Slc38a9 (solute carrier family 38, member 9) - Rat Genome Database

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Gene: Slc38a9 (solute carrier family 38, member 9) Rattus norvegicus
Analyze
Symbol: Slc38a9
Name: solute carrier family 38, member 9
RGD ID: 1311881
Description: Predicted to enable several functions, including L-amino acid transmembrane transporter activity; arginine binding activity; and sterol binding activity. Predicted to be involved in amino acid transport; cellular response to amino acid stimulus; and positive regulation of TORC1 signaling. Predicted to be located in late endosome and lysosomal membrane. Orthologous to human SLC38A9 (solute carrier family 38 member 9); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310091; MGC125012; putative sodium-coupled neutral amino acid transporter 9; RGD1311881; similar to hypothetical protein FLJ90709; sodium-coupled neutral amino acid transporter 9; solute carrier family 38 member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,291,637 - 44,374,897 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,417,505 - 51,482,408 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0249,475,942 - 49,540,776 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0244,349,547 - 44,416,361 (+)NCBIRnor_WKY
Rnor_6.0244,512,556 - 44,592,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,554,196 - 63,634,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,044,770 - 44,110,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1243,961,910 - 44,040,250 (+)NCBI
Celera240,082,412 - 40,147,573 (+)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22993404   PMID:25561175   PMID:25567906   PMID:29053970   PMID:30956113  


Genomics

Comparative Map Data
Slc38a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2244,291,637 - 44,374,897 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,417,505 - 51,482,408 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0249,475,942 - 49,540,776 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0244,349,547 - 44,416,361 (+)NCBIRnor_WKY
Rnor_6.0244,512,556 - 44,592,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,554,196 - 63,634,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,044,770 - 44,110,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1243,961,910 - 44,040,250 (+)NCBI
Celera240,082,412 - 40,147,573 (+)NCBICelera
Cytogenetic Map2q14NCBI
SLC38A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,625,845 - 55,712,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl555,625,845 - 55,773,194 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,921,673 - 55,008,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,957,435 - 55,043,852 (-)NCBINCBI36Build 36hg18NCBI36
Celera551,875,777 - 51,961,881 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,895,210 - 51,981,393 (-)NCBIHuRef
CHM1_1554,925,864 - 55,012,366 (-)NCBICHM1_1
T2T-CHM13v2.0556,453,712 - 56,540,626 (-)NCBIT2T-CHM13v2.0
Slc38a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,792,723 - 112,875,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13112,797,285 - 112,875,283 (+)EnsemblGRCm39 Ensembl
GRCm3813112,656,189 - 112,738,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,660,751 - 112,738,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,450,974 - 113,528,960 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613113,781,654 - 113,853,776 (+)NCBIMGSCv36mm8
Celera13116,969,812 - 117,051,744 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
Slc38a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,042,313 - 12,132,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,042,848 - 12,132,211 (+)NCBIChiLan1.0ChiLan1.0
SLC38A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1559,936,081 - 60,020,771 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl559,944,034 - 60,020,769 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0558,312,101 - 58,397,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC38A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,921,906 - 43,004,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,922,494 - 42,991,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,968,649 - 40,050,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,387,804 - 43,470,243 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,387,807 - 43,470,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,465,898 - 40,548,267 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0241,267,439 - 41,349,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0242,088,670 - 42,171,039 (-)NCBIUU_Cfam_GSD_1.0
Slc38a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,167,196 - 203,262,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,103,693 - 12,195,358 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493648012,103,697 - 12,198,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,768,987 - 34,858,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,639,575 - 34,858,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,889,795 - 36,974,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,876,430 - 51,961,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,876,268 - 51,948,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049752,110 - 837,809 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247593,606,708 - 3,706,376 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247593,603,510 - 3,707,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc38a9
405 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:23
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000013218
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat

Markers in Region
D10S1272E  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2244,338,724 - 44,338,921 (+)MAPPERmRatBN7.2
Rnor_6.0244,559,934 - 44,560,130NCBIRnor6.0
Rnor_5.0263,601,570 - 63,601,766UniSTSRnor5.0
RGSC_v3.4244,080,644 - 44,080,840UniSTSRGSC3.4
Celera240,118,267 - 40,118,463UniSTS
Cytogenetic Map2q14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 15 14 6 16 1
Low 3 43 50 41 4 41 8 11 60 29 25 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001035251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC088241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JQ013729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000013218   ⟹   ENSRNOP00000013218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)Ensembl
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)Ensembl
RefSeq Acc Id: NM_001035251   ⟹   NP_001030328
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,302,847 - 44,368,847 (+)NCBI
Rnor_6.0244,524,060 - 44,589,470 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
RGSC_v3.4244,044,770 - 44,110,884 (+)RGD
Celera240,082,412 - 40,147,573 (+)RGD
Sequence:
RefSeq Acc Id: XM_006231929   ⟹   XP_006231991
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,291,637 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231930   ⟹   XP_006231992
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,291,707 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231931   ⟹   XP_006231993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,291,718 - 44,374,897 (+)NCBI
Rnor_6.0244,512,878 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231932   ⟹   XP_006231994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,291,895 - 44,374,897 (+)NCBI
Rnor_6.0244,513,048 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231934   ⟹   XP_006231996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231936   ⟹   XP_006231998
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231937   ⟹   XP_006231999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006231939   ⟹   XP_006232001
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2244,303,010 - 44,374,897 (+)NCBI
Rnor_6.0244,525,757 - 44,592,793 (+)NCBI
Rnor_5.0263,554,196 - 63,634,429 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001030328   ⟸   NM_001035251
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231993   ⟸   XM_006231931
- Peptide Label: isoform X1
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231992   ⟸   XM_006231930
- Peptide Label: isoform X1
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231991   ⟸   XM_006231929
- Peptide Label: isoform X1
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231994   ⟸   XM_006231932
- Peptide Label: isoform X1
- UniProtKB: R9PXU2 (UniProtKB/Swiss-Prot),   Q3B8Q3 (UniProtKB/Swiss-Prot),   H9BFG3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231998   ⟸   XM_006231936
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006232001   ⟸   XM_006231939
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006231999   ⟸   XM_006231937
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006231996   ⟸   XM_006231934
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000013218   ⟸   ENSRNOT00000013218
Protein Domains
Aa_trans

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3B8Q3-F1-model_v2 AlphaFold Q3B8Q3 1-559 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691136
Promoter ID:EPDNEW_R1661
Type:initiation region
Name:Slc38a9_1
Description:solute carrier family 38, member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0244,512,974 - 44,513,034EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311881 AgrOrtholog
BioCyc Gene G2FUF-54392 BioCyc
Ensembl Genes ENSRNOG00000009851 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000013218 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000013218 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7365694 IMAGE-MGC_LOAD
  IMAGE:7442690 IMAGE-MGC_LOAD
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:310091 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:109589 IMAGE-MGC_LOAD
  MGC:125012 IMAGE-MGC_LOAD
NCBI Gene 310091 ENTREZGENE
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc38a9 PhenoGen
UniProt H9BFG3 ENTREZGENE, UniProtKB/TrEMBL
  Q3B8Q3 ENTREZGENE
  R9PXU2 ENTREZGENE
  S38A9_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q561Z8 UniProtKB/Swiss-Prot
  R9PXU2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-11 Slc38a9  solute carrier family 38, member 9  RGD1311881  similar to hypothetical protein FLJ90709  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311881  similar to hypothetical protein FLJ90709  RGD1311881_predicted  similar to hypothetical protein FLJ90709 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311881_predicted  similar to hypothetical protein FLJ90709 (predicted)  LOC310091_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310091_predicted  similar to hypothetical protein FLJ90709 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL