Mical2 (microtubule associated monooxygenase, calponin and LIM domain containing 2) - Rat Genome Database

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Gene: Mical2 (microtubule associated monooxygenase, calponin and LIM domain containing 2) Rattus norvegicus
Analyze
Symbol: Mical2
Name: microtubule associated monooxygenase, calponin and LIM domain containing 2
RGD ID: 1311773
Description: Predicted to enable several functions, including FAD binding activity; NAD(P)H oxidase H2O2-forming activity; and mitogen-activated protein kinase binding activity. Predicted to be involved in several processes, including actin filament depolymerization; heart looping; and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be active in actin filament. Orthologous to human MICAL2 (microtubule associated monooxygenase, calponin and LIM domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: [F-actin]-methionine sulfoxide oxidase MICAL2; [F-actin]-monooxygenase MICAL2; ebitein-1; ERK2-binding testicular protein 1; F-actin-monooxygenase MICAL2; LOC365352; MICAL C-terminal like; MICAL-2; mical-cL; Micalcl; microtubule associated monoxygenase, calponin and LIM domain containing 2; molecule interacting with CasL protein 2; protein-methionine sulfoxide oxidase MICAL2; RGD1311773; RSB-11-77; similar to flavoprotein oxidoreductase MICAL2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,780,441 - 175,965,157 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,825,596 - 175,905,155 (+)EnsemblGRCr8
mRatBN7.21166,345,853 - 166,530,575 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,481,790 - 166,530,574 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1166,345,859 - 166,471,719 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1174,680,792 - 174,865,184 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,866,788 - 182,051,196 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01174,566,905 - 174,751,254 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01177,048,607 - 177,173,729 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,183,209 - 177,232,691 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1177,048,655 - 177,173,995 (+)Ensemblrn6Rnor6.0
Rnor_5.01184,162,215 - 184,211,084 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01184,027,383 - 184,152,139 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,176,936 - 170,215,812 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.41170,076,009 - 170,153,467 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1164,268,361 - 164,343,654 (+)NCBICelera
RGSC_v3.11170,150,257 - 170,273,710 (+)NCBI
RGSC_v3.11170,303,127 - 170,335,744 (+)NCBI
Cytogenetic Map1q33NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-dichloroaniline  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
estrone  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
hydrogen cyanide  (ISO)
hydrogen peroxide  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
malonaldehyde  (ISO)
menadione  (ISO)
mestranol  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
rac-lactic acid  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP,ISO)
Triptolide  (ISO)
triptonide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin filament  (IEA,ISO)
cytoplasm  (IEA,ISO,ISS)
nucleus  (IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:15632090   PMID:16230022   PMID:18241670   PMID:22673903   PMID:23911929   PMID:23927065   PMID:24440334   PMID:25931508  


Genomics

Comparative Map Data
Mical2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81175,780,441 - 175,965,157 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1175,825,596 - 175,905,155 (+)EnsemblGRCr8
mRatBN7.21166,345,853 - 166,530,575 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1166,481,790 - 166,530,574 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1166,345,859 - 166,471,719 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1174,680,792 - 174,865,184 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,866,788 - 182,051,196 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01174,566,905 - 174,751,254 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01177,048,607 - 177,173,729 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,183,209 - 177,232,691 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1177,048,655 - 177,173,995 (+)Ensemblrn6Rnor6.0
Rnor_5.01184,162,215 - 184,211,084 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01184,027,383 - 184,152,139 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41170,176,936 - 170,215,812 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
RGSC_v3.41170,076,009 - 170,153,467 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1164,268,361 - 164,343,654 (+)NCBICelera
RGSC_v3.11170,150,257 - 170,273,710 (+)NCBI
RGSC_v3.11170,303,127 - 170,335,744 (+)NCBI
Cytogenetic Map1q33NCBI
MICAL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,110,590 - 12,362,140 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,094,008 - 12,362,140 (+)Ensemblhg38GRCh38
GRCh371112,132,137 - 12,383,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361112,088,714 - 12,241,908 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1112,257,370 - 12,410,639 (+)NCBICelera
Cytogenetic Map11p15.3NCBI
HuRef1111,808,137 - 11,961,500 (+)NCBIHuRef
CHM1_11112,131,025 - 12,284,217 (+)NCBICHM1_1
T2T-CHM13v2.01112,202,447 - 12,454,129 (+)NCBIT2T-CHM13v2.0
Mical2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397111,825,032 - 112,012,311 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7111,825,063 - 112,012,313 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387112,225,825 - 112,355,194 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7112,225,856 - 112,413,106 (+)Ensemblmm10GRCm38
MGSCv377119,369,404 - 119,496,926 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367112,017,037 - 112,143,211 (+)NCBIMGSCv36mm8
Celera7112,201,145 - 112,328,456 (+)NCBICelera
Cytogenetic Map7F1NCBI
cM Map758.75NCBI
Mical2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541427,612,253 - 27,724,297 (+)Ensembl
ChiLan1.0NW_00495541427,600,823 - 27,804,232 (+)NCBIChiLan1.0ChiLan1.0
MICAL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2914,537,129 - 14,807,606 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11114,502,351 - 14,770,253 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,278,223 - 12,431,027 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11111,970,982 - 12,123,855 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1112,022,093 - 12,123,855 (+)EnsemblpanPan2panpan1.1
MICAL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12135,153,467 - 35,290,062 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2135,154,422 - 35,373,233 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2134,717,484 - 34,869,661 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02136,029,920 - 36,165,769 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2136,029,107 - 36,248,634 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12135,290,913 - 35,513,000 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02135,468,778 - 35,689,558 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02135,755,332 - 35,890,993 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mical2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494750,183,152 - 50,328,746 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365286,217,112 - 6,349,937 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365286,217,130 - 6,349,891 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICAL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl247,131,832 - 47,302,117 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1247,042,475 - 47,302,087 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2250,485,447 - 50,615,674 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MICAL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,481,610 - 52,723,442 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,571,224 - 52,723,371 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038150,081,637 - 150,325,042 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mical2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247664,167,433 - 4,300,641 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247664,167,480 - 4,300,528 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Mical2
1531 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:102
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000021858
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1117917486196963478Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
737974Bp161Blood pressure QTL 1610.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1164747558181133855Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1150452391168228760Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1123556856196963478Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
631548Bp88Blood pressure QTL 8850.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1156677124176484451Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat

Markers in Region
D1Rat430  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81175,846,982 - 175,847,083 (+)Marker Load Pipeline
mRatBN7.21166,412,396 - 166,412,497 (+)MAPPERmRatBN7.2
Rnor_6.01177,114,764 - 177,114,864NCBIRnor6.0
Rnor_5.01184,093,174 - 184,093,274UniSTSRnor5.0
RGSC_v3.41170,097,385 - 170,097,486RGDRGSC3.4
RGSC_v3.41170,097,386 - 170,097,486UniSTSRGSC3.4
Celera1164,289,657 - 164,289,757UniSTS
RGSC_v3.11170,217,320 - 170,217,420RGD
RH 3.4 Map11321.1RGD
RH 3.4 Map11321.1UniSTS
RH 2.0 Map1856.5RGD
SHRSP x BN Map183.5599RGD
FHH x ACI Map179.73RGD
Cytogenetic Map1q33UniSTS
RH143481  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21166,468,654 - 166,468,785 (+)MAPPERmRatBN7.2
Rnor_6.01177,170,669 - 177,170,799NCBIRnor6.0
Rnor_5.01184,149,079 - 184,149,209UniSTSRnor5.0
RGSC_v3.41170,153,870 - 170,154,000UniSTSRGSC3.4
Celera1164,344,057 - 164,344,187UniSTS
RH 3.4 Map11320.5UniSTS
Cytogenetic Map1q33UniSTS
RH140638  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21166,469,989 - 166,470,182 (+)MAPPERmRatBN7.2
Rnor_6.01177,172,004 - 177,172,196NCBIRnor6.0
Rnor_5.01184,150,414 - 184,150,606UniSTSRnor5.0
RGSC_v3.41170,155,205 - 170,155,397UniSTSRGSC3.4
Celera1164,345,392 - 164,345,584UniSTS
RH 3.4 Map11322.4UniSTS
Cytogenetic Map1q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001139508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_182669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001835449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY149342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021858   ⟹   ENSRNOP00000021858
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1166,345,869 - 166,468,864 (+)Ensembl
Rnor_6.0 Ensembl1177,093,387 - 177,170,266 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000043017   ⟹   ENSRNOP00000039759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1166,491,721 - 166,530,574 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081595   ⟹   ENSRNOP00000074877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,825,596 - 175,905,155 (+)Ensembl
mRatBN7.2 Ensembl1166,345,859 - 166,471,719 (+)Ensembl
Rnor_6.0 Ensembl1177,048,655 - 177,173,995 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085326   ⟹   ENSRNOP00000075121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1166,481,790 - 166,530,574 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102148   ⟹   ENSRNOP00000093313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1175,825,596 - 175,904,507 (+)Ensembl
mRatBN7.2 Ensembl1166,345,893 - 166,468,823 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105519   ⟹   ENSRNOP00000084342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1166,345,869 - 166,468,864 (+)Ensembl
RefSeq Acc Id: NM_001139508   ⟹   NP_001132980
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
mRatBN7.21166,345,857 - 166,471,715 (+)NCBI
Rnor_6.01177,093,387 - 177,170,266 (+)NCBI
Rnor_5.01184,027,383 - 184,152,139 (+)NCBI
RGSC_v3.41170,076,009 - 170,153,467 (+)RGD
Celera1164,268,361 - 164,343,654 (+)RGD
Sequence:
RefSeq Acc Id: NM_001395865   ⟹   NP_001382794
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,965,157 (+)NCBI
mRatBN7.21166,345,857 - 166,530,575 (+)NCBI
RefSeq Acc Id: NM_182669   ⟹   NP_872610
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,926,303 - 175,965,157 (+)NCBI
mRatBN7.21166,491,721 - 166,530,575 (+)NCBI
RefSeq Acc Id: XM_063269380   ⟹   XP_063125450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269383   ⟹   XP_063125453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269389   ⟹   XP_063125459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269392   ⟹   XP_063125462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269394   ⟹   XP_063125464
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,821,276 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269396   ⟹   XP_063125466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269399   ⟹   XP_063125469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269404   ⟹   XP_063125474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,441 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269411   ⟹   XP_063125481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,789,749 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269413   ⟹   XP_063125483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,441 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269416   ⟹   XP_063125486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,441 - 175,965,157 (+)NCBI
RefSeq Acc Id: XM_063269419   ⟹   XP_063125489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269420   ⟹   XP_063125490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269424   ⟹   XP_063125494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269429   ⟹   XP_063125499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269431   ⟹   XP_063125501
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269436   ⟹   XP_063125506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269441   ⟹   XP_063125511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269442   ⟹   XP_063125512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,821,873 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269445   ⟹   XP_063125515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269446   ⟹   XP_063125516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269450   ⟹   XP_063125520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,447 - 175,906,297 (+)NCBI
RefSeq Acc Id: XM_063269455   ⟹   XP_063125525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,442 - 175,965,157 (+)NCBI
RefSeq Acc Id: XR_010055211
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81175,780,446 - 175,906,297 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001132980 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382794 (Get FASTA)   NCBI Sequence Viewer  
  NP_872610 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125450 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125459 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125462 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125464 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125466 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125469 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125474 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125481 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125483 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125489 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125490 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125499 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125501 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125506 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125511 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125512 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125515 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125516 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125520 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125525 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98647 (Get FASTA)   NCBI Sequence Viewer  
  AAI00138 (Get FASTA)   NCBI Sequence Viewer  
  AAN46735 (Get FASTA)   NCBI Sequence Viewer  
  D4A1F2 (Get FASTA)   NCBI Sequence Viewer  
  EDM17815 (Get FASTA)   NCBI Sequence Viewer  
  EDM17816 (Get FASTA)   NCBI Sequence Viewer  
  EDM17817 (Get FASTA)   NCBI Sequence Viewer  
  EDM17818 (Get FASTA)   NCBI Sequence Viewer  
  EDM17819 (Get FASTA)   NCBI Sequence Viewer  
  EDM17820 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021858.2
  ENSRNOP00000039759
  ENSRNOP00000074877
  ENSRNOP00000074877.1
  ENSRNOP00000093313
RefSeq Acc Id: NP_001132980   ⟸   NM_001139508
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021858   ⟸   ENSRNOT00000021858
Ensembl Acc Id: ENSRNOP00000074877   ⟸   ENSRNOT00000081595
Ensembl Acc Id: ENSRNOP00000084342   ⟸   ENSRNOT00000105519
Ensembl Acc Id: ENSRNOP00000093313   ⟸   ENSRNOT00000102148
RefSeq Acc Id: NP_872610   ⟸   NM_182669
- Peptide Label: isoform 3
- UniProtKB: A6I864 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001382794   ⟸   NM_001395865
- Peptide Label: isoform 1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000039759   ⟸   ENSRNOT00000043017
Ensembl Acc Id: ENSRNOP00000075121   ⟸   ENSRNOT00000085326
RefSeq Acc Id: XP_063125474   ⟸   XM_063269404
- Peptide Label: isoform X4
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125483   ⟸   XM_063269413
- Peptide Label: isoform X6
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125486   ⟸   XM_063269416
- Peptide Label: isoform X7
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125450   ⟸   XM_063269380
- Peptide Label: isoform X1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125466   ⟸   XM_063269396
- Peptide Label: isoform X2
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125469   ⟸   XM_063269399
- Peptide Label: isoform X3
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125525   ⟸   XM_063269455
- Peptide Label: isoform X15
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125453   ⟸   XM_063269383
- Peptide Label: isoform X1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125459   ⟸   XM_063269389
- Peptide Label: isoform X1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125462   ⟸   XM_063269392
- Peptide Label: isoform X1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125490   ⟸   XM_063269420
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125489   ⟸   XM_063269419
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125501   ⟸   XM_063269431
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125516   ⟸   XM_063269446
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063125511   ⟸   XM_063269441
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125494   ⟸   XM_063269424
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125506   ⟸   XM_063269436
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AIG9 (UniProtKB/TrEMBL),   A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125515   ⟸   XM_063269445
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125499   ⟸   XM_063269429
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063125520   ⟸   XM_063269450
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063125481   ⟸   XM_063269411
- Peptide Label: isoform X5
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125464   ⟸   XM_063269394
- Peptide Label: isoform X1
- UniProtKB: Q80WN5 (UniProtKB/Swiss-Prot),   Q4G091 (UniProtKB/Swiss-Prot),   Q498N8 (UniProtKB/Swiss-Prot),   F1LW55 (UniProtKB/Swiss-Prot),   D4A1F2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063125512   ⟸   XM_063269442
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZXM8 (UniProtKB/TrEMBL),   A6I861 (UniProtKB/TrEMBL)
Protein Domains
bMERB   Calponin-homology (CH)   LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4G091-F1-model_v2 AlphaFold Q4G091 1-687 view protein structure
AF-D4A1F2-F1-model_v2 AlphaFold D4A1F2 1-1948 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690326
Promoter ID:EPDNEW_R845
Type:multiple initiation site
Name:Mical2_1
Description:microtubule associated monooxygenase, calponin and LIM domaincontaining 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01177,048,641 - 177,048,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311773 AgrOrtholog
BioCyc Gene G2FUF-57793 BioCyc
Ensembl Genes ENSRNOG00000016210 Ensembl, ENTREZGENE
  ENSRNOG00000016244 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000079050 ENTREZGENE
Ensembl Transcript ENSRNOT00000021858.3 UniProtKB/Swiss-Prot
  ENSRNOT00000043017 ENTREZGENE
  ENSRNOT00000081595 ENTREZGENE
  ENSRNOT00000081595.2 UniProtKB/Swiss-Prot
  ENSRNOT00000102148 ENTREZGENE
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  3.50.50.60 UniProtKB/Swiss-Prot
  Cysteine Rich Protein UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7112444 IMAGE-MGC_LOAD
  IMAGE:7457561 IMAGE-MGC_LOAD
InterPro bMERB_dom UniProtKB/Swiss-Prot
  CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  F-actin_Monoox_Mical UniProtKB/Swiss-Prot
  FAD-bd UniProtKB/Swiss-Prot
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot
  Znf_LIM UniProtKB/Swiss-Prot
KEGG Report rno:365352 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112586 IMAGE-MGC_LOAD
  MGC:114239 IMAGE-MGC_LOAD
NCBI Gene 365352 ENTREZGENE
PANTHER CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED UniProtKB/Swiss-Prot
  PTHR23167:SF39 UniProtKB/Swiss-Prot
Pfam DUF3585 UniProtKB/Swiss-Prot
  FAD_binding_3 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
  Rossman_Mical UniProtKB/Swiss-Prot
PhenoGen Mical2 PhenoGen
PRINTS RNGMNOXGNASE UniProtKB/Swiss-Prot
PROSITE BMERB UniProtKB/Swiss-Prot
  LIM_DOMAIN_1 UniProtKB/Swiss-Prot
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016210 RatGTEx
  ENSRNOG00000016244 RatGTEx
  ENSRNOG00000079050 RatGTEx
SMART DUF3585 UniProtKB/Swiss-Prot
  LIM UniProtKB/Swiss-Prot
  SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
  SSF51905 UniProtKB/Swiss-Prot
UniProt A0A0G2K9T6_RAT UniProtKB/TrEMBL
  A0A8I5ZXM8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIG9 ENTREZGENE, UniProtKB/TrEMBL
  A6I861 ENTREZGENE, UniProtKB/TrEMBL
  A6I864 ENTREZGENE, UniProtKB/TrEMBL
  D4A1F2 ENTREZGENE
  F1LW55 ENTREZGENE
  MICA2_RAT UniProtKB/Swiss-Prot
  Q498N8 ENTREZGENE
  Q4G091 ENTREZGENE
  Q80WN5 ENTREZGENE
UniProt Secondary F1LW55 UniProtKB/Swiss-Prot
  Q498N8 UniProtKB/Swiss-Prot
  Q4G091 UniProtKB/Swiss-Prot
  Q80WN5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-14 Mical2  microtubule associated monooxygenase, calponin and LIM domain containing 2  Micalcl  MICAL C-terminal like  Data merged from RGD:735042 737654 PROVISIONAL
2013-04-04 Mical2  microtubule associated monooxygenase, calponin and LIM domain containing 2  Mical2  microtubule associated monoxygenase, calponin and LIM domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mical2  microtubule associated monoxygenase, calponin and LIM domain containing 2   Mical2_predicted  microtubule associated monoxygenase, calponin and LIM domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-07 Micalcl  MICAL C-terminal like  RSB-11-77  RSB-11-77 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Mical2_predicted  microtubule associated monoxygenase, calponin and LIM domain containing 2 (predicted)  RGD1311773_predicted  similar to flavoprotein oxidoreductase MICAL2 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-09-30 RSB-11-77        Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1311773_predicted  similar to flavoprotein oxidoreductase MICAL2 (predicted)  LOC365352_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC365352_predicted  similar to flavoprotein oxidoreductase MICAL2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL