measurement195417100954171010Human
597296474GWAS1392548_Hphosphatidylinositol measurement QTL GWAS1392548 (human)6e-22phosphatidylinositol measurement195417100954171010Human
597260637GWAS1356711_Hphosphatidylinositol measurement QTL GWAS1356711 (human)1e-31phosphatidylinositol measurement195417068854170689Human
597295966GWAS1392040_Hphosphatidylinositol measurement QTL GWAS1392040 (human)2e-40phosphatidylinositol measurement195417306854173069Human
597138258GWAS1234332_H1-linoleoyl-GPI (18:2) measurement QTL GWAS1234332 (human)2e-26phosphatidylinositol measurement195417306854173069Human
597140319GWAS1236393_H1-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement QTL GWAS1236393 (human)6e-371-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement195417306854173069Human
597126237GWAS1222311_Hphosphatidylinositol measurement QTL GWAS1222311 (human)7e-50phosphatidylinositol measurement195417100954171010Human
597126236GWAS1222310_Hphosphatidylinositol measurement QTL GWAS1222310 (human)6e-31phosphatidylinositol measurement195416101554161016Human
597126235GWAS1222309_Hphosphatidylinositol measurement QTL GWAS1222309 (human)4e-23phosphatidylinositol measurement195416047254160473Human
597186900GWAS1282974_H1-linoleoyl-GPI (18:2) measurement QTL GWAS1282974 (human)2e-221-linoleoyl-GPI (18:2) measurement195417132854171329Human
597379147GWAS1475221_Herythrocyte count QTL GWAS1475221 (human)5e-08erythrocyte countred blood cell count (CMO:0000025)195417273854172739Human
597125199GWAS1221273_Hphosphatidate measurement QTL GWAS1221273 (human)4e-10blood phospholipid amount (VT:0006084)195417187454171875Human
597125198GWAS1221272_Hphosphatidate measurement QTL GWAS1221272 (human)3e-10blood phospholipid amount (VT:0006084)195417061154170612Human
597125196GWAS1221270_Hphosphatidate measurement QTL GWAS1221270 (human)1e-10blood phospholipid amount (VT:0006084)195417306854173069Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
597293895GWAS1389969_Hphosphatidylinositol measurement QTL GWAS1389969 (human)3e-27phosphatidylinositol measurement195417306854173069Human
597295227GWAS1391301_Hphosphatidylinositol measurement QTL GWAS1391301 (human)3e-08phosphatidylinositol measurement195417100954171010Human
597297784GWAS1393858_Hphosphatidylinositol measurement QTL GWAS1393858 (human)2e-09phosphatidylinositol measurement195417306854173069Human
597295742GWAS1391816_Hphosphatidylinositol measurement QTL GWAS1391816 (human)1e-47phosphatidylinositol measurement195417100954171010Human
597293693GWAS1389767_Hphosphatidylinositol measurement QTL GWAS1389767 (human)3e-30phosphatidylinositol measurement195417132854171329Human
597293692GWAS1389766_Hphosphatidylinositol measurement QTL GWAS1389766 (human)2e-08phosphatidylinositol measurement195416726654167267Human
597295743GWAS1391817_Hphosphatidylinositol measurement QTL GWAS1391817 (human)2e-18phosphatidylinositol measurement195417100954171010Human
597293951GWAS1390025_Hphosphatidylinositol measurement QTL GWAS1390025 (human)6e-29phosphatidylinositol measurement195417100954171010Human
597295741GWAS1391815_Hphosphatidylinositol measurement QTL GWAS1391815 (human)2e-31phosphatidylinositol measurement195417100954171010Human
597171824GWAS1267898_Hleukocyte immunoglobulin-like receptor subfamily B member 3 measurement QTL GWAS1267898 (human)1e-12leukocyte immunoglobulin-like receptor subfamily B member 3 measurement195416683754166838Human
597135739GWAS1231813_H1-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement QTL GWAS1231813 (human)2e-1111-stearoyl-2-arachidonoyl-GPI (18:0/20:4) measurement195417311954173120Human
597136250GWAS1232324_H1-oleoyl-GPI (18:1) measurement QTL GWAS1232324 (human)9e-251-oleoyl-GPI (18:1) measurement195417100954171010Human
597341044GWAS1437118_Hserum alanine aminotransferase measurement QTL GWAS1437118 (human)2e-10serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)195417100954171010Human
597126758GWAS1222832_Hphosphatidylinositol measurement QTL GWAS1222832 (human)9e-21phosphatidylinositol measurement195417187454171875Human
597126757GWAS1222831_Hphosphatidylinositol measurement QTL GWAS1222831 (human)6e-46phosphatidylinositol measurement195417100954171010Human
597126756GWAS1222830_Hphosphatidylinositol measurement QTL GWAS1222830 (human)4e-38phosphatidylinositol measurement195416101554161016Human
597126755GWAS1222829_Hphosphatidylinositol measurement QTL GWAS1222829 (human)7e-30phosphatidylinositol measurement195416047254160473Human
597298031GWAS1394105_Hphosphatidylinositol measurement QTL GWAS1394105 (human)4e-19phosphatidylinositol measurement195417100954171010Human
597104737GWAS1200811_Hneutrophil count QTL GWAS1200811 (human)1e-09neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)195417311954173120Human
597487206GWAS1583280_Hphosphatidylinositol measurement QTL GWAS1583280 (human)1e-13phosphatidylinositol measurement195417273854172739Human
597161323GWAS1257397_Hdocosahexaenoic acid measurement QTL GWAS1257397 (human)2e-08fatty acid amount (VT:0010046)blood free fatty acids level (CMO:0000117)195417306854173069Human
597096552GWAS1192626_Halkaline phosphatase measurement QTL GWAS1192626 (human)3e-10alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)195417187454171875Human

Markers in Region
RH93451  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,246 - 54,677,429UniSTSGRCh37
Build 361959,369,058 - 59,369,241RGDNCBI36
Celera1951,718,537 - 51,718,720RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,370 - 50,993,553UniSTS
GeneMap99-GB4 RH Map19280.26UniSTS
RH102357  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,052 - 54,664,264UniSTSGRCh37
Build 361959,355,864 - 59,356,076RGDNCBI36
Celera1951,705,339 - 51,705,551RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,351 - 50,980,563UniSTS
GeneMap99-GB4 RH Map19299.37UniSTS
D19S668E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,248 - 54,677,354UniSTSGRCh37
Build 361959,369,060 - 59,369,166RGDNCBI36
Celera1951,718,539 - 51,718,645RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,372 - 50,993,478UniSTS
ECD00949  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,390 - 54,677,273UniSTSGRCh37
Build 361959,368,202 - 59,369,085RGDNCBI36
Celera1951,717,681 - 51,718,564RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,992,514 - 50,993,397UniSTS
ECD01066  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,950 - 54,669,829UniSTSGRCh37
GRCh371954,668,950 - 54,670,116UniSTSGRCh37
Build 361959,360,762 - 59,361,641RGDNCBI36
Celera1951,710,237 - 51,711,408UniSTS
Celera1951,710,237 - 51,711,116RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,985,247 - 50,986,126UniSTS
HuRef1950,985,247 - 50,986,420UniSTS
ECD03415  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,316 - 54,678,112UniSTSGRCh37
Build 361959,369,128 - 59,369,924RGDNCBI36
Celera1951,718,607 - 51,719,403RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,440 - 50,994,232UniSTS
ECD05349  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,028 - 54,668,766UniSTSGRCh37
Build 361959,359,840 - 59,360,578RGDNCBI36
Celera1951,709,315 - 51,710,053RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,984,324 - 50,985,062UniSTS
ECD09501  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,671,809 - 54,672,436UniSTSGRCh37
Build 361959,363,621 - 59,364,248RGDNCBI36
Cytogenetic Map19q13.42UniSTS
HuRef1950,988,113 - 50,988,740UniSTS
ECD11406  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,267 - 54,675,840UniSTSGRCh37
Build 361959,367,079 - 59,367,652RGDNCBI36
Celera1951,716,558 - 51,717,131RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,539 - 50,992,112UniSTS
ECD11434  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,857 - 54,666,429UniSTSGRCh37
Build 361959,357,669 - 59,358,241RGDNCBI36
Celera1951,707,145 - 51,707,717RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,157 - 50,982,728UniSTS
ECD12317  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,443 - 54,666,990UniSTSGRCh37
Build 361959,358,255 - 59,358,802RGDNCBI36
Celera1951,707,731 - 51,708,278RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,742 - 50,983,289UniSTS
ECD15349  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,580 - 54,665,052UniSTSGRCh37
Build 361959,356,392 - 59,356,864RGDNCBI36
Celera1951,705,867 - 51,706,339RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,879 - 50,981,351UniSTS
ECD19161  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,667,349 - 54,667,681UniSTSGRCh37
Build 361959,359,161 - 59,359,493RGDNCBI36
Celera1951,708,637 - 51,708,969RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,646 - 50,983,978UniSTS
ECD20410  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,042 - 54,664,327UniSTSGRCh37
Build 361959,355,854 - 59,356,139RGDNCBI36
Celera1951,705,329 - 51,705,614RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,341 - 50,980,626UniSTS
ECD23763  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,673,250 - 54,673,427UniSTSGRCh37
Build 361959,365,062 - 59,365,239RGDNCBI36
Celera1951,714,542 - 51,714,719RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,989,522 - 50,989,699UniSTS
D2S2687  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,672,105 - 54,672,205UniSTSGRCh37
Build 361959,363,917 - 59,364,017RGDNCBI36
Celera1951,713,397 - 51,713,497RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,988,409 - 50,988,509UniSTS
Whitehead-YAC Contig Map19 UniSTS
A003B05  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,125 - 54,677,313UniSTSGRCh37
Build 361959,368,937 - 59,369,125RGDNCBI36
Celera1951,718,416 - 51,718,604RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,249 - 50,993,437UniSTS
GeneMap99-GB4 RH Map19301.29UniSTS
NCBI RH Map19580.7UniSTS
REN91769  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,663,424 - 54,663,670UniSTSGRCh37
Build 361959,355,236 - 59,355,482RGDNCBI36
Celera1951,704,710 - 51,704,956RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,979,722 - 50,979,968UniSTS
REN91770  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,663,650 - 54,663,894UniSTSGRCh37
Build 361959,355,462 - 59,355,706RGDNCBI36
Celera1951,704,936 - 51,705,180RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,979,948 - 50,980,192UniSTS
REN91771  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,663,870 - 54,664,111UniSTSGRCh37
Build 361959,355,682 - 59,355,923RGDNCBI36
Celera1951,705,156 - 51,705,398RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,168 - 50,980,410UniSTS
REN91772  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,083 - 54,664,331UniSTSGRCh37
Build 361959,355,895 - 59,356,143RGDNCBI36
Celera1951,705,370 - 51,705,618RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,382 - 50,980,630UniSTS
REN91773  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,327 - 54,664,588UniSTSGRCh37
Build 361959,356,139 - 59,356,400RGDNCBI36
Celera1951,705,614 - 51,705,875RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,626 - 50,980,887UniSTS
REN91774  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,579 - 54,664,829UniSTSGRCh37
Build 361959,356,391 - 59,356,641RGDNCBI36
Celera1951,705,866 - 51,706,116RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,980,878 - 50,981,128UniSTS
REN91775  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,813 - 54,665,051UniSTSGRCh37
Build 361959,356,625 - 59,356,863RGDNCBI36
Celera1951,706,100 - 51,706,338RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,981,112 - 50,981,350UniSTS
REN91776  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,019 - 54,665,269UniSTSGRCh37
Build 361959,356,831 - 59,357,081RGDNCBI36
Celera1951,706,306 - 51,706,557RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,981,318 - 50,981,569UniSTS
REN91777  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,344 - 54,665,614UniSTSGRCh37
Build 361959,357,156 - 59,357,426RGDNCBI36
Celera1951,706,632 - 51,706,902RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,981,644 - 50,981,914UniSTS
REN91778  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,607 - 54,665,867UniSTSGRCh37
Build 361959,357,419 - 59,357,679RGDNCBI36
Celera1951,706,895 - 51,707,155RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,981,907 - 50,982,167UniSTS
REN91779  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,860 - 54,666,124UniSTSGRCh37
Build 361959,357,672 - 59,357,936RGDNCBI36
Celera1951,707,148 - 51,707,412RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,160 - 50,982,424UniSTS
REN91780  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,102 - 54,666,351UniSTSGRCh37
Build 361959,357,914 - 59,358,163RGDNCBI36
Celera1951,707,390 - 51,707,639RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,402 - 50,982,650UniSTS
REN91781  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,325 - 54,666,587UniSTSGRCh37
Build 361959,358,137 - 59,358,399RGDNCBI36
Celera1951,707,613 - 51,707,875RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,624 - 50,982,886UniSTS
REN91782  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,569 - 54,666,801UniSTSGRCh37
Build 361959,358,381 - 59,358,613RGDNCBI36
Celera1951,707,857 - 51,708,089RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,982,868 - 50,983,100UniSTS
REN91783  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,779 - 54,667,028UniSTSGRCh37
Build 361959,358,591 - 59,358,840RGDNCBI36
Celera1951,708,067 - 51,708,316RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,078 - 50,983,327UniSTS
REN91784  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,666,976 - 54,667,210UniSTSGRCh37
Build 361959,358,788 - 59,359,022RGDNCBI36
Celera1951,708,264 - 51,708,498RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,275 - 50,983,507UniSTS
REN91785  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,667,190 - 54,667,438UniSTSGRCh37
Build 361959,359,002 - 59,359,250RGDNCBI36
Celera1951,708,478 - 51,708,726RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,487 - 50,983,735UniSTS
REN91786  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,667,419 - 54,667,651UniSTSGRCh37
Build 361959,359,231 - 59,359,463RGDNCBI36
Celera1951,708,707 - 51,708,939RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,716 - 50,983,948UniSTS
REN91787  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,667,550 - 54,667,774UniSTSGRCh37
Build 361959,359,362 - 59,359,586RGDNCBI36
Celera1951,708,838 - 51,709,061RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,983,847 - 50,984,070UniSTS
REN91788  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,012 - 54,668,249UniSTSGRCh37
Build 361959,359,824 - 59,360,061RGDNCBI36
Celera1951,709,299 - 51,709,536RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,984,308 - 50,984,545UniSTS
REN91789  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,235 - 54,668,481UniSTSGRCh37
Build 361959,360,047 - 59,360,293RGDNCBI36
Celera1951,709,522 - 51,709,768RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,984,531 - 50,984,777UniSTS
REN91790  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,461 - 54,668,717UniSTSGRCh37
Build 361959,360,273 - 59,360,529RGDNCBI36
Celera1951,709,748 - 51,710,004RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,984,757 - 50,985,013UniSTS
REN91791  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,689 - 54,668,935UniSTSGRCh37
Build 361959,360,501 - 59,360,747RGDNCBI36
Celera1951,709,976 - 51,710,222RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,984,985 - 50,985,232UniSTS
REN91792  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,915 - 54,669,164UniSTSGRCh37
Build 361959,360,727 - 59,360,976RGDNCBI36
Celera1951,710,202 - 51,710,451RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,985,212 - 50,985,461UniSTS
REN91793  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,669,141 - 54,669,384UniSTSGRCh37
Build 361959,360,953 - 59,361,196RGDNCBI36
Celera1951,710,428 - 51,710,671RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,985,438 - 50,985,681UniSTS
REN91794  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,669,381 - 54,669,632UniSTSGRCh37
Build 361959,361,193 - 59,361,444RGDNCBI36
Celera1951,710,668 - 51,710,919RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,985,678 - 50,985,929UniSTS
REN91795  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,669,579 - 54,669,823UniSTSGRCh37
Build 361959,361,391 - 59,361,635RGDNCBI36
Celera1951,710,866 - 51,711,110RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,985,876 - 50,986,120UniSTS
REN91796  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,670,081 - 54,670,307UniSTSGRCh37
Build 361959,361,893 - 59,362,119RGDNCBI36
Celera1951,711,373 - 51,711,599RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,986,384 - 50,986,610UniSTS
REN91797  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,670,155 - 54,670,401UniSTSGRCh37
Build 361959,361,967 - 59,362,213RGDNCBI36
Celera1951,711,447 - 51,711,693RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,986,458 - 50,986,704UniSTS
REN91798  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,670,696 - 54,670,920UniSTSGRCh37
Build 361959,362,508 - 59,362,732RGDNCBI36
Celera1951,711,988 - 51,712,212RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,987,000 - 50,987,224UniSTS
REN91799  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,671,823 - 54,672,096UniSTSGRCh37
Build 361959,363,635 - 59,363,908RGDNCBI36
Celera1951,713,114 - 51,713,388RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,988,127 - 50,988,400UniSTS
REN91800  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,671,989 - 54,672,252UniSTSGRCh37
Build 361959,363,801 - 59,364,064RGDNCBI36
Celera1951,713,281 - 51,713,544RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,988,293 - 50,988,556UniSTS
REN91801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,672,176 - 54,672,442UniSTSGRCh37
Build 361959,363,988 - 59,364,254RGDNCBI36
Celera1951,713,468 - 51,713,734RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,988,480 - 50,988,746UniSTS
REN91802  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,673,078 - 54,673,316UniSTSGRCh37
Build 361959,364,890 - 59,365,128RGDNCBI36
Celera1951,714,370 - 51,714,608RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,989,350 - 50,989,588UniSTS
REN91803  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,673,294 - 54,673,526UniSTSGRCh37
Build 361959,365,106 - 59,365,338RGDNCBI36
Celera1951,714,586 - 51,714,818RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,989,566 - 50,989,798UniSTS
REN91804  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,673,878 - 54,674,112UniSTSGRCh37
Build 361959,365,690 - 59,365,924RGDNCBI36
Celera1951,715,170 - 51,715,403RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,990,151 - 50,990,384UniSTS
REN91805  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,674,089 - 54,674,344UniSTSGRCh37
Build 361959,365,901 - 59,366,156RGDNCBI36
Celera1951,715,380 - 51,715,635RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,990,361 - 50,990,616UniSTS
REN91806  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,674,329 - 54,674,590UniSTSGRCh37
Build 361959,366,141 - 59,366,402RGDNCBI36
Celera1951,715,620 - 51,715,881RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,990,601 - 50,990,862UniSTS
REN91807  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,674,526 - 54,674,750UniSTSGRCh37
Build 361959,366,338 - 59,366,562RGDNCBI36
Celera1951,715,817 - 51,716,041RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,990,798 - 50,991,022UniSTS
REN91808  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,674,742 - 54,674,984UniSTSGRCh37
Build 361959,366,554 - 59,366,796RGDNCBI36
Celera1951,716,033 - 51,716,275RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,014 - 50,991,256UniSTS
REN91809  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,200 - 54,675,427UniSTSGRCh37
Build 361959,367,012 - 59,367,239RGDNCBI36
Celera1951,716,491 - 51,716,718RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,472 - 50,991,699UniSTS
REN91810  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,344 - 54,675,593UniSTSGRCh37
Build 361959,367,156 - 59,367,405RGDNCBI36
Celera1951,716,635 - 51,716,884RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,616 - 50,991,865UniSTS
REN91811  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,573 - 54,675,842UniSTSGRCh37
Build 361959,367,385 - 59,367,654RGDNCBI36
Celera1951,716,864 - 51,717,133RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,845 - 50,992,114UniSTS
REN91812  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,701 - 54,675,930UniSTSGRCh37
GRCh371954,675,701 - 54,676,299UniSTSGRCh37
Build 361959,367,513 - 59,367,742RGDNCBI36
Celera1951,716,992 - 51,717,590UniSTS
Celera1951,716,992 - 51,717,221RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,991,973 - 50,992,202UniSTS
HuRef1950,991,973 - 50,992,423UniSTS
REN91813  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,231 - 54,676,456UniSTSGRCh37
Build 361959,368,043 - 59,368,268RGDNCBI36
Celera1951,717,522 - 51,717,747RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,992,355 - 50,992,580UniSTS
REN91814  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,440 - 54,676,699UniSTSGRCh37
Build 361959,368,252 - 59,368,511RGDNCBI36
Celera1951,717,731 - 51,717,990RGD
Cytogenetic Map19q13.42UniSTS
HuRef1950,992,564 - 50,992,823UniSTS
REN91815  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,676 - 54,676,904UniSTSGRCh37
Build 361959,368,488 - 59,368,716RGDNCBI36
Celera1951,717,967 - 51,718,195RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,992,800 - 50,993,028UniSTS
REN91816  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,874 - 54,677,127UniSTSGRCh37
Build 361959,368,686 - 59,368,939RGDNCBI36
Celera1951,718,165 - 51,718,418RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,992,998 - 50,993,251UniSTS
REN91817  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,105 - 54,677,349UniSTSGRCh37
Build 361959,368,917 - 59,369,161RGDNCBI36
Celera1951,718,396 - 51,718,640RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,229 - 50,993,473UniSTS
REN91818  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,345 - 54,677,616UniSTSGRCh37
Build 361959,369,157 - 59,369,428RGDNCBI36
Celera1951,718,636 - 51,718,907RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,469 - 50,993,736UniSTS
REN91819  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,592 - 54,677,830UniSTSGRCh37
Build 361959,369,404 - 59,369,642RGDNCBI36
Celera1951,718,883 - 51,719,121RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,712 - 50,993,950UniSTS
REN91820  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,749 - 54,677,973UniSTSGRCh37
Build 361959,369,561 - 59,369,785RGDNCBI36
Celera1951,719,040 - 51,719,264RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,993,869 - 50,994,093UniSTS
REN91821  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,964 - 54,678,232UniSTSGRCh37
Build 361959,369,776 - 59,370,044RGDNCBI36
Celera1951,719,255 - 51,719,523RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,994,084 - 50,994,352UniSTS
REN91822  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,678,138 - 54,678,395UniSTSGRCh37
Build 361959,369,950 - 59,370,207RGDNCBI36
Celera1951,719,429 - 51,719,686RGD
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.4UniSTS
HuRef1950,994,258 - 50,994,515UniSTS
stSG605836  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,664,246 - 54,665,633UniSTSGRCh37
Build 361959,356,058 - 59,357,445RGDNCBI36
Celera1951,705,533 - 51,706,921RGD
HuRef1950,980,545 - 50,981,933UniSTS
stSG605837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,665,617 - 54,666,813UniSTSGRCh37
Build 361959,357,429 - 59,358,625RGDNCBI36
Celera1951,706,905 - 51,708,101RGD
HuRef1950,981,917 - 50,983,112UniSTS
stSG605839  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,668,192 - 54,669,372UniSTSGRCh37
Build 361959,360,004 - 59,361,184RGDNCBI36
Celera1951,709,479 - 51,710,659RGD
HuRef1950,984,488 - 50,985,669UniSTS
stSG605840  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,669,160 - 54,670,172UniSTSGRCh37
Build 361959,360,972 - 59,361,984RGDNCBI36
Celera1951,710,447 - 51,711,464RGD
HuRef1950,985,457 - 50,986,475UniSTS
stSG605841  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,670,154 - 54,671,496UniSTSGRCh37
Build 361959,361,966 - 59,363,308RGDNCBI36
Celera1951,711,446 - 51,712,788RGD
HuRef1950,986,457 - 50,987,800UniSTS
stSG605842  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,671,477 - 54,672,677UniSTSGRCh37
Build 361959,363,289 - 59,364,489RGDNCBI36
Celera1951,712,769 - 51,713,969RGD
HuRef1950,987,781 - 50,988,981UniSTS
HuRef1950,987,781 - 50,988,989UniSTS
HuRef1950,987,781 - 50,988,969UniSTS
stSG605844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,674,114 - 54,675,396UniSTSGRCh37
Build 361959,365,926 - 59,367,208RGDNCBI36
Celera1951,715,405 - 51,716,687RGD
HuRef1950,990,386 - 50,991,668UniSTS
stSG605845  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,675,377 - 54,676,447UniSTSGRCh37
Build 361959,367,189 - 59,368,259RGDNCBI36
Celera1951,716,668 - 51,717,738RGD
HuRef1950,991,649 - 50,992,571UniSTS
stSG605846  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,676,428 - 54,677,660UniSTSGRCh37
Build 361959,368,240 - 59,369,472RGDNCBI36
Celera1951,717,719 - 51,718,951RGD
HuRef1950,992,552 - 50,993,780UniSTS
stSG605847  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371954,677,659 - 54,678,669UniSTSGRCh37
Build 361959,369,471 - 59,370,481RGDNCBI36
Celera1951,718,950 - 51,719,960RGD
HuRef1950,993,779 - 50,994,789UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2247 4950 1726 2351 6 624 1924 465 2269 7272 6440 51 3714 1 852 1744 1616 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011526486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054319880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054329665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054330941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054331491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054333628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_935741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA578987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC245052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY236492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY263166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ082417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU680152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU151838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU457734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ656026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM005517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF511280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000446291   ⟹   ENSP00000416444
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,168,171 - 54,172,752 (-)Ensembl
Ensembl Acc Id: ENST00000476013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,164,539 - 54,171,949 (-)Ensembl
Ensembl Acc Id: ENST00000495398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,162,226 - 54,163,267 (-)Ensembl
Ensembl Acc Id: ENST00000497518
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,164,552 - 54,168,482 (-)Ensembl
Ensembl Acc Id: ENST00000611183
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,160,108 - 54,160,649 (-)Ensembl
Ensembl Acc Id: ENST00000613492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,163,108 - 54,173,160 (-)Ensembl
Ensembl Acc Id: ENST00000613723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,160,108 - 54,164,716 (-)Ensembl
Ensembl Acc Id: ENST00000615945   ⟹   ENSP00000481392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,160,108 - 54,160,972 (-)Ensembl
Ensembl Acc Id: ENST00000617472   ⟹   ENSP00000477627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,160,165 - 54,173,250 (-)Ensembl
Ensembl Acc Id: ENST00000619895   ⟹   ENSP00000479458
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1954,160,108 - 54,173,160 (-)Ensembl
RefSeq Acc Id: NM_001145303   ⟹   NP_001138775
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,160,108 - 54,173,160 (-)NCBI
GRCh371954,663,833 - 54,676,944 (-)RGD
Celera1951,705,119 - 51,718,235 (-)RGD
HuRef1950,980,131 - 50,993,068 (-)ENTREZGENE
CHM1_11954,665,114 - 54,678,269 (-)NCBI
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBI
Sequence:
RefSeq Acc Id: NM_144686   ⟹   NP_653287
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,160,108 - 54,173,160 (-)NCBI
GRCh371954,663,833 - 54,676,944 (-)RGD
Build 361959,355,658 - 59,368,664 (-)NCBI Archive
Celera1951,705,119 - 51,718,235 (-)RGD
HuRef1950,980,131 - 50,993,068 (-)ENTREZGENE
CHM1_11954,665,114 - 54,678,269 (-)NCBI
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011526486   ⟹   XP_011524788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,160,108 - 54,173,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054319879   ⟹   XP_054175854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBI
RefSeq Acc Id: XM_054319880   ⟹   XP_054175855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBI
RefSeq Acc Id: XR_008485087
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01957,240,374 - 57,253,360 (-)NCBI
RefSeq Acc Id: XR_935741
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,160,108 - 54,173,160 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001138775 (Get FASTA)   NCBI Sequence Viewer  
  NP_653287 (Get FASTA)   NCBI Sequence Viewer  
  XP_011524788 (Get FASTA)   NCBI Sequence Viewer  
  XP_054175854 (Get FASTA)   NCBI Sequence Viewer  
  XP_054175855 (Get FASTA)   NCBI Sequence Viewer  
  XP_054185640 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186118 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186119 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186431 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186432 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186684 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186685 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186915 (Get FASTA)   NCBI Sequence Viewer  
  XP_054186916 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187193 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187194 (Get FASTA)   NCBI Sequence Viewer  
  XP_054187466 (Get FASTA)   NCBI Sequence Viewer  
  XP_054189504 (Get FASTA)   NCBI Sequence Viewer  
  XP_054189505 (Get FASTA)   NCBI Sequence Viewer  
  XP_054189602 (Get FASTA)   NCBI Sequence Viewer  
  XP_054189603 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25323 (Get FASTA)   NCBI Sequence Viewer  
  AAH32477 (Get FASTA)   NCBI Sequence Viewer  
  AAP69870 (Get FASTA)   NCBI Sequence Viewer  
  AAP78781 (Get FASTA)   NCBI Sequence Viewer  
  AEE61114 (Get FASTA)   NCBI Sequence Viewer  
  BAG37472 (Get FASTA)   NCBI Sequence Viewer  
  EAW72196 (Get FASTA)   NCBI Sequence Viewer  
  EAW72197 (Get FASTA)   NCBI Sequence Viewer  
  EAW72198 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000416444.1
  ENSP00000477627
  ENSP00000477627.1
  ENSP00000477927.1
  ENSP00000477941.1
  ENSP00000478046.1
  ENSP00000479458
  ENSP00000479458.1
  ENSP00000479590.1
  ENSP00000479689.1
  ENSP00000481093.1
  ENSP00000481281.1
  ENSP00000481392.1
  ENSP00000481629.1
  ENSP00000482261.1
  ENSP00000482528.1
  ENSP00000483221.1
  ENSP00000483594.1
  ENSP00000483893.1
  ENSP00000484205.1
GenBank Protein Q7Z404 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001138775   ⟸   NM_001145303
- Peptide Label: isoform 1
- UniProtKB: A0A087WT65 (UniProtKB/TrEMBL),   A0A0G2JPL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_653287   ⟸   NM_144686
- Peptide Label: isoform 2
- UniProtKB: A0A087WVI4 (UniProtKB/TrEMBL),   A0A0G2JMM6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011524788   ⟸   XM_011526486
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSP00000481392   ⟸   ENST00000615945
Ensembl Acc Id: ENSP00000477627   ⟸   ENST00000617472
Ensembl Acc Id: ENSP00000416444   ⟸   ENST00000446291
Ensembl Acc Id: ENSP00000479458   ⟸   ENST00000619895
RefSeq Acc Id: XP_054175855   ⟸   XM_054319880
- Peptide Label: isoform X9
RefSeq Acc Id: XP_054175854   ⟸   XM_054319879
- Peptide Label: isoform X1
Protein Domains
TMC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7Z404-F1-model_v2 AlphaFold Q7Z404 1-712 view protein structure

Promoters
RGD ID:13205575
Promoter ID:EPDNEW_H26368
Type:initiation region
Name:TMC4_2
Description:transmembrane channel like 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26369  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,164,777 - 54,164,837EPDNEW
RGD ID:13205577
Promoter ID:EPDNEW_H26369
Type:initiation region
Name:TMC4_1
Description:transmembrane channel like 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26368  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381954,173,160 - 54,173,220EPDNEW
RGD ID:6796110
Promoter ID:HG_KWN:30921
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour
Transcripts:OTTHUMT00000142158
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,359,941 - 59,360,441 (-)MPROMDB
RGD ID:6796111
Promoter ID:HG_KWN:30922
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour
Transcripts:OTTHUMT00000142156
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,363,874 - 59,364,374 (-)MPROMDB
RGD ID:6796109
Promoter ID:HG_KWN:30924
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_001145303,   NM_144686,   OTTHUMT00000142150,   OTTHUMT00000142151,   OTTHUMT00000142152
Position:
Human AssemblyChrPosition (strand)Source
Build 361959,368,236 - 59,369,637 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:22998 AgrOrtholog
COSMIC TMC4 COSMIC
Ensembl Genes ENSG00000167608 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSG00000273722 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000274384 UniProtKB/TrEMBL
  ENSG00000274873 UniProtKB/Swiss-Prot
  ENSG00000274905 UniProtKB/Swiss-Prot
  ENSG00000276260 UniProtKB/Swiss-Prot
  ENSG00000277667 UniProtKB/Swiss-Prot
  ENSG00000277789 UniProtKB/TrEMBL
  ENSG00000277996 UniProtKB/Swiss-Prot
  ENSG00000278363 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000446291.1 UniProtKB/TrEMBL
  ENST00000610383.1 UniProtKB/TrEMBL
  ENST00000612564.4 UniProtKB/TrEMBL
  ENST00000612712.1 UniProtKB/Swiss-Prot
  ENST00000613354.1 UniProtKB/Swiss-Prot
  ENST00000615945.4 UniProtKB/TrEMBL
  ENST00000616323.1 UniProtKB/Swiss-Prot
  ENST00000616977.4 UniProtKB/TrEMBL
  ENST00000617472 ENTREZGENE
  ENST00000617472.4 UniProtKB/TrEMBL
  ENST00000618950.4 UniProtKB/Swiss-Prot
  ENST00000619470.1 UniProtKB/Swiss-Prot
  ENST00000619510.4 UniProtKB/TrEMBL
  ENST00000619895 ENTREZGENE
  ENST00000619895.5 UniProtKB/TrEMBL
  ENST00000620520.1 UniProtKB/Swiss-Prot
  ENST00000621539.1 UniProtKB/TrEMBL
  ENST00000621671.4 UniProtKB/Swiss-Prot
  ENST00000621826.1 UniProtKB/TrEMBL
  ENST00000622368.1 UniProtKB/Swiss-Prot
GTEx ENSG00000167608 GTEx
  ENSG00000273722 GTEx
  ENSG00000274384 GTEx
  ENSG00000274873 GTEx
  ENSG00000274905 GTEx
  ENSG00000276260 GTEx
  ENSG00000277667 GTEx
  ENSG00000277789 GTEx
  ENSG00000277996 GTEx
  ENSG00000278363 GTEx
HGNC ID HGNC:22998 ENTREZGENE
Human Proteome Map TMC4 Human Proteome Map
InterPro TMC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TMC_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:147798 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 147798 ENTREZGENE
OMIM 617181 OMIM
PANTHER PTHR23302 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE CHANNEL-LIKE PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TMC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134874063 PharmGKB
RNAcentral URS0002617DBA RNACentral
  URS0002617DF8 RNACentral
  URS0002617F44 RNACentral
  URS0002618496 RNACentral
UniProt A0A087WT65 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WVI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WXY6_HUMAN UniProtKB/TrEMBL
  A0A0G2JMM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JMP8_HUMAN UniProtKB/TrEMBL
  A0A0G2JNC6_HUMAN UniProtKB/TrEMBL
  A0A0G2JP95_HUMAN UniProtKB/TrEMBL
  A0A0G2JPL6 ENTREZGENE, UniProtKB/TrEMBL
  C9JFU4_HUMAN UniProtKB/TrEMBL
  Q7Z404 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q7Z5M3 UniProtKB/Swiss-Prot
  Q8N5E4 UniProtKB/Swiss-Prot
  Q8TBS7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 TMC4  transmembrane channel like 4    transmembrane channel-like 4  Symbol and/or name change 5135510 APPROVED