Kctd9 (potassium channel tetramerization domain containing 9) - Rat Genome Database

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Gene: Kctd9 (potassium channel tetramerization domain containing 9) Rattus norvegicus
Analyze
Symbol: Kctd9
Name: potassium channel tetramerization domain containing 9
RGD ID: 1312010
Description: Predicted to enable cullin family protein binding activity and identical protein binding activity. Predicted to be involved in intracellular signal transduction and protein homooligomerization. Predicted to act upstream of or within several processes, including NK T cell lineage commitment; natural killer cell activation; and response to virus. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BTB/POZ domain-containing protein KCTD9; LOC364410; potassium channel tetramerisation domain containing 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,117,211 - 46,145,258 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1546,117,874 - 46,145,266 (+)EnsemblGRCr8
mRatBN7.21541,942,165 - 41,969,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,942,381 - 41,969,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1543,807,174 - 43,834,525 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,957,395 - 44,984,746 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,402,708 - 43,430,079 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,411,591 - 44,439,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,411,865 - 44,439,236 (+)Ensemblrn6Rnor6.0
Rnor_5.01547,157,550 - 47,185,524 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41547,272,273 - 47,300,689 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1541,606,740 - 41,634,111 (+)NCBICelera
RGSC_v3.11547,288,063 - 47,316,332 (+)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21516116   PMID:21873635   PMID:26334369  


Genomics

Comparative Map Data
Kctd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81546,117,211 - 46,145,258 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1546,117,874 - 46,145,266 (+)EnsemblGRCr8
mRatBN7.21541,942,165 - 41,969,862 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1541,942,381 - 41,969,862 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1543,807,174 - 43,834,525 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01544,957,395 - 44,984,746 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01543,402,708 - 43,430,079 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01544,411,591 - 44,439,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1544,411,865 - 44,439,236 (+)Ensemblrn6Rnor6.0
Rnor_5.01547,157,550 - 47,185,524 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41547,272,273 - 47,300,689 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1541,606,740 - 41,634,111 (+)NCBICelera
RGSC_v3.11547,288,063 - 47,316,332 (+)NCBI
Cytogenetic Map15p12NCBI
KCTD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38825,427,847 - 25,458,433 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl825,427,847 - 25,458,476 (-)Ensemblhg38GRCh38
GRCh37825,285,363 - 25,315,949 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36825,341,280 - 25,371,837 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34825,341,282 - 25,371,837NCBI
Celera824,246,240 - 24,277,531 (-)NCBICelera
Cytogenetic Map8p21.2NCBI
HuRef823,830,337 - 23,860,955 (-)NCBIHuRef
CHM1_1825,486,843 - 25,517,450 (-)NCBICHM1_1
T2T-CHM13v2.0825,703,069 - 25,733,653 (-)NCBIT2T-CHM13v2.0
Kctd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391467,953,536 - 67,979,760 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1467,953,386 - 67,979,759 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381467,716,086 - 67,742,310 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1467,715,937 - 67,742,310 (+)Ensemblmm10GRCm38
MGSCv371468,334,155 - 68,360,367 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361466,669,615 - 66,695,491 (+)NCBIMGSCv36mm8
Celera1465,473,744 - 65,499,952 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1434.66NCBI
Kctd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540348,349,354 - 48,373,903 (-)Ensembl
ChiLan1.0NW_00495540348,349,349 - 48,373,903 (-)NCBIChiLan1.0ChiLan1.0
KCTD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2743,969,230 - 43,999,404 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1819,683,578 - 19,713,632 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0824,708,896 - 24,739,197 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1821,618,042 - 21,648,309 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl821,618,042 - 21,648,309 (-)EnsemblpanPan2panpan1.1
KCTD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12531,998,344 - 32,035,575 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2531,996,289 - 32,034,089 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2532,582,210 - 32,620,208 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02532,196,430 - 32,234,869 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2532,196,518 - 32,233,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12532,152,127 - 32,190,542 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02532,001,626 - 32,040,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02532,167,633 - 32,205,839 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kctd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049439,997,450 - 10,021,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367571,250,039 - 1,276,089 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367571,250,089 - 1,276,089 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCTD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl149,455,071 - 9,517,691 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1149,453,086 - 9,517,686 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21410,607,869 - 10,682,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCTD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1823,552,420 - 23,581,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl823,554,235 - 23,581,950 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605218,585,362 - 18,615,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kctd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475820,454,965 - 20,488,868 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475820,454,965 - 20,490,302 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Kctd9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11256,735,920 - 56,763,665 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kctd9
112 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:377
Count of miRNA genes:216
Interacting mature miRNAs:275
Transcripts:ENSRNOT00000017566
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
2306968Anxrr23Anxiety related response QTL 234.83reflex trait (VT:0001961)amplitude of the acoustic startle response (CMO:0001520)154480677352597086Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154446544756583797Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
RH143269  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21541,968,431 - 41,968,640 (+)MAPPERmRatBN7.2
Rnor_6.01544,437,806 - 44,438,014NCBIRnor6.0
Rnor_5.01547,159,181 - 47,159,389UniSTSRnor5.0
RGSC_v3.41547,299,259 - 47,299,467UniSTSRGSC3.4
Celera1541,632,681 - 41,632,889UniSTS
Cytogenetic Map15p12UniSTS
RH137151  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21541,969,436 - 41,969,655 (+)MAPPERmRatBN7.2
Rnor_6.01544,438,811 - 44,439,029NCBIRnor6.0
Rnor_5.01547,158,166 - 47,158,384UniSTSRnor5.0
RGSC_v3.41547,300,264 - 47,300,482UniSTSRGSC3.4
Celera1541,633,686 - 41,633,904UniSTS
Cytogenetic Map15p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000017566   ⟹   ENSRNOP00000017566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1546,117,874 - 46,145,266 (+)Ensembl
mRatBN7.2 Ensembl1541,942,491 - 41,969,862 (+)Ensembl
Rnor_6.0 Ensembl1544,411,865 - 44,439,236 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105780   ⟹   ENSRNOP00000095973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1541,942,428 - 41,969,859 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112078   ⟹   ENSRNOP00000082382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1546,131,758 - 46,141,546 (+)Ensembl
mRatBN7.2 Ensembl1541,942,381 - 41,966,150 (+)Ensembl
RefSeq Acc Id: NM_001108871   ⟹   NP_001102341
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,887 - 46,145,258 (+)NCBI
mRatBN7.21541,942,491 - 41,969,862 (+)NCBI
Rnor_6.01544,411,865 - 44,439,236 (+)NCBI
Rnor_5.01547,157,550 - 47,185,524 (-)NCBI
RGSC_v3.41547,272,273 - 47,300,689 (+)RGD
Celera1541,606,740 - 41,634,111 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252138   ⟹   XP_006252200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,878 - 46,145,118 (+)NCBI
mRatBN7.21541,942,427 - 41,969,724 (+)NCBI
Rnor_6.01544,411,868 - 44,439,645 (+)NCBI
Rnor_5.01547,157,550 - 47,185,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252141   ⟹   XP_006252203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,129,325 - 46,145,118 (+)NCBI
mRatBN7.21541,942,165 - 41,969,722 (+)NCBI
Rnor_6.01544,411,591 - 44,439,645 (+)NCBI
Rnor_5.01547,157,550 - 47,185,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252142   ⟹   XP_006252204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,747 - 46,145,118 (+)NCBI
mRatBN7.21541,942,375 - 41,969,722 (+)NCBI
Rnor_6.01544,411,712 - 44,439,645 (+)NCBI
Rnor_5.01547,157,550 - 47,185,524 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063274487   ⟹   XP_063130557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,878 - 46,141,510 (+)NCBI
RefSeq Acc Id: XM_063274488   ⟹   XP_063130558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,561 - 46,145,118 (+)NCBI
RefSeq Acc Id: XM_063274489   ⟹   XP_063130559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,118,275 - 46,145,118 (+)NCBI
RefSeq Acc Id: XM_063274490   ⟹   XP_063130560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,211 - 46,145,118 (+)NCBI
RefSeq Acc Id: XM_063274491   ⟹   XP_063130561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81546,117,767 - 46,145,118 (+)NCBI
RefSeq Acc Id: NP_001102341   ⟸   NM_001108871
- UniProtKB: D3ZE91 (UniProtKB/TrEMBL),   A6K6Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252203   ⟸   XM_006252141
- Peptide Label: isoform X3
- UniProtKB: A6K6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252204   ⟸   XM_006252142
- Peptide Label: isoform X3
- UniProtKB: A6K6Q1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252200   ⟸   XM_006252138
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AP15 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017566   ⟸   ENSRNOT00000017566
Ensembl Acc Id: ENSRNOP00000095973   ⟸   ENSRNOT00000105780
Ensembl Acc Id: ENSRNOP00000082382   ⟸   ENSRNOT00000112078
RefSeq Acc Id: XP_063130560   ⟸   XM_063274490
- Peptide Label: isoform X3
- UniProtKB: A6K6Q1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130558   ⟸   XM_063274488
- Peptide Label: isoform X3
- UniProtKB: A6K6Q1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130561   ⟸   XM_063274491
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130557   ⟸   XM_063274487
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063130559   ⟸   XM_063274489
- Peptide Label: isoform X3
- UniProtKB: A6K6Q1 (UniProtKB/TrEMBL)
Protein Domains
BTB   KHA   Potassium channel tetramerisation-type BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZE91-F1-model_v2 AlphaFold D3ZE91 1-389 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699764
Promoter ID:EPDNEW_R10287
Type:single initiation site
Name:Kctd9_1
Description:potassium channel tetramerization domain containing 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01544,411,957 - 44,412,017EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1312010 AgrOrtholog
BioCyc Gene G2FUF-13303 BioCyc
Ensembl Genes ENSRNOG00000012951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017566 ENTREZGENE
  ENSRNOT00000017566.7 UniProtKB/TrEMBL
  ENSRNOT00000112078 ENTREZGENE
  ENSRNOT00000112078.2 UniProtKB/TrEMBL
Gene3D-CATH E3 ubiquitin-protein ligase SopA UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro 5peptide_repeat UniProtKB/TrEMBL
  BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
  DUF3354 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv_tetra UniProtKB/TrEMBL
  Pentapeptide-BTB/POZ_domain UniProtKB/TrEMBL
KEGG Report rno:364410 UniProtKB/TrEMBL
NCBI Gene 364410 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD9 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam DUF3354 UniProtKB/TrEMBL
  K_tetra UniProtKB/TrEMBL
  Pentapeptide UniProtKB/TrEMBL
PhenoGen Kctd9 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  KHA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012951 RatGTEx
SMART BTB UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  Pentapeptide repeat-like UniProtKB/TrEMBL
  SSF89837 UniProtKB/TrEMBL
UniProt A0A8I5ZX26_RAT UniProtKB/TrEMBL
  A0A8I6AP15 ENTREZGENE
  A6K6Q0 ENTREZGENE, UniProtKB/TrEMBL
  A6K6Q1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZE91 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-07-09 Kctd9  potassium channel tetramerization domain containing 9  Kctd9  potassium channel tetramerisation domain containing 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Kctd9  potassium channel tetramerisation domain containing 9   Kctd9_predicted  potassium channel tetramerisation domain containing 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kctd9_predicted  potassium channel tetramerisation domain containing 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED