B3galt1 (Beta-1,3-galactosyltransferase 1) - Rat Genome Database

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Pathways
Gene: B3galt1 (Beta-1,3-galactosyltransferase 1) Rattus norvegicus
Analyze
Symbol: B3galt1
Name: Beta-1,3-galactosyltransferase 1
RGD ID: 1311898
Description: Predicted to enable N-acetyl-beta-D-glucosaminide beta-(1,3)-galactosyltransferase activity. Predicted to be involved in galactosylceramide biosynthetic process; lipid glycosylation; and protein O-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane. Orthologous to human B3GALT1 (beta-1,3-galactosyltransferase 1); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC366064; UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1; UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8372,661,410 - 73,234,447 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl372,660,801 - 73,235,276 (+)EnsemblGRCr8
mRatBN7.2352,253,413 - 52,826,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl352,253,618 - 52,825,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx356,198,294 - 56,211,631 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0364,781,856 - 64,795,193 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0362,548,152 - 62,561,508 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0353,699,409 - 54,269,612 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl354,253,949 - 54,267,292 (+)Ensemblrn6Rnor6.0
Rnor_5.0360,870,422 - 60,883,765 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4350,146,767 - 50,160,110 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera352,380,792 - 52,394,125 (+)NCBICelera
RGSC_v3.1350,054,001 - 50,055,718 (+)NCBI
Cytogenetic Map3q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA)
Golgi membrane  (IBA,IEA,ISO)
membrane  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9417047   PMID:9582303   PMID:11042173  


Genomics

Comparative Map Data
B3galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8372,661,410 - 73,234,447 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl372,660,801 - 73,235,276 (+)EnsemblGRCr8
mRatBN7.2352,253,413 - 52,826,508 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl352,253,618 - 52,825,313 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx356,198,294 - 56,211,631 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0364,781,856 - 64,795,193 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0362,548,152 - 62,561,508 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0353,699,409 - 54,269,612 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl354,253,949 - 54,267,292 (+)Ensemblrn6Rnor6.0
Rnor_5.0360,870,422 - 60,883,765 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4350,146,767 - 50,160,110 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera352,380,792 - 52,394,125 (+)NCBICelera
RGSC_v3.1350,054,001 - 50,055,718 (+)NCBI
Cytogenetic Map3q21NCBI
B3GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382167,293,001 - 167,874,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2167,293,001 - 167,874,045 (+)Ensemblhg38GRCh38
GRCh372168,149,511 - 168,730,555 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362168,383,428 - 168,435,612 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342168,500,688 - 168,552,873NCBI
Celera2162,284,031 - 162,336,209 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2160,555,235 - 160,607,422 (+)NCBIHuRef
CHM1_12168,681,070 - 168,733,250 (+)NCBICHM1_1
T2T-CHM13v2.02167,750,886 - 168,331,887 (+)NCBIT2T-CHM13v2.0
B3galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39267,395,528 - 67,953,226 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl267,396,215 - 67,953,033 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38267,565,689 - 68,122,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl267,565,871 - 68,122,689 (+)Ensemblmm10GRCm38
MGSCv37267,955,770 - 67,960,747 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36267,918,567 - 67,923,529 (+)NCBIMGSCv36mm8
Celera269,793,879 - 69,798,856 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map239.53NCBI
B3galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554496,452,189 - 6,553,158 (-)Ensembl
ChiLan1.0NW_0049554496,452,189 - 7,007,329 (-)NCBIChiLan1.0ChiLan1.0
B3GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21369,934,878 - 70,509,330 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B69,949,742 - 70,524,307 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B54,550,248 - 55,124,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B172,023,342 - 172,591,939 (+)NCBIPanPan1.1PanPan1.1panPan2
B3GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13612,263,162 - 12,766,525 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3612,761,821 - 12,762,801 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3612,336,938 - 12,775,614 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03612,384,303 - 12,888,766 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13612,470,747 - 12,974,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03612,449,918 - 12,953,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03612,567,513 - 13,071,386 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
B3galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303129,484,141 - 130,096,334 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646911,589,492 - 11,590,472 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646911,586,710 - 12,133,053 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1574,335,112 - 74,339,380 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11573,772,833 - 74,340,060 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21582,904,443 - 83,311,307 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GALT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11052,792,505 - 53,368,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1053,366,522 - 53,367,499 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040146,179,848 - 146,733,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3galt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247875,578,168 - 5,579,148 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247875,040,161 - 5,582,911 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in B3galt1
5905 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:171
Count of miRNA genes:119
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000010018
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)35986366373704481Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
B3galt1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2352,821,922 - 52,822,503 (+)MAPPERmRatBN7.2
Rnor_6.0354,265,027 - 54,265,607NCBIRnor6.0
Rnor_5.0360,881,500 - 60,882,080UniSTSRnor5.0
Celera352,391,860 - 52,392,440UniSTS
Cytogenetic Map3q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
11 12 66 151 89 84 59 34 59 6 276 133 11 129 65 91 25 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010018   ⟹   ENSRNOP00000010018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,233 - 73,235,275 (+)Ensembl
mRatBN7.2 Ensembl352,810,845 - 52,824,188 (+)Ensembl
Rnor_6.0 Ensembl354,253,949 - 54,267,292 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097712   ⟹   ENSRNOP00000086959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl373,181,139 - 73,234,628 (+)Ensembl
mRatBN7.2 Ensembl352,764,511 - 52,825,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102600   ⟹   ENSRNOP00000090409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,393 - 73,234,628 (+)Ensembl
mRatBN7.2 Ensembl352,253,618 - 52,825,313 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000125515   ⟹   ENSRNOP00000112461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,044 - 73,235,275 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138050   ⟹   ENSRNOP00000106104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,660,801 - 73,235,276 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000160916   ⟹   ENSRNOP00000101475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,391 - 73,235,275 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000162858   ⟹   ENSRNOP00000100957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,230 - 73,235,275 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167879   ⟹   ENSRNOP00000098763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,661,044 - 73,235,275 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000170985   ⟹   ENSRNOP00000104470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,991,713 - 73,234,444 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172616   ⟹   ENSRNOP00000102829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl372,660,933 - 73,235,276 (+)Ensembl
RefSeq Acc Id: NM_001108954   ⟹   NP_001102424
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8373,218,784 - 73,232,127 (+)NCBI
mRatBN7.2352,810,845 - 52,824,188 (+)NCBI
Rnor_6.0354,253,949 - 54,267,292 (+)NCBI
Rnor_5.0360,870,422 - 60,883,765 (+)NCBI
RGSC_v3.4350,146,767 - 50,160,110 (+)RGD
Celera352,380,792 - 52,394,125 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591942   ⟹   XP_017447431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,410 - 73,234,447 (+)NCBI
mRatBN7.2352,253,451 - 52,826,508 (+)NCBI
Rnor_6.0353,699,409 - 54,269,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591945   ⟹   XP_017447434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,410 - 73,234,447 (+)NCBI
mRatBN7.2352,253,451 - 52,826,508 (+)NCBI
Rnor_6.0353,699,409 - 54,269,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591946   ⟹   XP_017447435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8373,078,015 - 73,234,447 (+)NCBI
mRatBN7.2352,670,108 - 52,826,508 (+)NCBI
Rnor_6.0354,114,094 - 54,269,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017591948   ⟹   XP_017447437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8373,171,687 - 73,234,447 (+)NCBI
mRatBN7.2352,764,508 - 52,826,508 (+)NCBI
Rnor_6.0354,208,704 - 54,269,612 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105589   ⟹   XP_038961517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,410 - 73,234,447 (+)NCBI
mRatBN7.2352,253,451 - 52,826,508 (+)NCBI
RefSeq Acc Id: XM_039105590   ⟹   XP_038961518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8373,113,863 - 73,234,447 (+)NCBI
mRatBN7.2352,705,913 - 52,826,508 (+)NCBI
RefSeq Acc Id: XM_063284266   ⟹   XP_063140336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,576 - 73,023,421 (+)NCBI
RefSeq Acc Id: XM_063284267   ⟹   XP_063140337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,576 - 73,023,421 (+)NCBI
RefSeq Acc Id: XM_063284268   ⟹   XP_063140338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,576 - 73,023,421 (+)NCBI
RefSeq Acc Id: XM_063284269   ⟹   XP_063140339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,576 - 73,023,421 (+)NCBI
RefSeq Acc Id: XM_063284271   ⟹   XP_063140341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8372,661,410 - 73,234,447 (+)NCBI
RefSeq Acc Id: NP_001102424   ⟸   NM_001108954
- UniProtKB: D3ZPD8 (UniProtKB/TrEMBL),   A6HLY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447431   ⟸   XM_017591942
- Peptide Label: isoform X2
- UniProtKB: D3ZPD8 (UniProtKB/TrEMBL),   A6HLY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447434   ⟸   XM_017591945
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017447435   ⟸   XM_017591946
- Peptide Label: isoform X2
- UniProtKB: D3ZPD8 (UniProtKB/TrEMBL),   A6HLY9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447437   ⟸   XM_017591948
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000010018   ⟸   ENSRNOT00000010018
RefSeq Acc Id: XP_038961517   ⟸   XM_039105589
- Peptide Label: isoform X2
- UniProtKB: D3ZPD8 (UniProtKB/TrEMBL),   A6HLY9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961518   ⟸   XM_039105590
- Peptide Label: isoform X2
- UniProtKB: D3ZPD8 (UniProtKB/TrEMBL),   A6HLY9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090409   ⟸   ENSRNOT00000102600
Ensembl Acc Id: ENSRNOP00000086959   ⟸   ENSRNOT00000097712
RefSeq Acc Id: XP_063140341   ⟸   XM_063284271
- Peptide Label: isoform X2
- UniProtKB: A6HLY9 (UniProtKB/TrEMBL),   D3ZPD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140339   ⟸   XM_063284269
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140338   ⟸   XM_063284268
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140336   ⟸   XM_063284266
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063140337   ⟸   XM_063284267
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000104470   ⟸   ENSRNOT00000170985
Ensembl Acc Id: ENSRNOP00000101475   ⟸   ENSRNOT00000160916
Ensembl Acc Id: ENSRNOP00000112461   ⟸   ENSRNOT00000125515
Ensembl Acc Id: ENSRNOP00000098763   ⟸   ENSRNOT00000167879
Ensembl Acc Id: ENSRNOP00000102829   ⟸   ENSRNOT00000172616
Ensembl Acc Id: ENSRNOP00000106104   ⟸   ENSRNOT00000138050
Ensembl Acc Id: ENSRNOP00000100957   ⟸   ENSRNOT00000162858

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPD8-F1-model_v2 AlphaFold D3ZPD8 1-326 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311898 AgrOrtholog
BioCyc Gene G2FUF-49526 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
Ensembl Genes ENSRNOG00000007625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010018 ENTREZGENE
  ENSRNOT00000010018.5 UniProtKB/TrEMBL
  ENSRNOT00000097712 ENTREZGENE
  ENSRNOT00000097712.1 UniProtKB/TrEMBL
  ENSRNOT00000102600.1 UniProtKB/TrEMBL
  ENSRNOT00000138050 ENTREZGENE
  ENSRNOT00000170985 ENTREZGENE
  ENSRNOT00000172616 ENTREZGENE
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report rno:366064 UniProtKB/TrEMBL
NCBI Gene 366064 ENTREZGENE
PANTHER BETA-1,3-GALACTOSYLTRANSFERASE 1 UniProtKB/TrEMBL
  Glyco_trans_31 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
PhenoGen B3galt1 PhenoGen
RatGTEx ENSRNOG00000007625 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A6HLY9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPD8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 B3galt1  Beta-1,3-galactosyltransferase 1  B3galt1  UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-25 B3galt1  UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1  B3galt1  UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 B3galt1  UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1   B3galt1_predicted  UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 (predicted)  'predicted' is removed 2292626 APPROVED