Slc39a11 (solute carrier family 39, member 11)

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Gene: Slc39a11 (solute carrier family 39, member 11) Rattus norvegicus

Analyze

Symbol:

Slc39a11

Name:

solute carrier family 39, member 11

RGD ID:

1311981

Description:

Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in zinc ion transmembrane transport. Predicted to be located in Golgi apparatus; nucleus; and plasma membrane. Predicted to be active in membrane. Orthologous to human SLC39A11 (solute carrier family 39 member 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrotoluene; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC287796; solute carrier family 39 (metal ion transporter), member 11; solute carrier family 39 member 11; zinc transporter ZIP11; ZIP-11; zrt- and Irt-like protein 11

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC39A11 (solute carrier family 39 member 11)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, Panther, PhylomeDB
Mus musculus (house mouse):	Slc39a11 (solute carrier family 39 (metal ion transporter), member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc39a11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC39A11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC39A11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc39a11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC39A11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC39A11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc39a11 (solute carrier family 39 member 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC39A11 (solute carrier family 39 member 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc39a11 (solute carrier family 39 (metal ion transporter), member 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	zipt-11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Zip48C	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc39a11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	98,275,958 - 98,697,042 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,275,960 - 98,611,295 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	103,339,869 - 103,663,521 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	102,802,903 - 103,126,556 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	98,197,396 - 98,531,352 (-)	NCBI	Rnor_WKY
Rnor_6.0	10	101,754,842 - 102,169,100 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	101,754,830 - 102,084,035 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	102,863,399 - 103,189,081 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	102,877,768 - 103,203,451 (-)	NCBI
Celera	10	96,892,699 - 97,219,427 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

high grade glioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrotoluene (EXP)

2,4-dinitrotoluene (EXP)

2,6-di-tert-butyl-4-methylphenol (ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

7,12-dimethyltetraphene (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cyproconazole (ISO)

dexamethasone (ISO)

dopamine (EXP)

dorsomorphin (ISO)

epoxiconazole (ISO)

fenoldopam (EXP)

formaldehyde (ISO)

glycidol (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

inulin (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

N-acetyl-1,4-benzoquinone imine (ISO)

O-methyleugenol (ISO)

ozone (ISO)

p-toluidine (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

thioacetamide (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

metal ion transport (IEA)

transmembrane transport (IEA)

zinc ion transmembrane transport (IBA,IEA)

Cellular Component

cytoplasm (ISO,ISS)

Golgi apparatus (IEA,ISO,ISS)

membrane (IBA,IEA)

nucleus (IEA,ISO,ISS)

plasma membrane (IEA,ISO,ISS)

Molecular Function

metal ion transmembrane transporter activity (IEA)

zinc ion transmembrane transporter activity (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21702047	PMID:23643525	PMID:24089422

Genomics

Comparative Map Data

Slc39a11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	98,275,958 - 98,697,042 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,275,960 - 98,611,295 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	103,339,869 - 103,663,521 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	102,802,903 - 103,126,556 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	98,197,396 - 98,531,352 (-)	NCBI	Rnor_WKY
Rnor_6.0	10	101,754,842 - 102,169,100 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	101,754,830 - 102,084,035 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	102,863,399 - 103,189,081 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	102,877,768 - 103,203,451 (-)	NCBI
Celera	10	96,892,699 - 97,219,427 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

SLC39A11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	72,645,949 - 73,092,688 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	72,645,949 - 73,092,712 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	70,642,088 - 71,088,827 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	68,153,683 - 68,600,427 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	68,153,683 - 68,600,427	NCBI
Celera	17	67,213,461 - 67,671,934 (-)	NCBI		Celera
Cytogenetic Map	17	q24.3-q25.1	NCBI
HuRef	17	66,033,664 - 66,497,349 (-)	NCBI		HuRef
CHM1_1	17	70,705,944 - 71,153,067 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	73,518,976 - 73,981,577 (-)	NCBI		T2T-CHM13v2.0

Slc39a11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	113,135,677 - 113,541,050 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	113,135,679 - 113,540,905 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	113,244,851 - 113,650,200 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	113,244,853 - 113,650,079 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	113,106,169 - 113,427,129 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	113,060,944 - 113,381,858 (-)	NCBI		MGSCv36	mm8
Celera	11	134,571,484 - 134,573,124 (-)	NCBI		Celera
Celera	11	125,002,068 - 125,320,378 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI

Slc39a11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	123,887 - 489,791 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	123,873 - 489,704 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC39A11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	93,468,319 - 93,934,134 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	66,554,202 - 67,019,899 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	72,012,486 - 72,476,865 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	72,014,122 - 72,472,918 (-)	Ensembl	panpan1.1		panPan2

SLC39A11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	6,978,031 - 7,244,985 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	7,601,802 - 8,003,712 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	7,653,100 - 8,055,260 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	7,724,580 - 8,055,230 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	7,693,507 - 8,096,086 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	7,796,370 - 8,197,028 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	7,857,406 - 8,260,622 (+)	NCBI		UU_Cfam_GSD_1.0

Slc39a11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	7,534,401 - 7,709,948 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	1,103,728 - 1,442,716 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936655	1,103,805 - 1,208,723 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC39A11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	7,759,820 - 8,204,246 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	7,759,732 - 8,204,249 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	8,040,168 - 8,500,314 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC39A11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	48,440,063 - 48,999,755 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	48,440,108 - 49,000,037 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	19,261,446 - 19,827,471 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc39a11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	2,734,544 - 3,196,570 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	2,734,761 - 3,226,349 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc39a11
2553 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	115
Count of miRNA genes:	90
Interacting mature miRNAs:	91
Transcripts:	ENSRNOT00000042156
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1558652	Bw57	Body weight QTL 57	4.2	0.0008	body mass (VT:0001259)	body weight (CMO:0000012)	10	90910316	107211142	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91228102	104060283	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	92238497	101012337	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat
631539	Oia6	Oil induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	97010147	104670812	Rat

Markers in Region

D10Rat201

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,279,434 - 98,279,596 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,758,317 - 101,758,478	NCBI	Rnor6.0
Rnor_5.0	10	101,432,195 - 101,432,356	UniSTS	Rnor5.0
RGSC_v3.4	10	102,865,474 - 102,865,929	RGD	RGSC3.4
RGSC_v3.4	10	102,865,504 - 102,865,665	UniSTS	RGSC3.4
RGSC_v3.1	10	102,879,844 - 102,880,299	RGD
Celera	10	96,894,804 - 96,894,965	UniSTS
RH 3.4 Map	10	1119.0	UniSTS
RH 3.4 Map	10	1119.0	RGD
SHRSP x BN Map	10	83.68	UniSTS
SHRSP x BN Map	10	83.68	RGD
Cytogenetic Map	10	q32.1	UniSTS

D10Rat230

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,334,951 - 98,335,153 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,814,047 - 101,814,248	NCBI	Rnor6.0
Rnor_5.0	10	101,487,925 - 101,488,126	UniSTS	Rnor5.0
RGSC_v3.4	10	102,920,914 - 102,921,116	RGD	RGSC3.4
RGSC_v3.4	10	102,920,915 - 102,921,116	UniSTS	RGSC3.4
RGSC_v3.1	10	102,935,284 - 102,935,486	RGD
Celera	10	96,949,941 - 96,950,142	UniSTS
SHRSP x BN Map	10	84.82	UniSTS
SHRSP x BN Map	10	84.82	RGD
Cytogenetic Map	10	q32.1	UniSTS

D10Rat231

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,554,101 - 98,554,338 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,032,317 - 102,032,553	NCBI	Rnor6.0
Rnor_5.0	10	101,705,454 - 101,705,690	UniSTS	Rnor5.0
RGSC_v3.4	10	103,140,164 - 103,140,401	RGD	RGSC3.4
RGSC_v3.4	10	103,140,165 - 103,140,401	UniSTS	RGSC3.4
RGSC_v3.1	10	103,154,534 - 103,154,771	RGD
Celera	10	97,168,598 - 97,168,834	UniSTS
SHRSP x BN Map	10	83.4	UniSTS
SHRSP x BN Map	10	83.4	RGD
Cytogenetic Map	10	q32.1	UniSTS

AU048139

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,466,486 - 98,466,631 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,944,808 - 101,944,952	NCBI	Rnor6.0
Rnor_5.0	10	101,618,518 - 101,618,662	UniSTS	Rnor5.0
RGSC_v3.4	10	103,052,433 - 103,052,577	UniSTS	RGSC3.4
Celera	10	97,081,114 - 97,081,258	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

D7Arb609a

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,302,467 - 98,303,434 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,780,904 - 101,781,870	NCBI	Rnor6.0
Rnor_5.0	10	101,454,782 - 101,455,748	UniSTS	Rnor5.0
RGSC_v3.4	10	102,888,434 - 102,889,400	UniSTS	RGSC3.4
Celera	10	96,917,468 - 96,918,434	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH141506

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,456,253 - 98,456,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,934,575 - 101,934,754	NCBI	Rnor6.0
Rnor_5.0	10	101,608,285 - 101,608,464	UniSTS	Rnor5.0
RGSC_v3.4	10	103,042,202 - 103,042,381	UniSTS	RGSC3.4
Celera	10	97,070,876 - 97,071,055	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

fc37g07.x1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,279,538 - 98,280,010 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	101,758,421 - 101,758,892	NCBI	Rnor6.0
Rnor_5.0	10	101,432,299 - 101,432,770	UniSTS	Rnor5.0
RGSC_v3.4	17	22,612,449 - 22,613,616	UniSTS	RGSC3.4
RGSC_v3.4	10	102,865,608 - 102,866,079	UniSTS	RGSC3.4
Celera	17	16,199,374 - 16,200,543	UniSTS
Celera	10	96,894,908 - 96,895,379	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3		8						35	2	21	1
Low		43	49	41	19	41	8	11	39	33	20	10	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC062054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000042156 ⟹ ENSRNOP00000039028

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,275,960 - 98,608,165 (-)	Ensembl
Rnor_6.0 Ensembl	10	101,754,830 - 102,084,035 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097833 ⟹ ENSRNOP00000091972

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,277,328 - 98,611,295 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108406 ⟹ ENSRNOP00000083419

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,277,328 - 98,608,570 (-)	Ensembl

RefSeq Acc Id:

NM_001013042 ⟹ NP_001013060

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,277,328 - 98,611,295 (-)	NCBI
Rnor_6.0	10	101,756,212 - 102,083,480 (-)	NCBI
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI
RGSC_v3.4	10	102,863,399 - 103,189,081 (-)	RGD
Celera	10	96,892,699 - 97,219,427 (-)	RGD

Sequence:

show sequence

GCTGGAGTGAAGCAGGAAGTGACTGTCGGAGTGGAGCCAGGCGAGCGAGTGGCATCGGGGGCTG
ATGGAAGTGGAGAGGGGGCTGGAGAGGGCACCCTACTGTATCCAGCATGCTTCAAGGTTACAGC
TCTGTTTCCCAGGCCTTGCTGGGGACCTTCTTCACCTGGGCAATGACAGCGGCGGGAGCGGCTC
TCGTGTTCATATTCTCCAGTGGGCAGAGGCGGATCTTAGATGGAAGCCTGGGTTTTGCTGCAGG
GGTCATGTTAGCAGCTTCCTATTGGTCGCTGCTTGCACCAGCGGTTGAGATGGCCACCTCCTCA
GGGGGCTTTGGTGCCTTCGCCTTCTTCCCAGTGGCCGTTGGCTTCACCCTGGGAGCTGCTTTTG
TCTACCTGGCTGACCTCCTGATGCCCCACCTGGGTGCTGGAGAAGACCCCCAGACGGCCCTGGC
GCTGAACTTGGACCCTGCATTGGTGAAGAAGTCTGATCTCAAGGACCCCGCCTCACTGCTCTTC
CCCGAGAGGGAACTTTCCATCCGGATAGACAAGCGTGAGAATGGCGAGGTGTACCAGAGGAAGA
AGCTGGCAGCTACCGACTTCCCAGAGGGCGCGGCCCCCTCAGGACCTGTGCACGGGAACTCAGG
GCAACCCGGGGTGAGCAGCTGGAGGAGAATTGCTCTGCTCATCCTGGCCATCACCATACACAAC
ATTCCAGAGGGTCTCGCTGTCGGTGTAGGGTTTGGAGCAGTAGAAAAGACTGCATCTGCCACCT
TCGAGAGTGCCAGGAATCTGGCCATTGGAATTGGGATTCAAAATTTCCCAGAGGGCCTGGCTGT
CAGCCTTCCTCTGCGTGGAGCAGGCTTCTCTACCTGGAAAGCTTTCTGGTATGGACAGCTGAGC
GGCATGGTGGAGCCCTTGGCTGGGGTCTTTGGAGCCTTTGCGGTGGTGCTGGCTGAGCCCGTCT
TGCCCTACGCGCTGGCCTTTGCCGCCGGTGCCATGGTCTACGTGGTCATGGACGACATCATCCC
CGAAGCCCAGATCAGTGGCAACGGGAAACTGGCATCCTGGGCCTCCATCCTGGGATTTGTGGTG
ATGATGTCCCTTGACGTGGGCCTCGGCTAGCTCTGAGAACCTTGGGACCCCATGAAGGAAAGCA
CCAGACTTCTGCAGGACCATGAGCCTCTCTTCACATTAAAACCCCATTCCTTTCTCCCCTCCGT
CTCCTTACCCCAGATCAGCTCTGATTACATTTTTTTTTTTTTTGACTTTCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247664 ⟹ XP_006247726

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,608,260 (-)	NCBI
Rnor_6.0	10	101,754,842 - 102,080,572 (-)	NCBI
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI

Sequence:

show sequence

TTCAGCAGCTAATTTCCAGCGGATGGCCATACCCGCTTTCACAAGGCTGTGGGAAAGTGTCGCC
ACCCTTCTCAAGCAGTTACAAGTCTAAGTTACAGATGTAGGCAGGCTCCCATAGAAAACAGCCA
AGATCTGTTTGGATGTGGTGGGGAGGGGGTGTCATAGAAGGTTTCATCACAGATCTGGCATGAG
GTGGGCCTCAGAGGAGGCTCTTGGGTTTCGAGGGTAGGAGCTGTGGAGGGAAGGCATCCTCGAA
GGGGCTTATGCGAACGGAACCACGAGGCACAGCTCTCTGGGTTGGAAAGGTGCCCTAATGAACT
GAGTTGAATGGGAGTGTGGTGCCCCTACTGCGCGCTGCTGGACTTCGCCTGGAGAGTCCATGGG
GGTGGGAAGGTCTGTCAGTGGAATTCACTCTGTGTGTGGCTTGAAGAGCCAGGAAGGTGTGACC
AAGAATCCGATGGAAGCTGTATCCAGCATGCTTCAAGGTTACAGCTCTGTTTCCCAGGCCTTGC
TGGGGACCTTCTTCACCTGGGCAATGACAGCGGCGGGAGCGGCTCTCGTGTTCATATTCTCCAG
TGGGCAGAGGCGGATCTTAGATGGAAGCCTGGGTTTTGCTGCAGGGGTCATGTTAGCAGCTTCC
TATTGGTCGCTGCTTGCACCAGCGGTTGAGATGGCCACCTCCTCAGGGGGCTTTGGTGCCTTCG
CCTTCTTCCCAGTGGCCGTAGGCTTCACCCTGGGAGCTGCTTTTGTCTACCTGGCTGACCTCCT
GATGCCCCACCTGGGTGCTGGAGAAGACCCCCAGACGGCCCTGGCGCTGAACTTGGACCCTGCA
TTGGTGAAGAAGTCTGATCTCAAGGACCCCGCCTCACTGCTCTTCCCCGAGAGGGAACTTTCCA
TCCGGATAGGTAGCACTGTGCTTCTTTCAGACAAGCGTGAGAATGGCGAGGTGTACCAGAGGAA
GAAGCTGGCAGCTACCGACTTCCCAGAGGGCGCGGCCCCCTCAGGACCTGTGCACGGGAACTCA
GGGCAACCCGGGGTGAGCAGCTGGAGGAGAATTGCTCTGCTCATCCTGGCCATCACCATACACA
ACATTCCAGAGGGTCTCGCTGTCGGTGTAGGGTTTGGAGCAGTAGAAAAGACTGCATCTGCCAC
CTTCGAGAGTGCCAGGAATCTGGCCATTGGAATTGGGATTCAAAATTTCCCAGAGGGCCTGGCT
GTCAGCCTTCCTCTGCGTGGAGCAGGCTTCTCTACCTGGAAAGCTTTCTGGTATGGACAGCTGA
GCGGCATGGTGGAGCCCTTGGCTGGGGTCTTTGGAGCCTTTGCGGTGGTGCTGGCTGAGCCCGT
CTTGCCCTACGCGCTGGCCTTTGCCGCCGGTGCCATGGTCTACGTGGTCATGGACGACATCATC
CCCGAAGCCCAGATCAGTGGCAACGGGAAACTGGCATCCTGGGCCTCCATCCTGGGATTTGTGG
TGATGATGTCCCTTGACGTGGGCCTCGGCTAGCTCTGAGAACCTTGGGACCCCATGAAGGAAAG
CACCAGACTTCTGCAGGACCATGAGCCTCTCTTCACATTAAAACCCCATTCCTTTCTCCCCTCC
GTCTCCTTACCCCAGATCAGCTCTGATTACATTTTTTTTTTTTTTTGACTTTCCGTTTTGCTTT
GGAGGGAGAAGCTGGTTTTCTTTGTAAATCTCAAGGTGTCATAGAACTGTAGATTTGTGTTTTG
GCCACTGAGTGGAAGGAATCTTTCTTCAGTGGGTAACCCCTACTGTCCCACCTCCGGTCTCCCT
TTCTAGACTCAACTTCAACACCTCAGGGTCACCTCCAGAAGTCAGCTCCTGGGATACAAGCTCT
GAGCATGTTGGCCTAAGGTTTTGGAGCAGGTTGCCAGGGCCCCTAGTGCTCCTTCTCCATGGAC
CCTCTGTCCATCTAGGATGCCGGGACAGAAGCAACAGGAACACAGAAGCCTGCTCGCCAAGGCT
GAACCAGCGTAACAGGGTCTGCTTCCTCCAGGGAGGCACGCACAGGAAGGCCCACACACCGAGA
GCAGGAAGTCAGCTTGTCTCTCTCCTAAAGATGGGCACTGCTGAAGTTAGAGAAATATGGAAAC
AAGGGTGACCATGAACATGCAGCGCTCTGAAGAGTGCCGTGAGTAGGTTTTAAGCTGAGCCCCC
TCCCCCCCACGTCCCCGCTCTTTGTAGAGGACAAGAGCAGGCACTTAGTCCTGGCTCCCAGGTC
TCCTAGCTATTAATCTTGATGTGTTTATAGCCTTTGTTTTCCTGAGAGACTTGTGGATACCAGC
AAATTGCAAATACACAACCCCTCATTGACTCACAGAGTCACTTAAGTCAACTCTAGGGAATGAC
ATGCAGAGCCCGACAAGGCTTCTTCTCCGCTGGCCCTTTGGAAGCTTACAAGCCAGAGCCGCTG
AGCTTCTGCAGAAGCTTTGTGGGAATCTGGCCAGCAGGCTTCTAGTGGGGAAGGAAAGGGGAGG
AAGAAGAGGTATTTTTTACATTTCCTTTCTTAGAAAACTCAAAACTCTGAGGTGATCCTGAAGA
ATGACTGGACCTTGACTACATGCTAACCTGCTCCATCATACATGTCGCTCCACCATCTGCCCTC
CCAACGCATCAGCCCTGAGCCCTCCCTGGCTGGGGAGTGTGTGGGACTCAGAGAAAAGGCTTCA
CCCGGGAGCCAGGCACTTGGGTACTGGGTTCTCAGTATCTGCCCTCTGTGTTTACATGTTCCGT
CCATCCATGGATGGATACTGTAGTCTGTGAATGCTCAAGATCCCAGAGGCCAACCTCGGCCGGA
TGTGTCTGTTCTTCTGAAAGCACTTGATGATCAAAAAGACACATCCAGAGATCTGATTGGTTGA
GGTTAGCTGGTTTGGTGATTGGCACGTGTGTATATTTCTATCCTTACGTCTCCGTGTGTCGTTC
TGTTGCTGCAAATCACCCTTTCTGCTGGATAAGACCTCGTAACTGTGATTCATGTCAATAAAGG
GAATTTTGTCGTGCA

hide sequence

RefSeq Acc Id:

XM_006247668 ⟹ XP_006247730

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,611,538 (-)	NCBI
Rnor_6.0	10	101,754,842 - 102,083,542 (-)	NCBI
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI

Sequence:

show sequence

TATTCTCCAGGCAGGATTCGCCAGTTGCGAAGGGGCGGGGCCGGTGGTGGAGGGCCACGTGTGC
TGGAGTGAAGCAGGAAGTGACTGTCGGAGTGGAGCCAGGCGAGCGAGTGGCATCGGGGGCTGAT
GGAAGTGGAGAGGGGGCTGGAGAGGGCACCCTACTGTATCCAGCATGCTTCAAGGTTACAGCTC
TGTTTCCCAGGCCTTGCTGGGGACCTTCTTCACCTGGGCAATGACAGCGGCGGGAGCGGCTCTC
GTGTTCATATTCTCCAGTGGGCAGAGGCGGATCTTAGATGGAAGCCTGGGTTTTGCTGCAGGGG
TCATGTTAGCAGCTTCCTATTGGTCGCTGCTTGCACCAGCGGTTGAGATGGCCACCTCCTCAGG
GGGCTTTGGTGCCTTCGCCTTCTTCCCAGTGGCCGTAGGCTTCACCCTGGGAGCTGCTTTTGTC
TACCTGGCTGACCTCCTGATGCCCCACCTGGGTGCTGGAGAAGACCCCCAGACGGCCCTGGCGC
TGAACTTGGACCCTGCATTGGTGAAGAAGTCTGATCTCAAGGACCCCGCCTCACTGCTCTTCCC
CGAGAGGGAACTTTCCATCCGGATAGGTAGCACTGTGCTTCTTTCAGACAAGCGTGAGAATGGC
GAGGTGTACCAGAGGAAGAAGCTGGCAGCTACCGACTTCCCAGAGGGCGCGGCCCCCTCAGGAC
CTGTGCACGGGAACTCAGGGCAACCCGGGGTGAGCAGCTGGAGGAGAATTGCTCTGCTCATCCT
GGCCATCACCATACACAACATTCCAGAGGGTCTCGCTGTCGGTGTAGGGTTTGGAGCAGTAGAA
AAGACTGCATCTGCCACCTTCGAGAGTGCCAGGAATCTGGCCATTGGAATTGGGATTCAAAATT
TCCCAGAGGGCCTGGCTGTCAGCCTTCCTCTGCGTGGAGCAGGCTTCTCTACCTGGAAAGCTTT
CTGGTATGGACAGCTGAGCGGCATGGTGGAGCCCTTGGCTGGGGTCTTTGGAGCCTTTGCGGTG
GTGCTGGCTGAGCCCGTCTTGCCCTACGCGCTGGCCTTTGCCGCCGGTGCCATGGTCTACGTGG
TCATGGACGACATCATCCCCGAAGCCCAGATCAGTGGCAACGGGAAACTGGCATCCTGGGCCTC
CATCCTGGGATTTGTGGTGATGATGTCCCTTGACGTGGGCCTCGGCTAGCTCTGAGAACCTTGG
GACCCCATGAAGGAAAGCACCAGACTTCTGCAGGACCATGAGCCTCTCTTCACATTAAAACCCC
ATTCCTTTCTCCCCTCCGTCTCCTTACCCCAGATCAGCTCTGATTACATTTTTTTTTTTTTTTG
ACTTTCCGTTTTGCTTTGGAGGGAGAAGCTGGTTTTCTTTGTAAATCTCAAGGTGTCATAGAAC
TGTAGATTTGTGTTTTGGCCACTGAGTGGAAGGAATCTTTCTTCAGTGGGTAACCCCTACTGTC
CCACCTCCGGTCTCCCTTTCTAGACTCAACTTCAACACCTCAGGGTCACCTCCAGAAGTCAGCT
CCTGGGATACAAGCTCTGAGCATGTTGGCCTAAGGTTTTGGAGCAGGTTGCCAGGGCCCCTAGT
GCTCCTTCTCCATGGACCCTCTGTCCATCTAGGATGCCGGGACAGAAGCAACAGGAACACAGAA
GCCTGCTCGCCAAGGCTGAACCAGCGTAACAGGGTCTGCTTCCTCCAGGGAGGCACGCACAGGA
AGGCCCACACACCGAGAGCAGGAAGTCAGCTTGTCTCTCTCCTAAAGATGGGCACTGCTGAAGT
TAGAGAAATATGGAAACAAGGGTGACCATGAACATGCAGCGCTCTGAAGAGTGCCGTGAGTAGG
TTTTAAGCTGAGCCCCCTCCCCCCCACGTCCCCGCTCTTTGTAGAGGACAAGAGCAGGCACTTA
GTCCTGGCTCCCAGGTCTCCTAGCTATTAATCTTGATGTGTTTATAGCCTTTGTTTTCCTGAGA
GACTTGTGGATACCAGCAAATTGCAAATACACAACCCCTCATTGACTCACAGAGTCACTTAAGT
CAACTCTAGGGAATGACATGCAGAGCCCGACAAGGCTTCTTCTCCGCTGGCCCTTTGGAAGCTT
ACAAGCCAGAGCCGCTGAGCTTCTGCAGAAGCTTTGTGGGAATCTGGCCAGCAGGCTTCTAGTG
GGGAAGGAAAGGGGAGGAAGAAGAGGTATTTTTTACATTTCCTTTCTTAGAAAACTCAAAACTC
TGAGGTGATCCTGAAGAATGACTGGACCTTGACTACATGCTAACCTGCTCCATCATACATGTCG
CTCCACCATCTGCCCTCCCAACGCATCAGCCCTGAGCCCTCCCTGGCTGGGGAGTGTGTGGGAC
TCAGAGAAAAGGCTTCACCCGGGAGCCAGGCACTTGGGTACTGGGTTCTCAGTATCTGCCCTCT
GTGTTTACATGTTCCGTCCATCCATGGATGGATACTGTAGTCTGTGAATGCTCAAGATCCCAGA
GGCCAACCTCGGCCGGATGTGTCTGTTCTTCTGAAAGCACTTGATGATCAAAAAGACACATCCA
GAGATCTGATTGGTTGAGGTTAGCTGGTTTGGTGATTGGCACGTGTGTATATTTCTATCCTTAC
GTCTCCGTGTGTCGTTCTGTTGCTGCAAATCACCCTTTCTGCTGGATAAGACCTCGTAACTGTG
ATTCATGTCAATAAAGGGAATTTTGTCGTGCA

hide sequence

RefSeq Acc Id:

XM_006247670 ⟹ XP_006247732

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,697,021 (-)	NCBI
Rnor_6.0	10	101,754,842 - 102,169,100 (-)	NCBI
Rnor_5.0	10	101,428,720 - 101,848,639 (-)	NCBI

Sequence:

show sequence

TGGAAGAGCAGTCAGTGCCCTTAACCACTGAGCCACCTGTCCAGCCCTTCTGCTGCCATTCTAA
ATTATTCATATTAAAATTCAACTTCCCATGGATTTATTTAATTAGAATGCAAACGTCAAGAAAA
GATTGGGAGGCTCCTGTTTGATTTGAGCGGAGAGGGTGTTCCCCCAGAAATGCATCAGCCATAA
CTATGAAAATCAATACATTTCTAAAACCAGGCCTACACAGCTGAAAGTTAGCCAGCTAAGTCTG
TCCGTTTGAGAAGGGAACTGTATTTAATGTATAGATTAGGCCGATATAGTTCCAACCTTCTTCG
GCCACTTTCATTATACTGCCCTAGTCCTTTTGCTTGGGTTTTTTGACACTCAGGGAGCACGAGA
AAGCTAGTGCCACATGAGGGTTAGTTAGTGTGCTTTTGCAATTTCTTCTGCTGTTACAGTAAGT
TCTTCTAGGTTAAAACTATTCACCCTCCTGTGTCCTCTGCTCATCCCTAGGACAACACCCTACG
TTAGGATGAGCTTCCCACCTCATCATTCTGCATCTGGTCTTTAATCTTTCAGGGAAGGGCGTCA
GGATGGCCTGAATATTCTAAACCAGCCTTCCTTGCCTAAAATGAAACTGTTCACCTATTAAAAG
GGGGAGGGCCTGACGGCTGAGGCTACCCTCCCCCAATTCTCCAGGCTCGGGAGCAGGGTTGGGT
AAAGAATGAATGACTTTGACAGGAAGGAGTGAGTGACTGTCGAGAGACCCCTGGCGTTTTCAGT
TGAAAGGGAAGGAGAGCGCAGGGAACCCACAGGAGGCGAGGGAATCGTCCGGAAATCCGGGAAG
GATCCTGGAGCAAAAGGCCGGCTGACTTTTCGGCAGCGGACCAGCGTCCCGAGGAAGGGCCGCA
GACGCCTCCCAGAAGCACACAGCGGCGTGAGGGGCGGGCTCCTCCGGCGGAAGCTGTATCCAGC
ATGCTTCAAGGTTACAGCTCTGTTTCCCAGGCCTTGCTGGGGACCTTCTTCACCTGGGCAATGA
CAGCGGCGGGAGCGGCTCTCGTGTTCATATTCTCCAGTGGGCAGAGGCGGATCTTAGATGGAAG
CCTGGGTTTTGCTGCAGGGGTCATGTTAGCAGCTTCCTATTGGTCGCTGCTTGCACCAGCGGTT
GAGATGGCCACCTCCTCAGGGGGCTTTGGTGCCTTCGCCTTCTTCCCAGTGGCCGTAGGCTTCA
CCCTGGGAGCTGCTTTTGTCTACCTGGCTGACCTCCTGATGCCCCACCTGGGTGCTGGAGAAGA
CCCCCAGACGGCCCTGGCGCTGAACTTGGACCCTGCATTGGTGAAGAAGTCTGATCTCAAGGAC
CCCGCCTCACTGCTCTTCCCCGAGAGGGAACTTTCCATCCGGATAGGTAGCACTGTGCTTCTTT
CAGACAAGCGTGAGAATGGCGAGGTGTACCAGAGGAAGAAGCTGGCAGCTACCGACTTCCCAGA
GGGCGCGGCCCCCTCAGGACCTGTGCACGGGAACTCAGGGCAACCCGGGGTGAGCAGCTGGAGG
AGAATTGCTCTGCTCATCCTGGCCATCACCATACACAACATTCCAGAGGGTCTCGCTGTCGGTG
TAGGGTTTGGAGCAGTAGAAAAGACTGCATCTGCCACCTTCGAGAGTGCCAGGAATCTGGCCAT
TGGAATTGGGATTCAAAATTTCCCAGAGGGCCTGGCTGTCAGCCTTCCTCTGCGTGGAGCAGGC
TTCTCTACCTGGAAAGCTTTCTGGTATGGACAGCTGAGCGGCATGGTGGAGCCCTTGGCTGGGG
TCTTTGGAGCCTTTGCGGTGGTGCTGGCTGAGCCCGTCTTGCCCTACGCGCTGGCCTTTGCCGC
CGGTGCCATGGTCTACGTGGTCATGGACGACATCATCCCCGAAGCCCAGATCAGTGGCAACGGG
AAACTGGCATCCTGGGCCTCCATCCTGGGATTTGTGGTGATGATGTCCCTTGACGTGGGCCTCG
GCTAGCTCTGAGAACCTTGGGACCCCATGAAGGAAAGCACCAGACTTCTGCAGGACCATGAGCC
TCTCTTCACATTAAAACCCCATTCCTTTCTCCCCTCCGTCTCCTTACCCCAGATCAGCTCTGAT
TACATTTTTTTTTTTTTTTGACTTTCCGTTTTGCTTTGGAGGGAGAAGCTGGTTTTCTTTGTAA
ATCTCAAGGTGTCATAGAACTGTAGATTTGTGTTTTGGCCACTGAGTGGAAGGAATCTTTCTTC
AGTGGGTAACCCCTACTGTCCCACCTCCGGTCTCCCTTTCTAGACTCAACTTCAACACCTCAGG
GTCACCTCCAGAAGTCAGCTCCTGGGATACAAGCTCTGAGCATGTTGGCCTAAGGTTTTGGAGC
AGGTTGCCAGGGCCCCTAGTGCTCCTTCTCCATGGACCCTCTGTCCATCTAGGATGCCGGGACA
GAAGCAACAGGAACACAGAAGCCTGCTCGCCAAGGCTGAACCAGCGTAACAGGGTCTGCTTCCT
CCAGGGAGGCACGCACAGGAAGGCCCACACACCGAGAGCAGGAAGTCAGCTTGTCTCTCTCCTA
AAGATGGGCACTGCTGAAGTTAGAGAAATATGGAAACAAGGGTGACCATGAACATGCAGCGCTC
TGAAGAGTGCCGTGAGTAGGTTTTAAGCTGAGCCCCCTCCCCCCCACGTCCCCGCTCTTTGTAG
AGGACAAGAGCAGGCACTTAGTCCTGGCTCCCAGGTCTCCTAGCTATTAATCTTGATGTGTTTA
TAGCCTTTGTTTTCCTGAGAGACTTGTGGATACCAGCAAATTGCAAATACACAACCCCTCATTG
ACTCACAGAGTCACTTAAGTCAACTCTAGGGAATGACATGCAGAGCCCGACAAGGCTTCTTCTC
CGCTGGCCCTTTGGAAGCTTACAAGCCAGAGCCGCTGAGCTTCTGCAGAAGCTTTGTGGGAATC
TGGCCAGCAGGCTTCTAGTGGGGAAGGAAAGGGGAGGAAGAAGAGGTATTTTTTACATTTCCTT
TCTTAGAAAACTCAAAACTCTGAGGTGATCCTGAAGAATGACTGGACCTTGACTACATGCTAAC
CTGCTCCATCATACATGTCGCTCCACCATCTGCCCTCCCAACGCATCAGCCCTGAGCCCTCCCT
GGCTGGGGAGTGTGTGGGACTCAGAGAAAAGGCTTCACCCGGGAGCCAGGCACTTGGGTACTGG
GTTCTCAGTATCTGCCCTCTGTGTTTACATGTTCCGTCCATCCATGGATGGATACTGTAGTCTG
TGAATGCTCAAGATCCCAGAGGCCAACCTCGGCCGGATGTGTCTGTTCTTCTGAAAGCACTTGA
TGATCAAAAAGACACATCCAGAGATCTGATTGGTTGAGGTTAGCTGGTTTGGTGATTGGCACGT
GTGTATATTTCTATCCTTACGTCTCCGTGTGTCGTTCTGTTGCTGCAAATCACCCTTTCTGCTG
GATAAGACCTCGTAACTGTGATTCATGTCAATAAAGGGAATTTTGTCGTGCA

hide sequence

RefSeq Acc Id:

XM_017597148 ⟹ XP_017452637

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,611,786 (-)	NCBI
Rnor_6.0	10	101,754,842 - 102,083,817 (-)	NCBI

Sequence:

show sequence

ACTGGCTCCGTAGCTCCGTTAGGACTTATGTGGTCGTCATGCTTAGGACCTATGACAAAAGATG
TAGACAACATTAAGTAGCTGTATCCAGCATGCTTCAAGGTTACAGCTCTGTTTCCCAGGCCTTG
CTGGGGACCTTCTTCACCTGGGCAATGACAGCGGCGGGAGCGGCTCTCGTGTTCATATTCTCCA
GTGGGCAGAGGCGGATCTTAGATGGAAGCCTGGGTTTTGCTGCAGGGGTCATGTTAGCAGCTTC
CTATTGGTCGCTGCTTGCACCAGCGGTTGAGATGGCCACCTCCTCAGGGGGCTTTGGTGCCTTC
GCCTTCTTCCCAGTGGCCGTAGGCTTCACCCTGGGAGCTGCTTTTGTCTACCTGGCTGACCTCC
TGATGCCCCACCTGGGTGCTGGAGAAGACCCCCAGACGGCCCTGGCGCTGAACTTGGACCCTGC
ATTGGTGAAGAAGTCTGATCTCAAGGACCCCGCCTCACTGCTCTTCCCCGAGAGGGAACTTTCC
ATCCGGATAGGTAGCACTGTGCTTCTTTCAGACAAGCGTGAGAATGGCGAGGTGTACCAGAGGA
AGAAGCTGGCAGCTACCGACTTCCCAGAGGGCGCGGCCCCCTCAGGACCTGTGCACGGGAACTC
AGGGCAACCCGGGGTGAGCAGCTGGAGGAGAATTGCTCTGCTCATCCTGGCCATCACCATACAC
AACATTCCAGAGGGTCTCGCTGTCGGTGTAGGGTTTGGAGCAGTAGAAAAGACTGCATCTGCCA
CCTTCGAGAGTGCCAGGAATCTGGCCATTGGAATTGGGATTCAAAATTTCCCAGAGGGCCTGGC
TGTCAGCCTTCCTCTGCGTGGAGCAGGCTTCTCTACCTGGAAAGCTTTCTGGTATGGACAGCTG
AGCGGCATGGTGGAGCCCTTGGCTGGGGTCTTTGGAGCCTTTGCGGTGGTGCTGGCTGAGCCCG
TCTTGCCCTACGCGCTGGCCTTTGCCGCCGGTGCCATGGTCTACGTGGTCATGGACGACATCAT
CCCCGAAGCCCAGATCAGTGGCAACGGGAAACTGGCATCCTGGGCCTCCATCCTGGGATTTGTG
GTGATGATGTCCCTTGACGTGGGCCTCGGCTAGCTCTGAGAACCTTGGGACCCCATGAAGGAAA
GCACCAGACTTCTGCAGGACCATGAGCCTCTCTTCACATTAAAACCCCATTCCTTTCTCCCCTC
CGTCTCCTTACCCCAGATCAGCTCTGATTACATTTTTTTTTTTTTTTGACTTTCCGTTTTGCTT
TGGAGGGAGAAGCTGGTTTTCTTTGTAAATCTCAAGGTGTCATAGAACTGTAGATTTGTGTTTT
GGCCACTGAGTGGAAGGAATCTTTCTTCAGTGGGTAACCCCTACTGTCCCACCTCCGGTCTCCC
TTTCTAGACTCAACTTCAACACCTCAGGGTCACCTCCAGAAGTCAGCTCCTGGGATACAAGCTC
TGAGCATGTTGGCCTAAGGTTTTGGAGCAGGTTGCCAGGGCCCCTAGTGCTCCTTCTCCATGGA
CCCTCTGTCCATCTAGGATGCCGGGACAGAAGCAACAGGAACACAGAAGCCTGCTCGCCAAGGC
TGAACCAGCGTAACAGGGTCTGCTTCCTCCAGGGAGGCACGCACAGGAAGGCCCACACACCGAG
AGCAGGAAGTCAGCTTGTCTCTCTCCTAAAGATGGGCACTGCTGAAGTTAGAGAAATATGGAAA
CAAGGGTGACCATGAACATGCAGCGCTCTGAAGAGTGCCGTGAGTAGGTTTTAAGCTGAGCCCC
CTCCCCCCCACGTCCCCGCTCTTTGTAGAGGACAAGAGCAGGCACTTAGTCCTGGCTCCCAGGT
CTCCTAGCTATTAATCTTGATGTGTTTATAGCCTTTGTTTTCCTGAGAGACTTGTGGATACCAG
CAAATTGCAAATACACAACCCCTCATTGACTCACAGAGTCACTTAAGTCAACTCTAGGGAATGA
CATGCAGAGCCCGACAAGGCTTCTTCTCCGCTGGCCCTTTGGAAGCTTACAAGCCAGAGCCGCT
GAGCTTCTGCAGAAGCTTTGTGGGAATCTGGCCAGCAGGCTTCTAGTGGGGAAGGAAAGGGGAG
GAAGAAGAGGTATTTTTTACATTTCCTTTCTTAGAAAACTCAAAACTCTGAGGTGATCCTGAAG
AATGACTGGACCTTGACTACATGCTAACCTGCTCCATCATACATGTCGCTCCACCATCTGCCCT
CCCAACGCATCAGCCCTGAGCCCTCCCTGGCTGGGGAGTGTGTGGGACTCAGAGAAAAGGCTTC
ACCCGGGAGCCAGGCACTTGGGTACTGGGTTCTCAGTATCTGCCCTCTGTGTTTACATGTTCCG
TCCATCCATGGATGGATACTGTAGTCTGTGAATGCTCAAGATCCCAGAGGCCAACCTCGGCCGG
ATGTGTCTGTTCTTCTGAAAGCACTTGATGATCAAAAAGACACATCCAGAGATCTGATTGGTTG
AGGTTAGCTGGTTTGGTGATTGGCACGTGTGTATATTTCTATCCTTACGTCTCCGTGTGTCGTT
CTGTTGCTGCAAATCACCCTTTCTGCTGGATAAGACCTCGTAACTGTGATTCATGTCAATAAAG
GGAATTTTGTCGTGCA

hide sequence

RefSeq Acc Id:

XM_039085655 ⟹ XP_038941583

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,608,588 (-)	NCBI

RefSeq Acc Id:

XM_039085656 ⟹ XP_038941584

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,609,533 (-)	NCBI

RefSeq Acc Id:

XM_039085657 ⟹ XP_038941585

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,697,042 (-)	NCBI

RefSeq Acc Id:

XM_039085658 ⟹ XP_038941586

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,394,127 - 98,607,578 (-)	NCBI

RefSeq Acc Id:

XM_039085659 ⟹ XP_038941587

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,394,127 - 98,607,578 (-)	NCBI

RefSeq Acc Id:

XM_039085660 ⟹ XP_038941588

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	10	98,275,958 - 98,458,242 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013060	(Get FASTA)	NCBI Sequence Viewer
	XP_006247726	(Get FASTA)	NCBI Sequence Viewer
	XP_006247730	(Get FASTA)	NCBI Sequence Viewer
	XP_006247732	(Get FASTA)	NCBI Sequence Viewer
	XP_017452637	(Get FASTA)	NCBI Sequence Viewer
	XP_038941583	(Get FASTA)	NCBI Sequence Viewer
	XP_038941584	(Get FASTA)	NCBI Sequence Viewer
	XP_038941585	(Get FASTA)	NCBI Sequence Viewer
	XP_038941586	(Get FASTA)	NCBI Sequence Viewer
	XP_038941587	(Get FASTA)	NCBI Sequence Viewer
	XP_038941588	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62054	(Get FASTA)	NCBI Sequence Viewer
	EDM06511	(Get FASTA)	NCBI Sequence Viewer
	EDM06512	(Get FASTA)	NCBI Sequence Viewer
	EDM06513	(Get FASTA)	NCBI Sequence Viewer
	Q6P6S2	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001013060 ⟸ NM_001013042

- UniProtKB:

Q6P6S2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLQGYSSVSQALLGTFFTWAMTAAGAALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAV
EMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLGAGEDPQTALALNLDPALVKKSDLKD
PASLLFPERELSIRIDKRENGEVYQRKKLAATDFPEGAAPSGPVHGNSGQPGVSSWRRIALLIL
AITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAGFSTWKAF
WYGQLSGMVEPLAGVFGAFAVVLAEPVLPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWAS
ILGFVVMMSLDVGLG

hide sequence

RefSeq Acc Id:

XP_006247732 ⟸ XM_006247670

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLQGYSSVSQALLGTFFTWAMTAAGAALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAV
EMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLGAGEDPQTALALNLDPALVKKSDLKD
PASLLFPERELSIRIGSTVLLSDKRENGEVYQRKKLAATDFPEGAAPSGPVHGNSGQPGVSSWR
RIALLILAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAG
FSTWKAFWYGQLSGMVEPLAGVFGAFAVVLAEPVLPYALAFAAGAMVYVVMDDIIPEAQISGNG
KLASWASILGFVVMMSLDVGLG

hide sequence

RefSeq Acc Id:

XP_006247730 ⟸ XM_006247668

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLQGYSSVSQALLGTFFTWAMTAAGAALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAV
EMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLGAGEDPQTALALNLDPALVKKSDLKD
PASLLFPERELSIRIGSTVLLSDKRENGEVYQRKKLAATDFPEGAAPSGPVHGNSGQPGVSSWR
RIALLILAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAG
FSTWKAFWYGQLSGMVEPLAGVFGAFAVVLAEPVLPYALAFAAGAMVYVVMDDIIPEAQISGNG
KLASWASILGFVVMMSLDVGLG

hide sequence

RefSeq Acc Id:	XP_006247726 ⟸ XM_006247664
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QK09 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGVGRSVSGIHSVCGLKSQEGVTKNPMEAVSSMLQGYSSVSQALLGTFFTWAMTAAGAALVFIF SSGQRRILDGSLGFAAGVMLAASYWSLLAPAVEMATSSGGFGAFAFFPVAVGFTLGAAFVYLAD LLMPHLGAGEDPQTALALNLDPALVKKSDLKDPASLLFPERELSIRIGSTVLLSDKRENGEVYQ RKKLAATDFPEGAAPSGPVHGNSGQPGVSSWRRIALLILAITIHNIPEGLAVGVGFGAVEKTAS ATFESARNLAIGIGIQNFPEGLAVSLPLRGAGFSTWKAFWYGQLSGMVEPLAGVFGAFAVVLAE PVLPYALAFAAGAMVYVVMDDIIPEAQISGNGKLASWASILGFVVMMSLDVGLG hide sequence

RefSeq Acc Id:

XP_017452637 ⟸ XM_017597148

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLQGYSSVSQALLGTFFTWAMTAAGAALVFIFSSGQRRILDGSLGFAAGVMLAASYWSLLAPAV
EMATSSGGFGAFAFFPVAVGFTLGAAFVYLADLLMPHLGAGEDPQTALALNLDPALVKKSDLKD
PASLLFPERELSIRIGSTVLLSDKRENGEVYQRKKLAATDFPEGAAPSGPVHGNSGQPGVSSWR
RIALLILAITIHNIPEGLAVGVGFGAVEKTASATFESARNLAIGIGIQNFPEGLAVSLPLRGAG
FSTWKAFWYGQLSGMVEPLAGVFGAFAVVLAEPVLPYALAFAAGAMVYVVMDDIIPEAQISGNG
KLASWASILGFVVMMSLDVGLG

hide sequence

RefSeq Acc Id:

ENSRNOP00000039028 ⟸ ENSRNOT00000042156

RefSeq Acc Id:	XP_038941585 ⟸ XM_039085657
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038941584 ⟸ XM_039085656
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038941583 ⟸ XM_039085655
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038941588 ⟸ XM_039085660
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038941587 ⟸ XM_039085659
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038941586 ⟸ XM_039085658
- Peptide Label:	isoform X5

RefSeq Acc Id:

ENSRNOP00000091972 ⟸ ENSRNOT00000097833

RefSeq Acc Id:

ENSRNOP00000083419 ⟸ ENSRNOT00000108406

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P6S2-F1-model_v2	AlphaFold	Q6P6S2	1-335	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311981	AgrOrtholog
BioCyc Gene	G2FUF-22766	BioCyc
Ensembl Genes	ENSRNOG00000031213	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000039028	ENTREZGENE
	ENSRNOP00000039028.5	UniProtKB/TrEMBL
	ENSRNOP00000083419.1	UniProtKB/TrEMBL
	ENSRNOP00000091972	ENTREZGENE
	ENSRNOP00000091972.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000042156	ENTREZGENE
	ENSRNOT00000042156.6	UniProtKB/TrEMBL
	ENSRNOT00000097833	ENTREZGENE
	ENSRNOT00000097833.1	UniProtKB/Swiss-Prot
	ENSRNOT00000108406.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5598901	IMAGE-MGC_LOAD
InterPro	ZIP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:287796	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72592	IMAGE-MGC_LOAD
NCBI Gene	287796	ENTREZGENE
PANTHER	ZINC TRANSPORTER ZIP11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC/IRON TRANSPORTER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Zip	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc39a11	PhenoGen
UniProt	A0A8I5ZZC3_RAT	UniProtKB/TrEMBL
	A0A8L2QK09	ENTREZGENE, UniProtKB/TrEMBL
	Q6P6S2	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Slc39a11	solute carrier family 39, member 11	Slc39a11	solute carrier family 39 (metal ion transporter), member 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Slc39a11	solute carrier family 39 (metal ion transporter), member 11	Slc39a11_predicted	solute carrier family 39 (metal ion transporter), member 11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Slc39a11_predicted	solute carrier family 39 (metal ion transporter), member 11 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar