Zfp35 (zinc finger protein 35) - Rat Genome Database

Name: Zfp35
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp35 (zinc finger protein 35) Rattus norvegicus

Analyze

Symbol:

Zfp35

Name:

zinc finger protein 35

RGD ID:

1312031

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II; INTERACTS WITH 17beta-estradiol (ortholog); acrylamide (ortholog); aflatoxin B1 (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC307547; MGC108880; Zfp239; zinc finger protein 239; zinc finger protein 271

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF79 (zinc finger protein 79)	HGNC	Panther
Chinchilla lanigera (long-tailed chinchilla):	Znf79 (zinc finger protein 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF79 (zinc finger protein 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF79 (zinc finger protein 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF79 (zinc finger protein 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF79 (zinc finger protein 79)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF391 (zinc finger protein 391)	HGNC	Panther
Alliance orthologs ³
Mus musculus (house mouse):	Zfp35 (zinc finger protein 35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf1136 (zinc finger protein 1136)	Alliance	DIOPT (Hieranoid\|OMA)
Caenorhabditis elegans (roundworm):	Y55F3AM.14	Alliance	DIOPT (Hieranoid\|InParanoid\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,453,988 - 15,469,485 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,236,692 - 16,252,190 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,526,432 - 15,541,938 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	15,776,229 - 15,791,877 (+)	NCBI
Celera	18	15,217,050 - 15,232,381 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy (ISO)

developmental and epileptic encephalopathy 31A (ISO)

early infantile epileptic encephalopathy (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

leflunomide (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

quercetin (ISO)

resorcinol (ISO)

resveratrol (ISO)

sunitinib (ISO)

testosterone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

inflammatory response to antigenic stimulus (IEA)

negative regulation of T-helper 2 cell differentiation (IEA)

regulation of transcription by RNA polymerase II (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19783676

Genomics

Comparative Map Data

Zfp35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	15,453,988 - 15,469,485 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	16,236,692 - 16,252,190 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	15,526,432 - 15,541,938 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	15,776,229 - 15,791,877 (+)	NCBI
Celera	18	15,217,050 - 15,232,381 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

ZNF79
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	127,424,382 - 127,445,372 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	127,424,374 - 127,445,372 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	130,186,661 - 130,207,651 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	129,226,482 - 129,247,471 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	127,266,214 - 127,287,204	NCBI
Celera	9	100,837,528 - 100,858,526 (+)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	99,802,632 - 99,823,635 (+)	NCBI		HuRef
CHM1_1	9	130,337,099 - 130,358,946 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	139,631,324 - 139,652,321 (+)	NCBI		T2T-CHM13v2.0

Znf79
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955419	1,157,721 - 1,168,330 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF79
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	11,911,311 - 11,932,400 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	98,548,125 - 98,565,632 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	127,238,713 - 127,239,349 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

ZNF79
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	55,900,765 - 55,916,326 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	55,900,911 - 55,915,770 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	55,104,542 - 55,120,100 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	56,822,116 - 56,837,840 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	56,822,272 - 56,837,818 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	55,581,820 - 55,597,582 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	55,896,859 - 55,912,625 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	55,987,591 - 56,003,544 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF79
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	267,942,101 - 267,966,192 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	267,941,953 - 267,959,754 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	301,852,461 - 301,870,278 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF79
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	10,683,634 - 10,704,116 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	10,683,852 - 10,698,004 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	5,510,648 - 5,531,887 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Zfp35
53 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	36
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000073081
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)	18	2249477	22066430	Rat
1641910	Colcr3	Colorectal carcinoma resistance QTL 3	5.02	0.000007	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	2249477	22066430	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	11944273	26548295	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	11944273	26548295	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	11944273	26548295	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	11944273	26548295	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	11944273	26548295	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	11944273	26548295	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944273	26548295	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	11944299	24797117	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat

Markers in Region

D18Mit14

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	15,275,597 - 15,275,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	15,889,927 - 15,890,022	NCBI	Rnor6.0
Rnor_5.0	18	15,655,536 - 15,655,631	UniSTS	Rnor5.0
RGSC_v3.4	18	15,756,328 - 15,756,424	RGD	RGSC3.4
RGSC_v3.4	18	15,756,329 - 15,756,424	UniSTS	RGSC3.4
RGSC_v3.1	18	15,782,975 - 15,783,070	RGD
Celera	18	15,223,795 - 15,223,890	UniSTS
RH 3.4 Map	18	177.6	UniSTS
RH 3.4 Map	18	177.6	RGD
RH 2.0 Map	18	706.5	RGD
SHRSP x BN Map	18	8.17	RGD
FHH x ACI Map	18	10.57	RGD
Cytogenetic Map	18	p12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	11	4	17	4			72	20	36	11
Low	3	41	46	37	2	37	8	11	2	15	5		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000076137 ⟹ ENSRNOP00000067944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	15,268,814 - 15,285,088 (+)	Ensembl
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,821 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088353 ⟹ ENSRNOP00000071577

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	15,883,182 - 15,898,796 (+)	Ensembl

RefSeq Acc Id:

NM_001013141 ⟹ NP_001013159

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	15,268,852 - 15,284,334 (+)	NCBI
Rnor_6.0	18	15,883,182 - 15,898,803 (+)	NCBI
Rnor_5.0	18	15,648,791 - 15,664,412 (+)	NCBI
RGSC_v3.4	18	15,749,584 - 15,765,238 (+)	RGD
Celera	18	15,217,050 - 15,232,381 (+)	RGD

Sequence:

show sequence

CGGTTCCTGGCCTAACATTCTGTGGACAGCAAGTCTGCTCACTGGTCCTTTCATTCAACTGCAT
GAACGTCCGAAATGTTGGGGCTGATGCCATAACGGAGTGGATGAGCCCACACCAATCAGCCTGC
AGAGCTGGAAAAGAGATACCTGACCTAAACTCTAGTCTCAGAAATGACATCACTCCTCTGTACA
ACGATTCTCATCTGAGCTCGGAGCTACCAAGTTGCCTGCTGGCTTCAGACCATTATGTGGACAA
GAGGATCCTACAGAAGAAATGGTAATTCTCCAGCTGCTTACTGAGGTGTCCAGTTCTGCCCTAT
GGAGATCCAATTCAGTTACGAATCTCAAGACCATCACTTTCTCTCAGATGGTGAGGTTCAGATC
AAGATCGGAGAGCCAGCCACAGAGGAGGAAATGACAGGAGAGATTGAAACACTGACTGAAGAGT
CTGGCAGCTCCCAGGCTGATGATGCCCACAATTCCAAAGGCAGCGGATTCTTTGAGTTTGGGGA
TGAATTGAATGATCAGATGCTCTTTGGAAGAAGACAGTATAACTGCGACGAATGTGGCCAAAGC
TTTGCTTGGAATACAGGTCTTATTAGGCACCAAAGAACTCACTGGAAACCTTACGAATGTGAAG
AATGTGGAAAGGCCTTTCGGATGAGCTCAGCCCTGGTTCTACATCAGAGAATTCATACTGGAGA
AAAGCCCTATCCTTGTAGTTGGTGTATTAAAAGTTTTAGTCGGAGCTCAGACCTTATTAAACAT
CAAAGAGTCCACACGGGTGAAAAACCTTACAAGTGTGATGAGTGTGGGAAGGCCTTCAGTCAGA
GCTCAGACCTTATGACACACCAGAGAATCCACACAGGAGAAAAACCCTACCAATGTAGTCATTG
TAGTAAAAGCTTTAGCCAGCACTCAGGCATGGTTAAACATCTGAGAATCCACACTGGAGAGAAA
CCTTATATGTGTAACCATTGTTACAAACATTTCAGTCAGAGCTCTGATCTCATAAAACATGAGA
GAATCCACACTGGGGAGAAGCCGTATAAGTGTGATGTGTGTGGGAAGGCCTTCAGTCAGAGCTC
AGATCGTATTCTCCATCAAAGAATCCACACTGGGGAGAAGCCATATCCATGTGCTCAGTGTAAC
AAGAGTTTTAGTCAGAATTCAGACCTTATTAAACACAGAAGGATTCACACTGGCGAGAAGCCAT
ATCAGTGCAGTGAATGTGGGAAGGCTTTTAACCAGAGCTCAGTCCTTATTCTGCATCAAAGAAT
TCATACTGGAGAGAAACCCTATCCATGTAATCAGTGTGCCAAAAGCTTCAGTAGGCTTTCAGAT
CTTATTAACCATCAACGAATTCACACCGGAGAGAAGCCTTACCCATGTAGTCAGTGCAGTAAAA
TGTTTAGTAGAAGGTCCGATCTTGTTAAACATTATCGAATCCACACTGGGGAGAAGCCCTATGA
GTGTGATAAATGTGGCAAGACTTTCAGTCAGAGTTCCAACCTTATTCTCCACCAGAGAATCCAC
ACTGGAGAAAAACCATACCCTTGCAACAGTTGTTCTAAAAGTTTTAGTCGAGGTTCAGATCTCA
TAAAGCATCAAAGAGTACACACTGGAGAAAAACCATATACTTGTAATCTGTGCAATAAGAGCTT
TAGTCAAAGTTCAGACCTCACTAAACATCAGAGAGTGCATTCTGGCGAGAAGCCCTACCACTGT
AGTAGTTGTAACAAAGCCTTTCGTCAGAGCTCTGACCTTATTCTCCACTACAGAGTTCACACAG
GAGAAAGACCATATGCGTGTACACAGTGCACCAGAAGTTTCAGTCAAAAGTCAGACCTTATTAA
ACACCAGAGAGTTCACACTGGAGAGAAGCCATATAAATGTGTGTGTGGGAAGGCCTTCAGTCAG
TGCTCAGCCTTTACCCTTCATCAGAGAATCCACACTGGAGAGAGGCCATATCCATGTGCTCAGT
GTGGCAAAAGCTTCACCCAGCGCTCTGATCTAGTTAACCATCAAAGAGTCCACACTGGTCAAAA
GCCACAAATGTAATACCTGTGTGAAACCTTCAGCGCCATGACCAGTCTTACCGGATAGCAGAGG
GTGTGCCCAGAGCCATTAGCAGCTTTTCTGAAATGGGAAAAAGTGAGAAAGTCCTGCTTGACAG
GCAGATTTCCCGGCCTGCTTATGGAAAAATAAGAGAAGGTGTGCTTGAGGCTCAAGGTGAGGGG
CCGAAGATTTGCCCTTGGTGGAAGAAACAGGGAGGTTATTTGATGGGAACAGATGTCTTACTGT
ATATTGCAGCAAATTGCTTCTGTTGGCTTATGGCTTTGCTTCCACAATACTGTAGCATAAGAAG
GCTGTGAGAACTACACTCACTGCTGGCGTGGCATAGATCTGCGGCCCTCCCGTACCTGTCTTGC
ATCTTTTTTTTTTTTTTTTTTATCTTTCCTATAATCAGCCTCACTCTCCCCACAGAGACTGTTC
AACTTTGTGCCATCCAGACTAATACCAGGATCCACATAAAAGAACTTCTGATCTCATGTTCAGG
GTAGCTGATATTTTAACAAATCTTATCTTGGTGATTTTAAGTAAATCCATTCTAGGCAGGCACA
TGTCTTTAATTTTAGCACTTGGGAGGCAGAGGCAAGTGGATCTCTAACTTCAAGGCTCTCCAGG
GCTACATAGAAAAGTCTGAGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTATCGAGC
GCAAGGCCCTGGGTTCGGTCCCCAGGTCTGAAAAAAAAAAAAAAAAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001013159	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89850	(Get FASTA)	NCBI Sequence Viewer
	EDL76125	(Get FASTA)	NCBI Sequence Viewer
	EDL76126	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001013159 ⟸ NM_001013141

- UniProtKB:

Q5FVP4 (UniProtKB/TrEMBL), A0A096MJ05 (UniProtKB/TrEMBL), A0A9K3Y763 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEIQFSYESQDHHFLSDGEVQIKIGEPATEEEMTGEIETLTEESGSSQADDAHNSKGSGFFEFG
DELNDQMLFGRRQYNCDECGQSFAWNTGLIRHQRTHWKPYECEECGKAFRMSSALVLHQRIHTG
EKPYPCSWCIKSFSRSSDLIKHQRVHTGEKPYKCDECGKAFSQSSDLMTHQRIHTGEKPYQCSH
CSKSFSQHSGMVKHLRIHTGEKPYMCNHCYKHFSQSSDLIKHERIHTGEKPYKCDVCGKAFSQS
SDRILHQRIHTGEKPYPCAQCNKSFSQNSDLIKHRRIHTGEKPYQCSECGKAFNQSSVLILHQR
IHTGEKPYPCNQCAKSFSRLSDLINHQRIHTGEKPYPCSQCSKMFSRRSDLVKHYRIHTGEKPY
ECDKCGKTFSQSSNLILHQRIHTGEKPYPCNSCSKSFSRGSDLIKHQRVHTGEKPYTCNLCNKS
FSQSSDLTKHQRVHSGEKPYHCSSCNKAFRQSSDLILHYRVHTGERPYACTQCTRSFSQKSDLI
KHQRVHTGEKPYKCVCGKAFSQCSAFTLHQRIHTGERPYPCAQCGKSFTQRSDLVNHQRVHTGQ
KPQM

hide sequence

RefSeq Acc Id:

ENSRNOP00000071577 ⟸ ENSRNOT00000088353

RefSeq Acc Id:

ENSRNOP00000067944 ⟸ ENSRNOT00000076137

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K0T7-F1-model_v2	AlphaFold	A0A0G2K0T7	1-580	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1312031	AgrOrtholog
BioCyc Gene	G2FUF-8166	BioCyc
Ensembl Genes	ENSRNOG00000049137	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000067944	ENTREZGENE
	ENSRNOP00000067944.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000076137	ENTREZGENE
	ENSRNOT00000076137.3	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7375328	IMAGE-MGC_LOAD
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307547	UniProtKB/TrEMBL
MGC_CLONE	MGC:108880	IMAGE-MGC_LOAD
NCBI Gene	307547	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 391	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/TrEMBL
PhenoGen	Zfp35	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A096MJ05	ENTREZGENE
	A0A9K3Y763	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVP4	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A096MJ05	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zfp35	zinc finger protein 35	Zfp239	zinc finger protein 239	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp239	zinc finger protein 239	Zfp239_predicted	zinc finger protein 239 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Zfp239_predicted	zinc finger protein 239 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar