Zmiz1 (zinc finger, MIZ-type containing 1) - Rat Genome Database

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Gene: Zmiz1 (zinc finger, MIZ-type containing 1) Rattus norvegicus
Analyze
Symbol: Zmiz1
Name: zinc finger, MIZ-type containing 1
RGD ID: 1311620
Description: Predicted to enable SMAD binding activity; SUMO ligase activity; and nuclear receptor coactivator activity. Predicted to be involved in several processes, including cell surface receptor protein serine/threonine kinase signaling pathway; positive regulation of Notch signaling pathway; and pyramidal neuron migration to cerebral cortex. Predicted to act upstream of or within several processes, including circulatory system development; positive regulation of fibroblast proliferation; and vitellogenesis. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of chromatin. Orthologous to human ZMIZ1 (zinc finger MIZ-type containing 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102553140; LOC361103; Rai17; retinoic acid induced 17; uncharacterized LOC102553140; uncharacterized protein LOC102553140; zinc finger MIZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,033,983 - 1,239,425 (+)NCBIGRCr8
mRatBN7.2161,027,083 - 1,232,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,033,643 - 1,238,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,179,510 - 2,384,782 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,040,338 - 1,245,537 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0161,749,191 - 1,954,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,726,702 - 1,932,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,037,882 - 1,245,259 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,149,337 - 1,241,515 (+)NCBI
Celera161,006,205 - 1,210,417 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
pyrimidifen  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
versicolorin A  (ISO)
vorinostat  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14609956   PMID:15572682   PMID:16777850   PMID:17967885   PMID:22082260   PMID:26522984   PMID:30639322  


Genomics

Comparative Map Data
Zmiz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,033,983 - 1,239,425 (+)NCBIGRCr8
mRatBN7.2161,027,083 - 1,232,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,033,643 - 1,238,925 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,179,510 - 2,384,782 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,040,338 - 1,245,537 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0161,749,191 - 1,954,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,726,702 - 1,932,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,037,882 - 1,245,259 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,149,337 - 1,241,515 (+)NCBI
Celera161,006,205 - 1,210,417 (+)NCBICelera
Cytogenetic Map16p16NCBI
ZMIZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381079,068,966 - 79,316,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1079,068,966 - 79,316,519 (+)EnsemblGRCh38hg38GRCh38
GRCh371080,828,723 - 81,076,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361080,631,347 - 80,746,279 (+)NCBINCBI36Build 36hg18NCBI36
Build 341080,591,875 - 80,746,279NCBI
Celera1074,115,464 - 74,363,006 (+)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1074,824,464 - 75,071,974 (+)NCBIHuRef
CHM1_11081,112,306 - 81,359,830 (+)NCBICHM1_1
T2T-CHM13v2.01079,938,246 - 80,185,863 (+)NCBIT2T-CHM13v2.0
Zmiz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,458,299 - 25,667,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,459,609 - 25,667,167 (+)EnsemblGRCm39 Ensembl
GRCm381425,457,875 - 25,666,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,459,185 - 25,666,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371426,278,778 - 26,484,205 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361424,292,476 - 24,497,903 (+)NCBIMGSCv36mm8
Celera1421,781,141 - 21,988,873 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1415.03NCBI
Zmiz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,337,825 - 13,494,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,338,077 - 13,534,283 (-)NCBIChiLan1.0ChiLan1.0
ZMIZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2891,209,993 - 91,458,016 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11091,215,349 - 91,463,340 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01075,581,794 - 75,829,748 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11078,294,867 - 78,492,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,294,867 - 78,492,475 (+)Ensemblpanpan1.1panPan2
ZMIZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1428,807,368 - 29,035,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl428,854,908 - 29,045,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha428,932,137 - 29,163,079 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,108,747 - 29,340,059 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,156,127 - 29,339,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1428,979,966 - 29,210,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,182,352 - 29,413,143 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0429,535,577 - 29,766,873 (+)NCBIUU_Cfam_GSD_1.0
Zmiz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,952,014 - 52,171,581 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936521444,598 - 581,800 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936521444,599 - 664,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMIZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,455,127 - 81,647,939 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11481,409,067 - 81,647,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,066,226 - 88,307,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMIZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1952,150,810 - 52,414,793 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl952,148,075 - 52,259,728 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604812,499,845 - 12,741,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmiz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,145,570 - 12,299,318 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475412,106,828 - 12,299,188 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zmiz1
949 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:676
Count of miRNA genes:280
Interacting mature miRNAs:373
Transcripts:ENSRNOT00000014004
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat

Markers in Region
AI180202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,226,347 - 1,226,504 (+)MAPPERmRatBN7.2
Rnor_6.0161,948,369 - 1,948,525NCBIRnor6.0
Rnor_5.0161,925,954 - 1,926,110UniSTSRnor5.0
RGSC_v3.4161,238,991 - 1,239,147UniSTSRGSC3.4
Celera161,204,149 - 1,204,305UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH127616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,232,156 - 1,232,341 (+)MAPPERmRatBN7.2
Rnor_6.0161,954,174 - 1,954,358NCBIRnor6.0
Rnor_5.0161,931,759 - 1,931,943UniSTSRnor5.0
RGSC_v3.4161,244,800 - 1,244,984UniSTSRGSC3.4
Celera161,209,958 - 1,210,142UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH131985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,141,986 - 1,142,206 (+)MAPPERmRatBN7.2
Rnor_6.0161,863,835 - 1,864,054NCBIRnor6.0
Rnor_5.0161,841,420 - 1,841,639UniSTSRnor5.0
RGSC_v3.4161,153,759 - 1,153,978UniSTSRGSC3.4
Celera161,119,852 - 1,120,071UniSTS
Cytogenetic Map16p16UniSTS
RH132029  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,030,324 - 1,030,531 (+)MAPPERmRatBN7.2
Rnor_6.0161,752,189 - 1,752,395NCBIRnor6.0
Rnor_5.0161,729,704 - 1,729,910UniSTSRnor5.0
RGSC_v3.4161,040,880 - 1,041,086UniSTSRGSC3.4
Celera161,009,203 - 1,009,409UniSTS
RH 3.4 Map164.1UniSTS
Cytogenetic Map16p16UniSTS
RH143398  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,230,478 - 1,230,583 (+)MAPPERmRatBN7.2
Rnor_6.0161,952,496 - 1,952,600NCBIRnor6.0
Rnor_5.0161,930,081 - 1,930,185UniSTSRnor5.0
RGSC_v3.4161,243,122 - 1,243,226UniSTSRGSC3.4
Celera161,208,280 - 1,208,384UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
AU047803  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,049,708 - 1,049,886 (+)MAPPERmRatBN7.2
Rnor_6.0161,771,539 - 1,771,716NCBIRnor6.0
Rnor_5.0161,749,056 - 1,749,233UniSTSRnor5.0
RGSC_v3.4161,060,245 - 1,060,422UniSTSRGSC3.4
Celera161,028,585 - 1,028,762UniSTS
Cytogenetic Map16p16UniSTS
AA859156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,232,147 - 1,232,342 (+)MAPPERmRatBN7.2
Rnor_6.0161,954,165 - 1,954,359NCBIRnor6.0
Rnor_5.0161,931,750 - 1,931,944UniSTSRnor5.0
RGSC_v3.4161,244,791 - 1,244,985UniSTSRGSC3.4
Celera161,209,949 - 1,210,143UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
AU049190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,125,998 - 1,126,237 (+)MAPPERmRatBN7.2
Rnor_6.0161,847,950 - 1,848,188NCBIRnor6.0
Rnor_5.0161,825,535 - 1,825,773UniSTSRnor5.0
RGSC_v3.4161,137,772 - 1,138,010UniSTSRGSC3.4
Celera161,103,896 - 1,104,102UniSTS
Cytogenetic Map16p16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 25 9 18 9 1 66 32 34 11
Low 9 32 32 1 32 8 10 8 3 7 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000014004   ⟹   ENSRNOP00000014003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)Ensembl
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101223   ⟹   ENSRNOP00000082013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,027,325 - 1,232,475 (+)Ensembl
RefSeq Acc Id: NM_001108393   ⟹   NP_001101863
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,034,160 - 1,239,425 (+)NCBI
mRatBN7.2161,027,325 - 1,232,616 (+)NCBI
Rnor_6.0161,749,191 - 1,954,633 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
RGSC_v3.4161,037,882 - 1,245,259 (+)RGD
Celera161,006,205 - 1,210,417 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252538   ⟹   XP_006252600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,984 - 1,239,277 (+)NCBI
mRatBN7.2161,027,083 - 1,232,468 (+)NCBI
Rnor_6.0161,749,206 - 1,954,485 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252539   ⟹   XP_006252601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,984 - 1,239,277 (+)NCBI
mRatBN7.2161,027,084 - 1,232,468 (+)NCBI
Rnor_6.0161,749,206 - 1,954,485 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600163   ⟹   XP_017455652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,180,782 - 1,239,277 (+)NCBI
mRatBN7.2161,173,980 - 1,232,468 (+)NCBI
Rnor_6.0161,895,702 - 1,954,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094611   ⟹   XP_038950539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,180,445 - 1,239,277 (+)NCBI
mRatBN7.2161,173,641 - 1,232,468 (+)NCBI
RefSeq Acc Id: XM_039094612   ⟹   XP_038950540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,179,665 - 1,239,277 (+)NCBI
mRatBN7.2161,172,862 - 1,232,468 (+)NCBI
RefSeq Acc Id: XM_063275481   ⟹   XP_063131551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,037,788 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275482   ⟹   XP_063131552
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,984 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275483   ⟹   XP_063131553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,984 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275484   ⟹   XP_063131554
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,984 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275485   ⟹   XP_063131555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,040,320 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275487   ⟹   XP_063131557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,033,983 - 1,239,277 (+)NCBI
RefSeq Acc Id: XM_063275488   ⟹   XP_063131558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,054,817 - 1,239,277 (+)NCBI
RefSeq Acc Id: NP_001101863   ⟸   NM_001108393
- UniProtKB: D4AE97 (UniProtKB/TrEMBL),   A6KMH0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252601   ⟸   XM_006252539
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZU59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252600   ⟸   XM_006252538
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455652   ⟸   XM_017600163
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000014003   ⟸   ENSRNOT00000014004
RefSeq Acc Id: XP_038950540   ⟸   XM_039094612
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038950539   ⟸   XM_039094611
- Peptide Label: isoform X5
RefSeq Acc Id: ENSRNOP00000082013   ⟸   ENSRNOT00000101223
RefSeq Acc Id: XP_063131557   ⟸   XM_063275487
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063131552   ⟸   XM_063275482
- Peptide Label: isoform X1
- UniProtKB: A6KMH0 (UniProtKB/TrEMBL),   D4AE97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131554   ⟸   XM_063275484
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131553   ⟸   XM_063275483
- Peptide Label: isoform X1
- UniProtKB: A6KMH0 (UniProtKB/TrEMBL),   D4AE97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131551   ⟸   XM_063275481
- Peptide Label: isoform X1
- UniProtKB: A6KMH0 (UniProtKB/TrEMBL),   D4AE97 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131555   ⟸   XM_063275485
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063131558   ⟸   XM_063275488
- Peptide Label: isoform X4
Protein Domains
SP-RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE97-F1-model_v2 AlphaFold D4AE97 1-1072 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699890
Promoter ID:EPDNEW_R10414
Type:initiation region
Name:Zmiz1_1
Description:zinc finger, MIZ-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0161,749,218 - 1,749,278EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311620 AgrOrtholog
BioCyc Gene G2FUF-12278 BioCyc
Ensembl Genes ENSRNOG00000010488 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014004.8 UniProtKB/TrEMBL
  ENSRNOT00000101223.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Zmiz1_N UniProtKB/TrEMBL
  Znf_MIZ UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:361103 UniProtKB/TrEMBL
NCBI Gene 361103 ENTREZGENE
PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam zf-MIZ UniProtKB/TrEMBL
  Zmiz1_N UniProtKB/TrEMBL
PhenoGen Zmiz1 PhenoGen
PROSITE ZF_SP_RING UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010488 RatGTEx
UniProt A0A8I5ZU59 ENTREZGENE, UniProtKB/TrEMBL
  A6KMH0 ENTREZGENE, UniProtKB/TrEMBL
  D4AE97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zmiz1  zinc finger, MIZ-type containing 1  LOC102553140  uncharacterized LOC102553140  Data merged from RGD:7571795 737654 PROVISIONAL
2013-12-18 LOC102553140  uncharacterized LOC102553140      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Zmiz1  zinc finger, MIZ-type containing 1  Rai17_predicted  retinoic acid induced 17 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Rai17_predicted  retinoic acid induced 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED