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Gene: Cdc42ep4 (CDC42 effector protein 4) Rattus norvegicus

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Symbol:

Cdc42ep4

Name:

CDC42 effector protein 4

RGD ID:

1311567

Description:

Predicted to enable small GTPase binding activity. Predicted to be involved in Rho protein signal transduction; positive regulation of cellular component biogenesis; and regulation of cell shape. Predicted to act upstream of or within cellular response to type II interferon. Predicted to be located in adherens junction; cytoskeleton; and phagocytic vesicle. Predicted to be active in cytoplasm; cytoskeleton; and plasma membrane. Orthologous to human CDC42EP4 (CDC42 effector protein 4); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CDC42 effector protein (Rho GTPase binding) 4; LOC303653

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC42EP4 (CDC42 effector protein 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Cdc42ep4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdc42ep4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC42EP4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDC42EP4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc42ep4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDC42EP4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDC42EP4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc42ep4 (CDC42 effector protein 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	UTS2B (urotensin 2B)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CDC42EP4 (CDC42 effector protein 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdc42ep4 (CDC42 effector protein 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdc42ep4a (CDC42 effector protein (Rho GTPase binding) 4a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdc42ep4b (CDC42 effector protein (Rho GTPase binding) 4b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cdc42ep4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	XB5748694 [provisional:cdc42ep4]	Alliance	DIOPT (Hieranoid\|InParanoid\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	99,271,750 - 99,298,551 (-)	NCBI		GRCr8
mRatBN7.2	10	98,772,613 - 98,797,924 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,772,495 - 98,797,695 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	103,830,115 - 103,854,700 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	103,293,171 - 103,317,759 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	98,692,638 - 98,717,232 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	102,244,680 - 102,269,272 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	102,244,681 - 102,269,272 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	103,365,895 - 103,390,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	103,380,264 - 103,405,048 (-)	NCBI
Celera	10	97,379,485 - 97,404,067 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-amino-2,6-dinitrotoluene (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

dioxygen (ISO)

diuron (EXP)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

furan (EXP)

gentamycin (EXP)

glyphosate (EXP)

hexadecanoic acid (ISO)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

isoprenaline (ISO)

leflunomide (ISO)

levofloxacin (EXP)

lipopolysaccharide (ISO)

menadione (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

potassium cyanide (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

selenium atom (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tert-butyl hydroperoxide (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

troglitazone (ISO)

trovafloxacin (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vincristine (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (ISO)

positive regulation of actin filament polymerization (IBA)

positive regulation of pseudopodium assembly (IBA,ISO)

regulation of cell shape (IBA,ISO)

Rho protein signal transduction (IBA,ISO)

Cellular Component

actin cytoskeleton (IEA,ISO)

adherens junction (ISO)

cytoplasm (IBA,ISO)

cytoskeleton (IBA)

endomembrane system (IEA)

microtubule cytoskeleton (IEA,ISO)

phagocytic vesicle (ISO)

plasma membrane (IBA,ISO)

Molecular Function

protein binding (ISO)

small GTPase binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10490598	PMID:11035016	PMID:12477932	PMID:19144319	PMID:22658674	PMID:25468996

Genomics

Comparative Map Data

Cdc42ep4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	99,271,750 - 99,298,551 (-)	NCBI		GRCr8
mRatBN7.2	10	98,772,613 - 98,797,924 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	98,772,495 - 98,797,695 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	103,830,115 - 103,854,700 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	103,293,171 - 103,317,759 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	98,692,638 - 98,717,232 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	102,244,680 - 102,269,272 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	102,244,681 - 102,269,272 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	103,365,895 - 103,390,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	103,380,264 - 103,405,048 (-)	NCBI
Celera	10	97,379,485 - 97,404,067 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

CDC42EP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	73,283,624 - 73,312,001 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	73,283,624 - 73,312,005 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	71,279,763 - 71,308,140 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	68,791,358 - 68,819,738 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	68,791,358 - 68,819,738	NCBI
Celera	17	67,862,911 - 67,891,275 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	66,689,114 - 66,717,308 (-)	NCBI		HuRef
CHM1_1	17	71,343,840 - 71,373,048 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	74,173,348 - 74,201,822 (-)	NCBI		T2T-CHM13v2.0

Cdc42ep4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	113,617,676 - 113,643,369 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	113,617,676 - 113,642,707 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	113,726,850 - 113,752,543 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	113,726,850 - 113,751,881 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	113,588,164 - 113,613,129 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	113,542,940 - 113,567,408 (-)	NCBI		MGSCv36	mm8
Celera	11	125,491,736 - 125,518,895 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	79.22	NCBI

Cdc42ep4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	313,376 - 314,422 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955553	311,725 - 335,125 (-)	NCBI	ChiLan1.0	ChiLan1.0

CDC42EP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	89,301,929 - 89,329,228 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	94,126,841 - 94,154,118 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	67,212,571 - 67,239,844 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	72,666,941 - 72,797,808 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

CDC42EP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	6,888,183 - 6,909,986 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	6,907,205 - 6,964,626 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	7,507,773 - 7,529,595 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	7,559,010 - 7,580,823 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	7,578,145 - 7,579,175 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	7,599,505 - 7,621,303 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	7,702,392 - 7,724,167 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	7,763,144 - 7,784,960 (+)	NCBI		UU_Cfam_GSD_1.0

Cdc42ep4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	7,445,938 - 7,465,090 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	961,017 - 962,084 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	943,754 - 963,018 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC42EP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	7,638,085 - 7,660,186 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	7,637,797 - 7,660,189 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	7,918,360 - 7,940,485 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC42EP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	48,331,092 - 48,358,301 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	48,355,463 - 48,356,533 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	19,151,097 - 19,179,345 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdc42ep4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	3,372,778 - 3,394,855 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdc42ep4
252 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	286
Count of miRNA genes:	174
Interacting mature miRNAs:	217
Transcripts:	ENSRNOT00000048264
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	92238497	101012337	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	64890616	107211142	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631539	Oia6	Oil induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	97010147	104670812	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91228102	104060283	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat

Markers in Region

RH130010

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,772,692 - 98,772,891 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,244,760 - 102,244,958	NCBI	Rnor6.0
Rnor_5.0	10	101,923,556 - 101,923,754	UniSTS	Rnor5.0
RGSC_v3.4	10	103,365,975 - 103,366,173	UniSTS	RGSC3.4
RGSC_v3.4	10	103,356,539 - 103,356,737	UniSTS	RGSC3.4
Celera	10	97,379,565 - 97,379,763	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

RH137152

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	98,772,744 - 98,772,933 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	102,244,812 - 102,245,000	NCBI	Rnor6.0
Rnor_5.0	10	101,923,608 - 101,923,796	UniSTS	Rnor5.0
RGSC_v3.4	10	103,366,027 - 103,366,215	UniSTS	RGSC3.4
RGSC_v3.4	10	103,356,591 - 103,356,779	UniSTS	RGSC3.4
Celera	10	97,379,617 - 97,379,805	UniSTS
RH 3.4 Map	10	1126.6	UniSTS
Cytogenetic Map	10	q32.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC161986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048264 ⟹ ENSRNOP00000045828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,772,614 - 98,797,695 (-)	Ensembl
Rnor_6.0 Ensembl	10	102,244,681 - 102,269,272 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096566 ⟹ ENSRNOP00000078041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,772,614 - 98,797,235 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097816 ⟹ ENSRNOP00000077095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,772,614 - 98,775,782 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110444 ⟹ ENSRNOP00000090992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	98,772,495 - 98,796,769 (-)	Ensembl

RefSeq Acc Id:

NM_001107063 ⟹ NP_001100533

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,296,342 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,797,208 (-)	NCBI
Rnor_6.0	10	102,244,680 - 102,269,272 (-)	NCBI
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI
RGSC_v3.4	10	103,365,895 - 103,390,663 (-)	RGD
Celera	10	97,379,485 - 97,404,067 (-)	RGD

Sequence:

show sequence

CGCTGCCATGGGTCGCCAGCCTTGCCGAGGCGCCAAGCACACTGAGGGGAGCACACAGCCGCAC
CTGGTCCGTGCTCGGGGAGCTGGGGGCCGAGCCCTCTGATTGCCCTGTCTACCCTTTGCACTTG
CTGGACTTGAGATCTGACCCCACACCTGCCTGTTGCCTTGGGAGTGCCCAGCTCCCCCCACAGC
CAGCAAGATGCCCATTCTCAAACAGCTGGTGTCCGGCTCTGTGAACTCAAAGCGACGCTCACGC
GCGGACCTCACAGCGGAGATGATCAGTGCCCCACTGGGTGACTTCCGCCACACCATGCATGTGG
GCCGGGGTGGGGATGCCTTTGGGGACACCTCCTTCCTCACTAGCAAGACGGGCGAACCTGATGG
CGAGTCCTTGGATGAACAGGCCACATCGTCCAAACTCAGCCTCCTGTCCCGGAAGTTCCGGGGC
AGTAAACGTTCACAGTCTGTGACCAGAGGGGACCGGGAGCAGAGAGACATGCTGGGCTCCCTGC
GGGACTCATCACTGTTTGTCAAGAATGCCATGTCCCTGCCTCAGCTCAATGAGAAGGAAGCCAC
TGAGAAGGACTCCAGCAAGTTACCCAAGAGCTTGTCATCCAGCCCTGTGAAGAAGGCAGATACG
AGAGATGGTAGCCCAAAGAGTCCCCATCGGAACGGGGCCACAGGGCCCCACTCACCTGACCCAC
TCCTTGATGAGCAGGCCTTTGGGGACCTGATGGACCTACCCGTCATGCCCAAAGTCAGCTACGG
CCTGAAGCATGCTGAGTCGATCCTGTCCTTCCACATTGACCTGGGGCCCTCCATGCTGGGAGAT
GTCCTCAGCATCATGGACAAGGACCAGTGGGGCTCGGAGGAGGAGGGAGAGGAGGAAGGCGGCA
TTTACCGTGTCAAAGAAGGCCCCGGTGGCATTGTCCAGGGGCCCCCTATGCTGGAGGCATCTCC
TCGAGGGAGGCAGGAAAGCAAGGCCAGCTGGGACCATGCCTCCATGCTGCCCCACCACGCTCTG
GAGGATGACGGTTGGGCAGCGGTCGCCCCCAGCCCCAGCTCAGCACGCAGCGTGGGCAGCCATA
CCACACGGGACAGCAGTTCCCTGTCCAGCTACACCTCAGGCGTCCTTGAGGAGCGCAGCCCAGC
TTTCAGAGGCCCAGACAGGGTGGGGGCTGCTCCCCCAAGGCAGCCAGACAAGGAATTCTCCTTC
ATGGATGAGGAAGAGGAAGACGAGATCCGAGTTTGAGGCTGGACAGAAAGTTGAAAGTAGCTTC
CACAGCTCTGGGCTGCATCTTTTCCCTGCTGCTGCTGCCTTCACTATGACCTTTGACCTTACTT
GTAGGTGCAGCTAAGCCTCATCGGAGTGGACCCTGGACCTCAGGGATTGGGATGCCCAGGGAGT
AGCATGAGTACTGGTGCCTGGCGGCCTGACTCTGACCTGTCCGTCCTTCCCGCACCAGCTTGGG
ACAGAGCCGAGTCTGCAGGAATCCATTCTCTTCCGGGCCCCTTGCTTCCAGCCTGGCCTCAGAT
GGATGCCAGATGTTGTGAGTTCCTGCTGCAATGGCAGAGCCCCAGGTGTGGCCTCATGGACACT
TGGTTCCCTTTTGTTCACCTCATGTCTGGTGCCTACCAGGGAGGTAATGCAGCAGGAGGCAGGG
GTGCCCACATATTCGGGCTCCTCCTTCCTCCACCCTTGCCTCCTTACTGGAAGCCTGGTGCTCT
TTGAGGTTCAGCTACAGCTGGGGGACAACTTCAACTATTACACTAAATGCAGCCTTTCCCAGGG
GCCAGGACAGGATGGGGCAGAGAAGGAACGCCCTGCTCCCAGCTTTTTGTGGTCTCAAGAAGGA
CCCCCCACCCCCCCTCAGCAACACTAGAAACAGGAAAGGGGCCAGCTTGGCCGGCCCGTGGGTG
TGTTTGTTCCTTGTTGCTATGTTTAAACCTGAATAGAGCACTGTCAGAATCCCCCACCAGAAGA
GCGACTGTCTTGGTGGCAGAGTGACTGTTATCTGACCTGAGTTGGGGTGTACAGGCCCTGCCCA
GTGTTTGTCCCTGAACCCCCCACCTCCATAGCTGTTAATGGCTGAATGAGGAAAGTTCTGGAAT
ATGATGCTTAAATAATGCATTATATCCCAGTGTGATGTGTGCTTTGGCTCGTTAGTGTCCTCTC
CTTGGGTTAAGGGCCAGGCTTAGCAAAAACACGAAACAAAACAGGACCATATTTGATTTGGATT
CCAGGGAAATGAACGTGGGTTTTTGTTTGTTTGGTTTTGGCTTTTTGAGGTACAGTCTCACTCT
GTAGCCCAAGCCAGCCTCAAGCTCCTGCAAGCCTCCCTTTCCCTAGGAGCTGGGGTTACAAGTG
TGCACCACAGTTCCTGGCTCTTTGTTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTAC
CCAGAACAAGGGTAGAGGCTGGGACCTGAGCCCTGGGGAGGTGGTAGCTCATTACTTTTCTGTG
CTGGGAGCAGGCTGACACACTCCCTGGTCAAGCATAGCCAGTGGGAATCTGGGGAGAGAGCAAG
CTAAATTACAAGCAGAGTCTGGCCAGATGATGACCAGCCATGGGTTGCTCTGCTTCCAGAGGCC
TCCTTCTGATCCTGAAATGCTCACTGGGCTCCTGACTGGTGCTCCTACGCAGGTAGGCACTGAC
AGAACTGCAGAGCTGTGTCTCTAGCCAGCAGCACACACACACCCCTCTCCTAAATCTACCTGGT
TGGTTCTAGACTCTAAACTTTGTATTTTTTTCCATGACATTGATAAAGCAGTAAGAAAATATTA
AAATTTCCTCCTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247688 ⟹ XP_006247750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,295,404 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,797,011 (-)	NCBI
Rnor_6.0	10	102,244,680 - 102,269,091 (-)	NCBI
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI

Sequence:

show sequence

TAACCGGGGATCGGGAGGACGAGGACCCTAGAGCAGGGCGCACACACACATACACCTCTCTGGA
CCCAGCGTAGGTAGACTGGGACCAGACCCAGAGCCACATACCGTGTCCCAGAAAATCGTTTGCG
GAGGAGGGGGTAACAACAGGGCTCAGGGGGTAACAACAGGGCTCAGCGTCGCCAGGACTCCCGG
ATCTGGCCACGAGAGCTGCTCGGGGTGGGGTGAGTGGGCAGGTTTTAAAGGTCCACCCCCTCGC
GCAGGAATGGGGTGTGTTGCCGTGGGCAGGCACACAATCGTCTCGGCGGTCGCCCCGAGGGGGG
CGTGTGCGCACAGACTTCTCCGTGAACAACAGCTGAGTTCGTCTGTAGTGGCAAAGGGGTGTAC
GCGTGCTCTCCCGCTCGTACACACACTGCAGTAGGCGCGCGCCACCCGGTGTCGCCCGGCCCGG
GAGAAAGGAGGGCAGGAGCCGGCTGGAAGGCAATCGCCTAACGAGCAAATACTCCCCGCCCGCC
CGAGCCCTTCCCTCTCCCGCCCCGCCCGCCTCCCTCGGAAGACTTGGAGGCCAAGGCCGCAAGA
GGCGCAGGCTCTTGTCGGCCGGGGTGGGGCTGGGCCGAGCTGGCTGTCCCTTTGAAACCTGGTA
CGAGGCTTTACGCTGGGCGACCTGCGCCCGCGCCCGGTACGCCCGGAGCGTGGTGCTCGAGGCT
TGTTCAGGGGCGAGTAGGTAGCGGTTGGTTAATGATTTAACCGCTCGCTTGGGACGTTGAAGCT
GAGATCCTGGTCTCTGGCTCCTCCCCATTCCTGGAGCGCCCCCAGCCGGAGGAACAGATCTGCC
CTTCTGTGTCTGTGGCGTCGCCTGTTGGAGCTGCCTCTGCCCGTTGGGGTCTCCTGGTTGCTGT
GGCCCTCTGATTGCCCTGTCTACCCTTTGCACTTGCTGGACTTGAGATCTGACCCCACACCTGC
CTGTTGCCTTGGGAGTGCCCAGCTCCCCCCACAGCCAGCAAGATGCCCATTCTCAAACAGCTGG
TGTCCGGCTCTGTGAACTCAAAGCGACGCTCACGCGCGGACCTCACAGCGGAGATGATCAGTGC
CCCACTGGGTGACTTCCGCCACACCATGCATGTGGGCCGGGGTGGGGATGCCTTTGGGGACACC
TCCTTCCTCACTAGCAAGACGGGCGAACCTGATGGCGAGTCCTTGGATGAACAGGCCACATCGT
CCAAACTCAGCCTCCTGTCCCGGAAGTTCCGGGGCAGTAAACGTTCACAGTCTGTGACCAGAGG
GGACCGGGAGCAGAGAGACATGCTGGGCTCCCTGCGGGACTCATCACTGTTTGTCAAGAATGCC
ATGTCCCTGCCTCAGCTCAATGAGAAGGAAGCCACTGAGAAGGACTCCAGCAAGTTACCCAAGA
GCTTGTCATCCAGCCCTGTGAAGAAGGCAGATACGAGAGATGGTAGCCCAAAGAGTCCCCATCG
GAACGGGGCCACAGGGCCCCACTCACCTGACCCACTCCTTGATGAGCAGGCCTTTGGGGACCTG
ATGGACCTACCCGTCATGCCCAAAGTCAGCTACGGCCTGAAGCATGCTGAGTCGATCCTGTCCT
TCCACATTGACCTGGGGCCCTCCATGCTGGGAGATGTCCTCAGCATCATGGACAAGGACCAGTG
GGGCTCGGAGGAGGAGGGAGAGGAGGAAGGCGGCATTTACCGTGTCAAAGAAGGCCCCGGTGGC
ATTGTCCAGGGGCCCCCTATGCTGGAGGCATCTCCTCGAGGGAGGCAGGAAAGCAAGGCCAGCT
GGGACCATGCCTCCATGCTGCCCCACCACGCTCTGGAGGATGACGGTTGGGCAGCGGTCGCCCC
CAGCCCCAGCTCAGCACGCAGCGTGGGCAGCCATACCACACGGGACAGCAGTTCCCTGTCCAGC
TACACCTCAGGCGTCCTTGAGGAGCGCAGCCCAGCTTTCAGAGGCCCAGACAGGGTGGGGGCTG
CTCCCCCAAGGCAGCCAGACAAGGAATTCTCCTTCATGGATGAGGAAGAGGAAGACGAGATCCG
AGTTTGAGGCTGGACAGAAAGTTGAAAGTAGCTTCCACAGCTCTGGGCTGCATCTTTTCCCTGC
TGCTGCTGCCTTCACTATGACCTTTGACCTTACTTGTAGGTGCAGCTAAGCCTCATCGGAGTGG
ACCCTGGACCTCAGGGATTGGGATGCCCAGGGAGTAGCATGAGTACTGGTGCCTGGCGGCCTGA
CTCTGACCTGTCCGTCCTTCCCGCACCAGCTTGGGACAGAGCCGAGTCTGCAGGAATCCATTCT
CTTCCGGGCCCCTTGCTTCCAGCCTGGCCTCAGATGGATGCCAGATGTTGTGAGTTCCTGCTGC
AATGGCAGAGCCCCAGGTGTGGCCTCATGGACACTTGGTTCCCTTTTGTTCACCTCATGTCTGG
TGCCTACCAGGGAGGTAATGCAGCAGGAGGCAGGGGTGCCCACATATTCGGGCTCCTCCTTCCT
CCACCCTTGCCTCCTTACTGGAAGCCTGGTGCTCTTTGAGGTTCAGCTACAGCTGGGGGACAAC
TTCAACTATTACACTAAATGCAGCCTTTCCCAGGGGCCAGGACAGGATGGGGCAGAGAAGGAAC
GCCCTGCTCCCAGCTTTTTGTGGTCTCAAGAAGGACCCCCCACCCCCCTCAGCAACACTAGAAA
CAGGAAAGGGGCCAGCTTGGCCGGCCCGTGGGTGTGTTTGTTCCTTGTTGCTATGTTTAAACCT
GAATAGAGCACTGTCAGAATCCCCCACCAGAAGAGCGACTGTCTTGGTGGCAGAGTGACTGTTA
TCTGACCTGAGTTGGGGTGTACAGGCCCTGCCCAGTGTTTGTCCCTGAACCCCCCACCTCCATA
GCTGTTAATGGCTGAATGAGGAAAGTTCTGGAATATGATGCTTAAATAATGCATTATATCCCAG
TGTGATGTGTGCTTTGGCTCGTTAGTGTCCTCTCCTTGGGTTAAGGGCCAGGCTTAGCAAAAAC
ACGAAACAAAACAGGACCATATTTGATTTGGATTCCAGGGAAATGAACGTGGGTTTTTGTTTGT
TTGGTTTTGGCTTTTTGAGGTACAGTCTCACTCTGTAGCCCAAGCCAGCCTCAAGCTCCTGCAA
GCCTCCCTTTCCCTAGGAGCTGGGGTTACAAGTGTGCACCACAGTTCCTGGCTCTTTGTTTTTC
TGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGGTAGAGGCTGGGACCTGAG
CCCTGGGGAGGTGGTAGCTCATTACTTTTCTGTGCTGGGAGCAGGCTGACACACTCCCTGGTCA
AGCATAGCCAGTGGGAATCTGGGGAGAGAGCAAGCTAAATTACAAGCAGAGTCTGGCCAGATGA
TGACCAGCCATGGGTTGCTCTGCTTCCAGAGGCCTCCTTCTGATCCTGAAATGCTCACTGGGCT
CCTGACTGGTGCTCCTACGCAGGTAGGCACTGACAGAACTGCAGAGCTGTGTCTCTAGCCAGCA
GCACACACACACCCCTCTCCTAAATCTACCTGGTTGGTTCTAGACTCTAAACTTTGTATTTTTT
TCCATGACATTGATAAAGCAGTAAGAAAATATTAAAATTTCCTCCTAGCA

hide sequence

RefSeq Acc Id:

XM_006247689 ⟹ XP_006247751

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,296,307 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,797,252 (-)	NCBI
Rnor_6.0	10	102,244,680 - 102,269,181 (-)	NCBI
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI

Sequence:

show sequence

CGAGGTAGGCGATGAGCATCCGTTTGTGGCCCTGCGGCCGCGTGAAGCCTGGGTAGGCTCGAGA
CCCCTGGTGACGTGGAGAAGCCCTCTGATTGCCCTGTCTACCCTTTGCACTTGCTGGACTTGAG
ATCTGACCCCACACCTGCCTGTTGCCTTGGGAGTGCCCAGCTCCCCCCACAGCCAGCAAGATGC
CCATTCTCAAACAGCTGGTGTCCGGCTCTGTGAACTCAAAGCGACGCTCACGCGCGGACCTCAC
AGCGGAGATGATCAGTGCCCCACTGGGTGACTTCCGCCACACCATGCATGTGGGCCGGGGTGGG
GATGCCTTTGGGGACACCTCCTTCCTCACTAGCAAGACGGGCGAACCTGATGGCGAGTCCTTGG
ATGAACAGGCCACATCGTCCAAACTCAGCCTCCTGTCCCGGAAGTTCCGGGGCAGTAAACGTTC
ACAGTCTGTGACCAGAGGGGACCGGGAGCAGAGAGACATGCTGGGCTCCCTGCGGGACTCATCA
CTGTTTGTCAAGAATGCCATGTCCCTGCCTCAGCTCAATGAGAAGGAAGCCACTGAGAAGGACT
CCAGCAAGTTACCCAAGAGCTTGTCATCCAGCCCTGTGAAGAAGGCAGATACGAGAGATGGTAG
CCCAAAGAGTCCCCATCGGAACGGGGCCACAGGGCCCCACTCACCTGACCCACTCCTTGATGAG
CAGGCCTTTGGGGACCTGATGGACCTACCCGTCATGCCCAAAGTCAGCTACGGCCTGAAGCATG
CTGAGTCGATCCTGTCCTTCCACATTGACCTGGGGCCCTCCATGCTGGGAGATGTCCTCAGCAT
CATGGACAAGGACCAGTGGGGCTCGGAGGAGGAGGGAGAGGAGGAAGGCGGCATTTACCGTGTC
AAAGAAGGCCCCGGTGGCATTGTCCAGGGGCCCCCTATGCTGGAGGCATCTCCTCGAGGGAGGC
AGGAAAGCAAGGCCAGCTGGGACCATGCCTCCATGCTGCCCCACCACGCTCTGGAGGATGACGG
TTGGGCAGCGGTCGCCCCCAGCCCCAGCTCAGCACGCAGCGTGGGCAGCCATACCACACGGGAC
AGCAGTTCCCTGTCCAGCTACACCTCAGGCGTCCTTGAGGAGCGCAGCCCAGCTTTCAGAGGCC
CAGACAGGGTGGGGGCTGCTCCCCCAAGGCAGCCAGACAAGGAATTCTCCTTCATGGATGAGGA
AGAGGAAGACGAGATCCGAGTTTGAGGCTGGACAGAAAGTTGAAAGTAGCTTCCACAGCTCTGG
GCTGCATCTTTTCCCTGCTGCTGCTGCCTTCACTATGACCTTTGACCTTACTTGTAGGTGCAGC
TAAGCCTCATCGGAGTGGACCCTGGACCTCAGGGATTGGGATGCCCAGGGAGTAGCATGAGTAC
TGGTGCCTGGCGGCCTGACTCTGACCTGTCCGTCCTTCCCGCACCAGCTTGGGACAGAGCCGAG
TCTGCAGGAATCCATTCTCTTCCGGGCCCCTTGCTTCCAGCCTGGCCTCAGATGGATGCCAGAT
GTTGTGAGTTCCTGCTGCAATGGCAGAGCCCCAGGTGTGGCCTCATGGACACTTGGTTCCCTTT
TGTTCACCTCATGTCTGGTGCCTACCAGGGAGGTAATGCAGCAGGAGGCAGGGGTGCCCACATA
TTCGGGCTCCTCCTTCCTCCACCCTTGCCTCCTTACTGGAAGCCTGGTGCTCTTTGAGGTTCAG
CTACAGCTGGGGGACAACTTCAACTATTACACTAAATGCAGCCTTTCCCAGGGGCCAGGACAGG
ATGGGGCAGAGAAGGAACGCCCTGCTCCCAGCTTTTTGTGGTCTCAAGAAGGACCCCCCACCCC
CCTCAGCAACACTAGAAACAGGAAAGGGGCCAGCTTGGCCGGCCCGTGGGTGTGTTTGTTCCTT
GTTGCTATGTTTAAACCTGAATAGAGCACTGTCAGAATCCCCCACCAGAAGAGCGACTGTCTTG
GTGGCAGAGTGACTGTTATCTGACCTGAGTTGGGGTGTACAGGCCCTGCCCAGTGTTTGTCCCT
GAACCCCCCACCTCCATAGCTGTTAATGGCTGAATGAGGAAAGTTCTGGAATATGATGCTTAAA
TAATGCATTATATCCCAGTGTGATGTGTGCTTTGGCTCGTTAGTGTCCTCTCCTTGGGTTAAGG
GCCAGGCTTAGCAAAAACACGAAACAAAACAGGACCATATTTGATTTGGATTCCAGGGAAATGA
ACGTGGGTTTTTGTTTGTTTGGTTTTGGCTTTTTGAGGTACAGTCTCACTCTGTAGCCCAAGCC
AGCCTCAAGCTCCTGCAAGCCTCCCTTTCCCTAGGAGCTGGGGTTACAAGTGTGCACCACAGTT
CCTGGCTCTTTGTTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGG
TAGAGGCTGGGACCTGAGCCCTGGGGAGGTGGTAGCTCATTACTTTTCTGTGCTGGGAGCAGGC
TGACACACTCCCTGGTCAAGCATAGCCAGTGGGAATCTGGGGAGAGAGCAAGCTAAATTACAAG
CAGAGTCTGGCCAGATGATGACCAGCCATGGGTTGCTCTGCTTCCAGAGGCCTCCTTCTGATCC
TGAAATGCTCACTGGGCTCCTGACTGGTGCTCCTACGCAGGTAGGCACTGACAGAACTGCAGAG
CTGTGTCTCTAGCCAGCAGCACACACACACCCCTCTCCTAAATCTACCTGGTTGGTTCTAGACT
CTAAACTTTGTATTTTTTTCCATGACATTGATAAAGCAGTAAGAAAATATTAAAATTTCCTCCT
AGCA

hide sequence

RefSeq Acc Id:

XM_006247690 ⟹ XP_006247752

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,276,559 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,777,152 (-)	NCBI
Rnor_6.0	10	102,244,680 - 102,249,211 (-)	NCBI
Rnor_5.0	10	101,923,476 - 101,947,679 (-)	NCBI

Sequence:

show sequence

AACACACATTTAAAACAAACAAAACAAGCACACGTCACACCACAGTCTGTGTTTGGAGGTTAAA
GGACTGCCTCCCACCTTGTTCCAGACAGGGTCTCTTGTTAACTGTGGTGTAGGCCAGGCTAACC
TGCAAGCTTCTGAGGATTCTCTCTCTGCCTCCTGCCTCACTGTAGGACTGCTGGGAAACAGATT
CATTTAGCTTTAACATGGGTTCTGGGGATCTGGGACTCAGTCCTCACACTTGAGTGGCACACAT
TTTACCCACGGAGCCATCTCCCCAACCCTTTTATGTTTTAGGCTAAAGAATCTCTGACACTTGG
CCTGGGGTTCTTCCTGGCTCCCTTTGGTGTTTGCTCTGAGACCAGCAGGGTGATGATTGCTTGG
GGGTGGTCATCAGACTGGATGGTGGCTGTTTGATATGGAATTATAGAATGTAGGGAAAGAGTCA
GAGGTCATAGAGAAGTCAAGCCAGGAGCCCAGAAGCTATGCTGTGGGCTGAAAGGAGCTGATGT
GAAGGCAGACGGGAAGAGATACTGAGGGACTCAGGAATGAGGGCTGGCCATGCTTTAAATGAGT
GAAGTCCAGCTGTGTGACATATGGCGCTGGCCAGGATTTAGAACCGAGACCTGTTAGAACCTTC
TGGAAGCCCATAGCCTGGCAGGATGATTGGCATCCAGCTGGTGGGGACAGAACCATGTGACTGG
TGCCTGCCAGGAGATGCTGTGAGAAGCAGGTGGCCTAGAGGACTAGCCTTGGCTATGAGGCTTT
CCTTGGCTATGAGGCCAAATTGTCCTGGCTGAGGATGTTGGTGGCACCGGATGGTGGGGTGTCA
GAAGAGGACACCCTTGTATCAAGCCCAAGAATGGGGCAGGAGAGCAAGGGAAGGGTTGCTGGCT
GATAGTGGCATTGAGGACATCAACAGGGACCGTCCTGGGAGGTTCGCAGGAAAGAGAGTGTCAT
TTGTGGACTTATGGTCAGAGATCCTTTTTGGAGGGGGGTGGTGGCCTTTGTTTATTTAGCTAAG
AAAGCAAGAATTTCTAGTTAGTCACTCAGGGTCCTGCACATCCCAAGATAAAGTCATCCAGCCC
TAGTAATAAACCGGGAGGGGGTTTTCCCAACTTCATCTTCCCAAAGCATGGGAGATGAAGCCTG
TGATACACAGAGCTTGGGACCTCACAGTGATGTCCCAGGCAGGAGTCTCCACGTATGTGACACT
CCCATAAGGGCTGGAAGGCCAGGGAGCTGAGCTGGTCCTGTGGGTCCCTACGCGTCCAGCCCAA
TTCTGATTCAGAGAGTCAGGTTGACCAGCTGCCCACATATGTAGAAGTGACGGACAGCGTTTGG
GCTTGGCCTACCCATTCCGTTCTCTCTGACTCAGGCTGAGGTGTCCAACTCTACAGGGATTCAG
GTTAGACAACAGGAAGTTCTCGGAGCTTGCCTGCAGATCAGCTGCCTGGAGCCTACTTGCTTCG
GTACCTTTAGGAGCCCTCTGATTGCCCTGTCTACCCTTTGCACTTGCTGGACTTGAGATCTGAC
CCCACACCTGCCTGTTGCCTTGGGAGTGCCCAGCTCCCCCCACAGCCAGCAAGATGCCCATTCT
CAAACAGCTGGTGTCCGGCTCTGTGAACTCAAAGCGACGCTCACGCGCGGACCTCACAGCGGAG
ATGATCAGTGCCCCACTGGGTGACTTCCGCCACACCATGCATGTGGGCCGGGGTGGGGATGCCT
TTGGGGACACCTCCTTCCTCACTAGCAAGACGGGCGAACCTGATGGCGAGTCCTTGGATGAACA
GGCCACATCGTCCAAACTCAGCCTCCTGTCCCGGAAGTTCCGGGGCAGTAAACGTTCACAGTCT
GTGACCAGAGGGGACCGGGAGCAGAGAGACATGCTGGGCTCCCTGCGGGACTCATCACTGTTTG
TCAAGAATGCCATGTCCCTGCCTCAGCTCAATGAGAAGGAAGCCACTGAGAAGGACTCCAGCAA
GTTACCCAAGAGCTTGTCATCCAGCCCTGTGAAGAAGGCAGATACGAGAGATGGTAGCCCAAAG
AGTCCCCATCGGAACGGGGCCACAGGGCCCCACTCACCTGACCCACTCCTTGATGAGCAGGCCT
TTGGGGACCTGATGGACCTACCCGTCATGCCCAAAGTCAGCTACGGCCTGAAGCATGCTGAGTC
GATCCTGTCCTTCCACATTGACCTGGGGCCCTCCATGCTGGGAGATGTCCTCAGCATCATGGAC
AAGGACCAGTGGGGCTCGGAGGAGGAGGGAGAGGAGGAAGGCGGCATTTACCGTGTCAAAGAAG
GCCCCGGTGGCATTGTCCAGGGGCCCCCTATGCTGGAGGCATCTCCTCGAGGGAGGCAGGAAAG
CAAGGCCAGCTGGGACCATGCCTCCATGCTGCCCCACCACGCTCTGGAGGATGACGGTTGGGCA
GCGGTCGCCCCCAGCCCCAGCTCAGCACGCAGCGTGGGCAGCCATACCACACGGGACAGCAGTT
CCCTGTCCAGCTACACCTCAGGCGTCCTTGAGGAGCGCAGCCCAGCTTTCAGAGGCCCAGACAG
GGTGGGGGCTGCTCCCCCAAGGCAGCCAGACAAGGAATTCTCCTTCATGGATGAGGAAGAGGAA
GACGAGATCCGAGTTTGAGGCTGGACAGAAAGTTGAAAGTAGCTTCCACAGCTCTGGGCTGCAT
CTTTTCCCTGCTGCTGCTGCCTTCACTATGACCTTTGACCTTACTTGTAGGTGCAGCTAAGCCT
CATCGGAGTGGACCCTGGACCTCAGGGATTGGGATGCCCAGGGAGTAGCATGAGTACTGGTGCC
TGGCGGCCTGACTCTGACCTGTCCGTCCTTCCCGCACCAGCTTGGGACAGAGCCGAGTCTGCAG
GAATCCATTCTCTTCCGGGCCCCTTGCTTCCAGCCTGGCCTCAGATGGATGCCAGATGTTGTGA
GTTCCTGCTGCAATGGCAGAGCCCCAGGTGTGGCCTCATGGACACTTGGTTCCCTTTTGTTCAC
CTCATGTCTGGTGCCTACCAGGGAGGTAATGCAGCAGGAGGCAGGGGTGCCCACATATTCGGGC
TCCTCCTTCCTCCACCCTTGCCTCCTTACTGGAAGCCTGGTGCTCTTTGAGGTTCAGCTACAGC
TGGGGGACAACTTCAACTATTACACTAAATGCAGCCTTTCCCAGGGGCCAGGACAGGATGGGGC
AGAGAAGGAACGCCCTGCTCCCAGCTTTTTGTGGTCTCAAGAAGGACCCCCCACCCCCCTCAGC
AACACTAGAAACAGGAAAGGGGCCAGCTTGGCCGGCCCGTGGGTGTGTTTGTTCCTTGTTGCTA
TGTTTAAACCTGAATAGAGCACTGTCAGAATCCCCCACCAGAAGAGCGACTGTCTTGGTGGCAG
AGTGACTGTTATCTGACCTGAGTTGGGGTGTACAGGCCCTGCCCAGTGTTTGTCCCTGAACCCC
CCACCTCCATAGCTGTTAATGGCTGAATGAGGAAAGTTCTGGAATATGATGCTTAAATAATGCA
TTATATCCCAGTGTGATGTGTGCTTTGGCTCGTTAGTGTCCTCTCCTTGGGTTAAGGGCCAGGC
TTAGCAAAAACACGAAACAAAACAGGACCATATTTGATTTGGATTCCAGGGAAATGAACGTGGG
TTTTTGTTTGTTTGGTTTTGGCTTTTTGAGGTACAGTCTCACTCTGTAGCCCAAGCCAGCCTCA
AGCTCCTGCAAGCCTCCCTTTCCCTAGGAGCTGGGGTTACAAGTGTGCACCACAGTTCCTGGCT
CTTTGTTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGGTAGAGGC
TGGGACCTGAGCCCTGGGGAGGTGGTAGCTCATTACTTTTCTGTGCTGGGAGCAGGCTGACACA
CTCCCTGGTCAAGCATAGCCAGTGGGAATCTGGGGAGAGAGCAAGCTAAATTACAAGCAGAGTC
TGGCCAGATGATGACCAGCCATGGGTTGCTCTGCTTCCAGAGGCCTCCTTCTGATCCTGAAATG
CTCACTGGGCTCCTGACTGGTGCTCCTACGCAGGTAGGCACTGACAGAACTGCAGAGCTGTGTC
TCTAGCCAGCAGCACACACACACCCCTCTCCTAAATCTACCTGGTTGGTTCTAGACTCTAAACT
TTGTATTTTTTTCCATGACATTGATAAAGCAGTAAGAAAATATTAAAATTTCCTCCTAGCA

hide sequence

RefSeq Acc Id:

XM_039086181 ⟹ XP_038942109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,283,403 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,781,266 (-)	NCBI

RefSeq Acc Id:

XM_039086182 ⟹ XP_038942110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	99,271,750 - 99,298,551 (-)	NCBI
mRatBN7.2	10	98,772,613 - 98,797,924 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100533	(Get FASTA)	NCBI Sequence Viewer
	XP_006247750	(Get FASTA)	NCBI Sequence Viewer
	XP_006247751	(Get FASTA)	NCBI Sequence Viewer
	XP_006247752	(Get FASTA)	NCBI Sequence Viewer
	XP_038942109	(Get FASTA)	NCBI Sequence Viewer
	XP_038942110	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61986	(Get FASTA)	NCBI Sequence Viewer
	EDM06527	(Get FASTA)	NCBI Sequence Viewer
	EDM06528	(Get FASTA)	NCBI Sequence Viewer
	EDM06529	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045828.3
	ENSRNOP00000077095.1
	ENSRNOP00000078041.1
	ENSRNOP00000090992.1

RefSeq Acc Id:

NP_001100533 ⟸ NM_001107063

- UniProtKB:

B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPILKQLVSGSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRGGDAFGDTSFLTSKTGEPDGES
LDEQATSSKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSSLFVKNAMSLPQLNEKEATEK
DSSKLPKSLSSSPVKKADTRDGSPKSPHRNGATGPHSPDPLLDEQAFGDLMDLPVMPKVSYGLK
HAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEGEEEGGIYRVKEGPGGIVQGPPMLEASPRG
RQESKASWDHASMLPHHALEDDGWAAVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFR
GPDRVGAAPPRQPDKEFSFMDEEEEDEIRV

hide sequence

RefSeq Acc Id:	XP_006247751 ⟸ XM_006247689
- Peptide Label:	isoform X1
- UniProtKB:	B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPILKQLVSGSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRGGDAFGDTSFLTSKTGEPDGES LDEQATSSKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSSLFVKNAMSLPQLNEKEATEK DSSKLPKSLSSSPVKKADTRDGSPKSPHRNGATGPHSPDPLLDEQAFGDLMDLPVMPKVSYGLK HAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEGEEEGGIYRVKEGPGGIVQGPPMLEASPRG RQESKASWDHASMLPHHALEDDGWAAVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFR GPDRVGAAPPRQPDKEFSFMDEEEEDEIRV hide sequence

RefSeq Acc Id:	XP_006247750 ⟸ XM_006247688
- Peptide Label:	isoform X1
- UniProtKB:	B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPILKQLVSGSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRGGDAFGDTSFLTSKTGEPDGES LDEQATSSKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSSLFVKNAMSLPQLNEKEATEK DSSKLPKSLSSSPVKKADTRDGSPKSPHRNGATGPHSPDPLLDEQAFGDLMDLPVMPKVSYGLK HAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEGEEEGGIYRVKEGPGGIVQGPPMLEASPRG RQESKASWDHASMLPHHALEDDGWAAVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFR GPDRVGAAPPRQPDKEFSFMDEEEEDEIRV hide sequence

RefSeq Acc Id:	XP_006247752 ⟸ XM_006247690
- Peptide Label:	isoform X1
- UniProtKB:	B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPILKQLVSGSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRGGDAFGDTSFLTSKTGEPDGES LDEQATSSKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSSLFVKNAMSLPQLNEKEATEK DSSKLPKSLSSSPVKKADTRDGSPKSPHRNGATGPHSPDPLLDEQAFGDLMDLPVMPKVSYGLK HAESILSFHIDLGPSMLGDVLSIMDKDQWGSEEEGEEEGGIYRVKEGPGGIVQGPPMLEASPRG RQESKASWDHASMLPHHALEDDGWAAVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFR GPDRVGAAPPRQPDKEFSFMDEEEEDEIRV hide sequence

Ensembl Acc Id:

ENSRNOP00000045828 ⟸ ENSRNOT00000048264

RefSeq Acc Id:	XP_038942110 ⟸ XM_039086182
- Peptide Label:	isoform X1
- UniProtKB:	B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942109 ⟸ XM_039086181
- Peptide Label:	isoform X1
- UniProtKB:	B1WC33 (UniProtKB/TrEMBL), A0A8I5Y758 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090992 ⟸ ENSRNOT00000110444

Ensembl Acc Id:

ENSRNOP00000078041 ⟸ ENSRNOT00000096566

Ensembl Acc Id:

ENSRNOP00000077095 ⟸ ENSRNOT00000097816

Protein Domains

CRIB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WC33-F1-model_v2	AlphaFold	B1WC33	1-350	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697870

Promoter ID:

EPDNEW_R8395

Type:

initiation region

Name:

Cdc42ep4_1

Description:

CDC42 effector protein 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	102,269,311 - 102,269,371	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311567	AgrOrtholog
BioCyc Gene	G2FUF-22756	BioCyc
Ensembl Genes	ENSRNOG00000028946	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000048264.4	UniProtKB/TrEMBL
	ENSRNOT00000096566.1	UniProtKB/TrEMBL
	ENSRNOT00000097816.1	UniProtKB/TrEMBL
	ENSRNOT00000110444.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:9030824	IMAGE-MGC_LOAD
InterPro	Cdc42_effect	UniProtKB/TrEMBL
	Cdc42_Effector_BORG/CEP	UniProtKB/TrEMBL
	PAK_box_Rho-bd	UniProtKB/TrEMBL
KEGG Report	rno:303653	UniProtKB/TrEMBL
MGC_CLONE	MGC:187805	IMAGE-MGC_LOAD
NCBI Gene	303653	ENTREZGENE
PANTHER	CDC42 EFFECTOR PROTEIN 4	UniProtKB/TrEMBL
	CDC42 EFFECTOR PROTEIN BORG	UniProtKB/TrEMBL
Pfam	BORG_CEP	UniProtKB/TrEMBL
	PBD	UniProtKB/TrEMBL
PhenoGen	Cdc42ep4	PhenoGen
PROSITE	CRIB	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000028946	RatGTEx
SMART	PBD	UniProtKB/TrEMBL
UniProt	A0A8I5Y758	ENTREZGENE, UniProtKB/TrEMBL
	B1WC33	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-13	Cdc42ep4	CDC42 effector protein 4	Cdc42ep4	CDC42 effector protein (Rho GTPase binding) 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Cdc42ep4	CDC42 effector protein (Rho GTPase binding) 4	Cdc42ep4_predicted	CDC42 effector protein (Rho GTPase binding) 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cdc42ep4_predicted	CDC42 effector protein (Rho GTPase binding) 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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