Psma8 (proteasome 20S subunit alpha 8) - Rat Genome Database

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Gene: Psma8 (proteasome 20S subunit alpha 8) Rattus norvegicus
Analyze
Symbol: Psma8
Name: proteasome 20S subunit alpha 8
RGD ID: 1311659
Description: Predicted to be involved in meiotic cell cycle; proteasomal protein catabolic process; and regulation of meiosis I. Predicted to be located in cytoplasm. Predicted to be part of proteasome core complex, alpha-subunit complex and spermatoproteasome complex. Predicted to be active in nucleus. Orthologous to human PSMA8 (proteasome 20S subunit alpha 8); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC364814; LOC364814; proteasome (prosome, macropain) subunit, alpha type, 8; proteasome alpha 8 subunit-like; proteasome subunit alpha 8; proteasome subunit alpha type-7-like; proteasome subunit alpha-type 8; RGD1311659; similar to Proteasome subunit alpha type 7-like; uncharacterized protein LOC364814
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2185,863,594 - 5,928,226 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl185,863,608 - 5,928,226 (+)Ensembl
Rnor_6.0186,114,757 - 6,182,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,114,701 - 6,182,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,079,006 - 6,144,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,042,097 - 6,047,010 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1185,963,896 - 6,016,645 (+)NCBI
Celera185,893,308 - 5,957,752 (+)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21630459   PMID:23533145   PMID:23706739   PMID:31358751   PMID:31437213  


Genomics

Comparative Map Data
Psma8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2185,863,594 - 5,928,226 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl185,863,608 - 5,928,226 (+)Ensembl
Rnor_6.0186,114,757 - 6,182,393 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl186,114,701 - 6,182,535 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0186,079,006 - 6,144,199 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4186,042,097 - 6,047,010 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1185,963,896 - 6,016,645 (+)NCBI
Celera185,893,308 - 5,957,752 (+)NCBICelera
Cytogenetic Map18p13NCBI
PSMA8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381826,133,869 - 26,193,355 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1826,133,852 - 26,193,355 (+)EnsemblGRCh38hg38GRCh38
GRCh371823,713,833 - 23,773,319 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361821,967,814 - 22,027,317 (+)NCBINCBI36hg18NCBI36
Build 341821,967,838 - 22,027,318NCBI
Celera1820,528,304 - 20,584,262 (+)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1820,571,213 - 20,624,030 (+)NCBIHuRef
CHM1_11823,641,123 - 23,700,627 (+)NCBICHM1_1
T2T-CHM13v2.01826,328,519 - 26,387,998 (+)NCBI
Psma8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391814,839,192 - 14,895,358 (+)NCBIGRCm39mm39
GRCm39 Ensembl1814,839,208 - 14,895,358 (+)Ensembl
GRCm381814,706,135 - 14,762,301 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1814,706,151 - 14,762,301 (+)EnsemblGRCm38mm10GRCm38
MGSCv371814,864,660 - 14,920,808 (+)NCBIGRCm37mm9NCBIm37
MGSCv361814,849,169 - 14,905,863 (+)NCBImm8
Celera1814,934,136 - 14,984,486 (+)NCBICelera
Cytogenetic Map18A1NCBI
Psma8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540214,230,204 - 14,278,508 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540214,230,119 - 14,278,987 (+)NCBIChiLan1.0ChiLan1.0
PSMA8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11823,001,111 - 23,056,424 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1823,000,562 - 23,057,399 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01819,391,216 - 19,447,259 (+)NCBIMhudiblu_PPA_v0panPan3
PSMA8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1762,432,477 - 62,472,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl762,432,949 - 62,472,879 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha761,866,416 - 61,906,879 (-)NCBI
ROS_Cfam_1.0762,482,417 - 62,522,871 (-)NCBI
ROS_Cfam_1.0 Ensembl762,482,889 - 62,603,858 (-)Ensembl
UMICH_Zoey_3.1762,154,155 - 62,194,668 (-)NCBI
UNSW_CanFamBas_1.0762,167,303 - 62,207,856 (-)NCBI
UU_Cfam_GSD_1.0762,470,446 - 62,510,942 (-)NCBI
Psma8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494458,456,547 - 58,510,336 (-)NCBI
SpeTri2.0NW_0049365505,305,851 - 5,358,717 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMA8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6110,799,283 - 110,837,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16110,799,065 - 110,836,937 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26103,752,064 - 103,799,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMA8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11854,384,955 - 54,441,692 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1854,385,855 - 54,440,912 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605029,120,385 - 29,176,774 (-)NCBIVero_WHO_p1.0
Psma8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247706,185,767 - 6,236,505 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247706,183,774 - 6,235,885 (-)NCBIHetGla_female_1.0hetGla2


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:72
Interacting mature miRNAs:85
Transcripts:ENSRNOT00000044541
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 2 10 27 11 19 11 8 9 37 14 26 10 8
Below cutoff 1 33 30 30 30 2 37 21 8 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000044541   ⟹   ENSRNOP00000042447
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,863,646 - 5,928,226 (+)Ensembl
Rnor_6.0 Ensembl186,114,701 - 6,182,535 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116215   ⟹   ENSRNOP00000085667
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,863,608 - 5,928,226 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117101   ⟹   ENSRNOP00000097082
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl185,863,646 - 5,928,226 (+)Ensembl
RefSeq Acc Id: NM_001108884   ⟹   NP_001102354
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,863,646 - 5,928,226 (+)NCBI
Rnor_6.0186,114,757 - 6,182,393 (+)NCBI
Rnor_5.0186,079,006 - 6,144,199 (+)NCBI
RGSC_v3.4186,042,097 - 6,047,010 (-)RGD
Celera185,893,308 - 5,957,752 (+)RGD
Sequence:
RefSeq Acc Id: XR_005496064
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,863,594 - 5,923,420 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102354 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75033 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001102354   ⟸   NM_001108884
- UniProtKB: F1M6I7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000042447   ⟸   ENSRNOT00000044541
RefSeq Acc Id: ENSRNOP00000085667   ⟸   ENSRNOT00000116215
RefSeq Acc Id: ENSRNOP00000097082   ⟸   ENSRNOT00000117101
Protein Domains
PROTEASOME_ALPHA_1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M6I7-F1-model_v2 AlphaFold F1M6I7 1-250 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700645
Promoter ID:EPDNEW_R11169
Type:multiple initiation site
Name:Psma8_1
Description:proteasome subunit alpha 8
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0186,114,764 - 6,114,824EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311659 AgrOrtholog
BioCyc Gene G2FUF-8301 BioCyc
Ensembl Genes ENSRNOG00000030363 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042447 ENTREZGENE
  ENSRNOP00000042447.4 UniProtKB/TrEMBL
  ENSRNOP00000085667.1 UniProtKB/TrEMBL
  ENSRNOP00000097082.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044541 ENTREZGENE
  ENSRNOT00000044541.6 UniProtKB/TrEMBL
  ENSRNOT00000116215.1 UniProtKB/TrEMBL
  ENSRNOT00000117101.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.20.10 UniProtKB/TrEMBL
InterPro Ntn_hydrolases_N UniProtKB/TrEMBL
  Proteasome_asu_N UniProtKB/TrEMBL
  Proteasome_suA-type UniProtKB/TrEMBL
  Proteasome_sua/b UniProtKB/TrEMBL
KEGG Report rno:364814 UniProtKB/TrEMBL
NCBI Gene 364814 ENTREZGENE
Pfam Proteasome UniProtKB/TrEMBL
  Proteasome_A_N UniProtKB/TrEMBL
PhenoGen Psma8 PhenoGen
PROSITE PROTEASOME_A_1 UniProtKB/TrEMBL
  PROTEASOME_A_2 UniProtKB/TrEMBL
SMART Proteasome_A_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56235 UniProtKB/TrEMBL
UniProt A0A8I6AS04_RAT UniProtKB/TrEMBL
  A0A8I6GE49_RAT UniProtKB/TrEMBL
  F1M6I7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 Psma8  proteasome 20S subunit alpha 8  Psma8  proteasome subunit alpha 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-08-19 Psma8  proteasome subunit alpha 8  Psma8  proteasome (prosome, macropain) subunit, alpha type, 8  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Psma8  proteasome (prosome, macropain) subunit, alpha type, 8  LOC680840  similar to Proteasome subunit alpha type 7-like  Data Merged 1643240 APPROVED
2013-05-24 Psma8  proteasome (prosome, macropain) subunit, alpha type, 8  LOC100363246  proteasome alpha 8 subunit-like  Data Merged 1643240 APPROVED
2012-10-10 Psma8  proteasome (prosome, macropain) subunit, alpha type, 8  RGD1311659  similar to Proteasome subunit alpha type 7-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100363246  proteasome alpha 8 subunit-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1311659  similar to Proteasome subunit alpha type 7-like   RGD1311659_predicted  similar to Proteasome subunit alpha type 7-like (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC680840  similar to Proteasome subunit alpha type 7-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1311659_predicted  similar to Proteasome subunit alpha type 7-like (predicted)  LOC364814_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC364814_predicted  similar to Proteasome subunit alpha type 7-like (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL