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Gene: Slc36a4 (solute carrier family 36 member 4) Rattus norvegicus

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Symbol:

Slc36a4

Name:

solute carrier family 36 member 4

RGD ID:

1311528

Description:

Predicted to enable L-alanine transmembrane transporter activity; L-proline transmembrane transporter activity; and L-tryptophan transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and carboxylic acid transport. Predicted to be located in lysosomal membrane. Predicted to be active in vacuolar membrane. Orthologous to human SLC36A4 (solute carrier family 36 member 4); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC315439; neutral amino acid uniporter 4; proton-coupled amino acid transporter 4; solute carrier family 36 (proton/amino acid symporter), member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC36A4 (solute carrier family 36 member 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc36a4 (solute carrier family 36 (proton/amino acid symporter), member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc36a4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC36A4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC36A4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc36a4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC36A4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC36A4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc36a4 (solute carrier family 36 member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC36A4 (solute carrier family 36 member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc36a4 (solute carrier family 36 (proton/amino acid symporter), member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc36a4 (solute carrier family 36 member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1139	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	AVT4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y43F4B.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	skat-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	slc-36.4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG13384	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVT3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16700	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7888	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG32079	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG32081	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG43693	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4991	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8785	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	path	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	polyph	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.5	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc36a4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	20,801,256 - 20,834,046 (+)	NCBI		GRCr8
mRatBN7.2	8	12,519,613 - 12,552,671 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	12,519,943 - 12,552,031 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	16,506,726 - 16,536,678 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	14,804,480 - 14,834,432 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	12,782,331 - 12,813,520 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	14,238,975 - 14,271,931 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	14,239,594 - 14,269,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	14,329,327 - 14,360,233 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	12,504,817 - 12,534,782 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	12,504,818 - 12,533,407 (+)	NCBI
Celera	8	13,985,685 - 14,015,651 (+)	NCBI		Celera
Cytogenetic Map	8	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

butanal (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

diclofenac (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

maneb (ISO)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

potassium chromate (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

thiram (ISO)

titanium dioxide (EXP)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amino acid transmembrane transport (IBA)

inorganic cation transmembrane transport (IEA)

L-alanine transport (IBA,ISO)

monoatomic cation transmembrane transport (IEA)

monoatomic ion transmembrane transport (IEA)

proline transmembrane transport (IEA)

proline transport (ISO)

tryptophan transport (ISO)

Cellular Component

lysosomal membrane (ISO)

membrane (IEA)

vacuolar membrane (IBA)

Molecular Function

active monoatomic ion transmembrane transporter activity (IEA)

inorganic cation transmembrane transporter activity (IEA)

L-alanine transmembrane transporter activity (IBA,ISO)

L-proline transmembrane transporter activity (IBA,ISO)

L-tryptophan transmembrane transporter activity (ISO)

monoatomic cation transmembrane transporter activity (IEA)

neutral L-amino acid transmembrane transporter activity (IEA)

secondary active transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

nicotinamide adenine dinucleotide metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	The human NAD metabolome: Functions, metabolism and compartmentalization.	Nikiforov A, etal., Crit Rev Biochem Mol Biol. 2015;50(4):284-97. doi: 10.3109/10409238.2015.1028612. Epub 2015 Apr 2.
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21097500

Genomics

Comparative Map Data

Slc36a4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	20,801,256 - 20,834,046 (+)	NCBI		GRCr8
mRatBN7.2	8	12,519,613 - 12,552,671 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	12,519,943 - 12,552,031 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	16,506,726 - 16,536,678 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	14,804,480 - 14,834,432 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	12,782,331 - 12,813,520 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	14,238,975 - 14,271,931 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	14,239,594 - 14,269,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	14,329,327 - 14,360,233 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	12,504,817 - 12,534,782 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	12,504,818 - 12,533,407 (+)	NCBI
Celera	8	13,985,685 - 14,015,651 (+)	NCBI		Celera
Cytogenetic Map	8	q12	NCBI

SLC36A4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	93,144,174 - 93,197,991 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	93,144,174 - 93,197,991 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	92,877,340 - 92,931,157 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	92,520,498 - 92,570,743 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	92,520,499 - 92,570,743	NCBI
Celera	11	90,179,804 - 90,230,049 (-)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI
HuRef	11	88,965,724 - 89,015,692 (-)	NCBI		HuRef
CHM1_1	11	92,763,842 - 92,814,140 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	93,066,962 - 93,120,802 (-)	NCBI		T2T-CHM13v2.0

Slc36a4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	15,621,034 - 15,653,684 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	15,621,034 - 15,654,657 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	15,709,738 - 15,742,388 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	15,709,738 - 15,743,361 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	15,514,213 - 15,543,233 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	15,460,162 - 15,489,182 (+)	NCBI		MGSCv36	mm8
Celera	9	12,988,023 - 13,017,043 (+)	NCBI		Celera
Cytogenetic Map	9	A2	NCBI
cM Map	9	5.12	NCBI

Slc36a4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	1,236,141 - 1,285,610 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	1,236,179 - 1,286,680 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC36A4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	94,008,249 - 94,062,806 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	95,097,192 - 95,150,608 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	88,164,083 - 88,218,610 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	91,662,625 - 91,880,929 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	91,663,479 - 91,713,388 (-)	Ensembl	panpan1.1		panPan2

SLC36A4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	7,476,291 - 7,523,463 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	7,475,648 - 7,520,331 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	7,474,725 - 7,538,019 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	7,635,696 - 7,698,997 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	7,635,686 - 7,698,993 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	7,421,675 - 7,481,882 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	7,490,947 - 7,554,286 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	7,535,348 - 7,598,628 (+)	NCBI		UU_Cfam_GSD_1.0

Slc36a4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	78,289,864 - 78,363,803 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936674	1,567,675 - 1,601,635 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936674	1,567,718 - 1,601,561 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC36A4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	25,639,387 - 25,689,028 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	25,639,370 - 25,689,177 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	28,983,529 - 29,033,251 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC36A4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	84,393,698 - 84,487,984 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	84,398,027 - 84,445,971 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	41,344,168 - 41,395,986 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc36a4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	37,791,206 - 37,831,776 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	37,791,690 - 37,831,749 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc36a4
278 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	839
Count of miRNA genes:	304
Interacting mature miRNAs:	390
Transcripts:	ENSRNOT00000015383
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	24597739	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317882	Alcrsp24	Alcohol response QTL 24	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	8	1	25902202	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015383 ⟹ ENSRNOP00000015383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	12,519,943 - 12,552,031 (+)	Ensembl
Rnor_6.0 Ensembl	8	14,239,594 - 14,269,162 (+)	Ensembl

RefSeq Acc Id:

NM_001108127 ⟹ NP_001101597

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,801,320 - 20,831,285 (+)	NCBI
mRatBN7.2	8	12,519,943 - 12,549,909 (+)	NCBI
Rnor_6.0	8	14,239,594 - 14,269,170 (+)	NCBI
Rnor_5.0	8	14,329,327 - 14,360,233 (+)	NCBI
RGSC_v3.4	8	12,504,817 - 12,534,782 (+)	RGD
Celera	8	13,985,685 - 14,015,651 (+)	RGD

Sequence:

show sequence

GCGGCGACCTGGAGACCCCCGAGGGATGGAAGCGCCGGCGCCGGCGGAGGCGGCGGGATGCGAG
GAGCTCGATATGGACGTGATGAGGCCCTTAATAAACGAACAGAATTTCGATGGGTCGTCCGACG
AGGAGCAGGAACAGACGCTTCTGCCCATGCAGAAACACTACCAGCTCGATGGGCAGCATGGGAT
TTCGTTTGTGCAGACCTTGATGCACCTTCTCAAGGGGAACATTGGAACCGGCCTCTTAGGGCTT
CCCTTGGCAATAAAGAATGCAGGCATCGTGCTTGGACCAATCAGCCTTGTGTTTATAGGAATTA
TTTCCGTCCACTGTATGCACATATTGGTACGTTGCAGTCACTTTCTATGTCAGAGGTTTAAGAA
GTCAACGTTGGGGTACAGTGACACTGTGAGTTTTGCCATGGAGGCCAGCCCGTGGAGTTGTCTT
CAGAGGCAGGCAGCGTGGGGGCGGAGCGTGGTCGACTTCTTTCTGGTGATAACACAGCTGGGAT
TCTGCAGTGTCTATATTGTCTTCTTAGCTGAGAATGTGAAACAGGTTCATGAAGGACTCCTGGA
GACCACAGTGGTCGTTTCGAATAGCTCGGATCTGTCTCAAGTCTGTGAGAGGAGAAGTGTGGAC
CTCAGGGTCTACATGCTCTGCTTTCTCCCACTTCTAATTCTCTTGGTGTTCATTCGAGAGCTGA
AGAGTCTCTTTGTACTCTCATTCCTTGCCAACATTTCCATGGCTGCCAGTCTCGTGATAATTTA
CCAGTATGTTGTTAGGAGCATGCCGGATCCCCACAACCTTCCGATAGTCGCGGGGTGGAAGAAA
TACCCACTGTTCTTCGGTACCGCTGTGTTTGCTTTTGAAGGCATAGGCGTGGTGCTGCCACTGG
AAAACCAAATGAGAGAGTCCAAGCGCTTCCCTCAGGCGTTGAACATTGGCATGGCCATCGTCAC
GGTGCTGTACATCAGCCTGGCCACGTTAGGCTACATGTGTTTCCGAGATGAGATCAAAGGCAGC
ATAACACTGAATCTTCCCCAGGACATGTGGTTGTATCAGTCAGTGAAAATCCTGTATTCCTTTG
GCATTTTTGTGACCTATTCTATTCAGTTCTATGTCCCAGCAGAGATCATTATCCCCGCAGTCAC
TGCTAGACTTCATGCCAAATGGAAGTGCATCTGTGACTTTGGGATACGGTCCCTCTTGGTTAGT
ATCACCTGTGCTGGCGCGGTTCTCATTCCCCGCCTGGACATTGTGATCTCCTTCGTGGGGGCTG
TGAGTAGCAGCACTCTAGCCCTGATCCTGCCCCCGCTTGTGGAGATCCTGACGTTTTCCAAGGA
CCATTACAACGTATGGATGGTCCTGAAGAACATTTCCATAGCGTTCACTGGGTTCGTGGGCTTC
TTGTTGGGCACGTATGTCACCGTCGAAGAAATTATTTATCCAACTACAGCAGTTGCTGATGGCG
CCTCCCAGAGTCTCTCTCTGAACGTGAACTCTACATGTGTATCAAGTGGTTTGTAATAGTGGGA
GAAGAGCGGTGAACCCTCCGTTGTCACCCCAGTTCTAACAGCAATCAAGAACGGGTACAGTGTA
TCGCCATACACTAAACACAGTGCCAAACTCCTGTTTTTGTTGGCAGAGTATTGTAATTTGACTG
TGAACTGACATCTTTTGTAGCTGTGATAAACTATAGCAGATTATTGCTTTTATCTAATGACAAT
GAAACATTTTAAATTAGCTTTGAAGACTGAAAAAGTTTAAAATTCAAAACGGAAACAATAAGCA
TAGCCTGTTATTCTTTGTTTCTGTAAGAAATACTTTGGGTCATCTTTCTTACCACCATTGAGAA
GACAAAGGATTTCAACATGGTATAAATTAAATAGGGGCATAGTTTTAAAAACCTCTTGGAAGCA
TCCCACAATAGCAGTGTTTACCTCCTGTGTACGTGTGCACAAAAATGCACTGATGGTGTTTTCT
TCCGTGGGTGATGCTGCTGACGGGGCGATGCCTTGGAGGGATGGCAGATTCCCACTGACCACCG
TGTGAGCAGTAGAGCGTTCCCAGAGCCAGAGTCGCTTTATTGTGCAGCTATTCAGAGGGTAGAG
CGTCACGGTCACTGAGCAAGGCTCTGACTTCCTGTTTCAGTCGTAGGTGAAAAGGTCACGGAGG
TATCTGGAATATCGCTCCCTTAGTTCTGTCTTAACTTAAGGGAGTTATTGCTCCCTTAGTTGTT
CTGTCTTAACTTGAGGGAGTTATTGCTCTCTCAGTTGGGTTTCTGTCACTGATACAACAGCACA
ACCAGAAGCAATTCTGCAGGAGAAGGCTTCAGTTTACAGTTCCACACCACAGTCCTTCATTAAG
GGGAGTGAGGGCAGGAACTCAAGGCGGGAACCTGGAGGCAGGAACTGACGAAGATGCCATGGAG
GGGTGCTGCTTATTGGCTTGCTTCTTGTGGCTTGCTTCTCGTGGCTTGCTTCTCGTGGCTTGCT
TCTCGTGGCTTGCTTCTCGTGGCTTGCTTCTCATGGCTTGCTCAGCCTGCTTTTTTATAGTACC
CAGGGTAGCCAGCCCGGGTTGGTACCACCCACAGTGGGTATATCCCTCCCACCTCGATCATCAA
TCTGGAAAATGCCCCCACAGGCTTGCCTGCAGTTCTGTCTTGCAGAGACATTGTCTTGATTGAG
TCTCTTCCAAAACCACTCCAGATTGTGTTAAGCTGACTTAAAATTCGCCAGGATGGCTACCGTT
GTAGGAAATGGAGTCCCAGAATGCTGGGTTACTTGGTCAAGAGGACTTAGGCTGGAGTCAAGAG
AACCTGACACGTGACCCAATGAAACAATTATTTTTCATGTCACAGTCAGTAAGAATTAAACACA
CCAGTTTAATGTTAGTGTAAAGTTCAGTTACATTTTCATCCTTTGGGAGAGTGTCCTATCTCCG
AATAGTATTTGTGACGAGATTAAAAAGCC

hide sequence

RefSeq Acc Id:

XM_006242558 ⟹ XP_006242620

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,801,256 - 20,834,046 (+)	NCBI
mRatBN7.2	8	12,519,613 - 12,548,333 (+)	NCBI
Rnor_6.0	8	14,238,975 - 14,267,552 (+)	NCBI
Rnor_5.0	8	14,329,327 - 14,360,233 (+)	NCBI

Sequence:

show sequence

AACACACAGACCTGCCTGCCTCTTCCTCTGAGTGCTGGGGCACTATGAAGTCTTCAATCTTAAA
ATTAGGTATCTTGTCTGTGGATTAATCGTACATTTATTGGTGTCCACTCGAGGCCAGCTTTGCA
TGCAGGCTGAGAGTCCCCGCTGAAGTGGCAGATGCCTCGCCTGCCTTCATTGGTTTACTGTTGG
TGGTGGTGAAGTGACTTCCCTTTGCGTGGGCAGTGAGCTCAGTGGCTTACAGATTACATTGAGT
AGTGTAACGCCTGACAGTGTGGGACACCTCCCTCTAAGCCTTAACCCTGACGCCAGCAGTCTTT
AAGACACCAGTGCCAGAGCCTACCAACATCGAGCTGCCTTTGCTAGTGTCAGCTACGGTGGACG
AAGACTGACAGTCGGCCGTCGGAGTTGCAGTCTGCCTGCTTTCCGCGCGGTCCGAGACCCTGTC
TCCCCGGCACCCGAAGCCCCGGAGTTCAGAGAATAGCTCCTTAGCCTTTAGGTGCGGCTCCTGT
CACCCTGCGAGGCGCGGACCCGCGTGGGCTACGGTCAAGGCCGGCCCGGGCCCCGCCCCTCGGG
GCGGCTCTGCGCATGCTCGGCGGTGCGGCCGGCAGAGCGGGCGGCGGCGACCTGGAGACCCCCG
AGGGATGGAAGCGCCGGCGCCGGCGGAGGCGGCGGGATGCGAGGAGCTCGATATGGACGTGATG
AGGCCCTTAATAAACGAACAGAATTTCGATGGGTCGTCCGACGAGGAGCAGGAACAGACGCTTC
TGCCCATGCAGAAACACTACCAGCTCGATGGGCAGCATGGGATTTCGTTTGTGCAGACCTTGAT
GCACCTTCTCAAGGGGAACATTGGAACCGGCCTCTTAGGGCTTCCCTTGGCAATAAAGAATGCA
GGCATCGTGCTTGGACCAATCAGCCTTGTGTTTATAGGAATTATTTCCGTCCACTGTATGCACA
TATTGGTACGTTGCAGTCACTTTCTATGTCAGAGGTTTAAGAAGTCAACGTTGGGGTACAGTGA
CACTGTGAGTTTTGCCATGGAGGCCAGCCCGTGGAGTTGTCTTCAGAGGCAGGCAGCGTGGGGG
CGGAGCGTGGTCGACTTCTTTCTGGTGATAACACAGCTGGGATTCTGCAGTGTCTATATTGTCT
TCTTAGCTGAGAATGTGAAACAGGTTCATGAAGGACTCCTGGAGACCACAGTGGTCGTTTCGAA
TAGCTCGGATCTGTCTCAAGTCTGTGAGAGGAGAAGTGTGGACCTCAGGGTCTACATGCTCTGC
TTTCTCCCACTTCTAATTCTCTTGGTGTTCATTCGAGAGCTGAAGAGTCTCTTTGTACTCTCAT
TCCTTGCCAACATTTCCATGGCTGCCAGTCTCGTGATAATTTACCAGTATGTTGTTAGGAGCAT
GCCGGATCCCCACAACCTTCCGATAGTCGCGGGGTGGAAGAAATACCCACTGTTCTTCGGTACC
GCTGTGTTTGCTTTTGAAGGCATAGGCGTGGTGCTGCCACTGGAAAACCAAATGAGAGAGTCCA
AGCGCTTCCCTCAGGCGTTGAACATTGGCATGGCCATCGTCACGGTGCTGTACATCAGCCTGGC
CACGTTAGGCTACATGTGTTTCCGAGATGAGATCAAAGGCAGCATAACACTGAATCTTCCCCAG
GACATGTGGTTGTATCAGTCAGTGAAAATCCTGTATTCCTTTGGCATTTTTGTGACCTATTCTA
TTCAGTTCTATGTCCCAGCAGAGATCATTATCCCCGCAGTCACTGCTAGACTTCATGCCAAATG
GAAGTGCATCTGTGACTTTGGGATACGGTCCCTCTTGGTGCTGGCGCGGTTCTCATTCCCCGCC
TGGACATTGTGATCTCCTTCGTGGGGGCTGTGAGTAGCAGCACTCTAGCCCTGATCCTGCCCCC
GCTTGTGGAGATCCTGACGTTTTCCAAGGACCATTACAACG

hide sequence

RefSeq Acc Id:

XM_008765939 ⟹ XP_008764161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	20,814,356 - 20,834,046 (+)	NCBI
mRatBN7.2	8	12,532,976 - 12,552,671 (+)	NCBI
Rnor_6.0	8	14,253,831 - 14,271,931 (+)	NCBI

Sequence:

show sequence

CTTGGACCAATCAGCCTTGTGTTTATAGGAATTATTTCCGTCCACTGTATGCACATATTGGTTT
AAGAAGTCAACGTTGGGGTACAGTGACACTGTGAGTTTTGCCATGGAGGCCAGCCCGTGGAGTT
GTCTTCAGAGGCAGGCAGCGTGGGGGCGGAGCGTGGTCGACTTCTTTCTGGTGATAACACAGCT
GGGATTCTGCAGTGTCTATATTGTCTTCTTAGCTGAGAATGTGAAACAGGTTCATGAAGGACTC
CTGGAGACCACAGTGGTCGTTTCGAATAGCTCGGATCTGTCTCAAGTCTGTGAGAGGAGAAGTG
TGGACCTCAGGGTCTACATGCTCTGCTTTCTCCCACTTCTAATTCTCTTGGTGTTCATTCGAGA
GCTGAAGAGTCTCTTTGTACTCTCATTCCTTGCCAACATTTCCATGGCTGCCAGTCTCGTGATA
ATTTACCAGTATGTTGTTAGGAGCATGCCGGATCCCCACAACCTTCCGATAGTCGCGGGGTGGA
AGAAATACCCACTGTTCTTCGGTACCGCTGTGTTTGCTTTTGAAGGCATAGGCGTGGTGCTGCC
ACTGGAAAACCAAATGAGAGAGTCCAAGCGCTTCCCTCAGGCGTTGAACATTGGCATGGCCATC
GTCACGGTGCTGTACATCAGCCTGGCCACGTTAGGCTACATGTGTTTCCGAGATGAGATCAAAG
GCAGCATAACACTGAATCTTCCCCAGGACATGTGGTTGTATCAGTCAGTGAAAATCCTGTATTC
CTTTGGCATTTTTGTGACCTATTCTATTCAGTTCTATGTCCCAGCAGAGATCATTATCCCCGCA
GTCACTGCTAGACTTCATGCCAAATGGAAGTGCATCTGTGACTTTGGGATACGGTCCCTCTTGG
TTAGTATCACCTGTGCTGGCGCGGTTCTCATTCCCCGCCTGGACATTGTGATCTCCTTCGTGGG
GGCTGTGAGTAGCAGCACTCTAGCCCTGATCCTGCCCCCGCTTGTGGAGATCCTGACGTTTTCC
AAGGACCATTACAACGTATGGATGGTCCTGAAGAACATTTCCATAGCGTTCACTGGGTTCGTGG
GCTTCTTGTTGGGCACGTATGTCACCGTCGAAGAAATTATTTATCCAACTACAGCAGTTGCTGA
TGGCGCCTCCCAGAGTCTCTCTCTGAACGTGAACTCTACATGTGTATCAAGTGGTTTGTAATAG
TGGGAGAAGAGCGGTGAACCCTCCGTTGTCACCCCAGTTCTAACAGCAATCAAGAACGGGTACA
GTGTATCGCCATACACTAAACACAGTGCCAAACTCCTGTTTTTGTTGGCAGAGTATTGTAATTT
GACTGTGAACTGACATCTTTTGTAGCTGTGATAAACTATAGCAGATTATTGCTTTTATCTAATG
ACAATGAAACATTTTAAATTAGCTTTGAAGACTGAAAAAGTTTAAAATTCAAAACGGAAACAAT
AAGCATAGCCTGTTATTCTTTGTTTCTGTAAGAAATACTTTGGGTCATCTTTCTTACCACCATT
GAGAAGACAAAGGATTTCAACATGGTATAAATTAAATAGGGGCATAGTTTTAAAAACCTCTTGG
AAGCATCCCACAATAGCAGTGTTTACCTCCTGTGTACGTGTGCACAAAAATGCACTGATGGTGT
TTTCTTCCGTGGGTGATGCTGCTGACGGGGCGATGCCTTGGAGGGATGGCAGATTCCCACTGAC
CACCGTGTGAGCAGTAGAGCGTTCCCAGAGCCAGAGTCGCTTTATTGTGCAGCTATTCAGAGGG
TAGAGCGTCACGGTCACTGAGCAAGGCTCTGACTTCCTGTTTCAGTCGTAGGTGAAAAGGTCAC
GGAGGTATCTGGAATATCGCTCCCTTAGTTCTGTCTTAACTTAAGGGAGTTATTGCTCCCTTAG
TTGTTCTGTCTTAACTTGAGGGAGTTATTGCTCTCTCAGTTGGGTTTCTGTCACTGATACAACA
GCACAACCAGAAGCAATTCTGCAGGAGAAGGCTTCAGTTTACAGTTCCACACCACAGTCCTTCA
TTAAGGGGAGTGAGGGCAGGAACTCAAGGCGGGAACCTGGAGGCAGGAACTGACGAAGATGCCA
TGGAGGGGTGCTGCTTATTGGCTTGCTTCTTGTGGCTTGCTTCTCGTGGCTTGCTTCTCGTGGC
TTGCTTCTCGTGGCTTGCTTCTCGTGGCTTGCTTCTCATGGCTTGCTCAGCCTGCTTTTTTATA
GTACCCAGGGTAGCCAGCCCGGGTTGGTACCACCCACAGTGGGTATATCCCTCCCACCTCGATC
ATCAATCTGGAAAATGCCCCCACAGGCTTGCCTGCAGTTCTGTCTTGCAGAGACATTGTCTTGA
TTGAGTCTCTTCCAAAACCACTCCAGATTGTGTTAAGCTGACTTAAAATTCGCCAGGATGGCTA
CCGTTGTAGGAAATGGAGTCCCAGAATGCTGGGTTACTTGGTCAAGAGGACTTAGGCTGGAGTC
AAGAGAACCTGACACGTGACCCAATGAAACAATTATTTTTCATGTCACAGTCAGTAAGAATTAA
ACACACCAGTTTAATGTTAGTGTAAAGTTCAGTTACATTTTCATCCTTTGGGAGAGTGTCCTAT
CTCCGAATAGTATTTGTGACGAGATTAAAAAGCCAGAAAAGAAATCCAAGACCTCACACAGGGA
AAGAGGCTACCAGTCCTATAAACAGCCGGAGACTGGCAGCCACAGGGTGCGCTGTAGGGCGGAG
GTCTCGGGGGCGAGGCCCCTTAAACAGCTGGCTAACTTTGTAGTGATCTAGCCACATGCTTCCT
TGTTTCCTTGTAGATACCTGATAAAATACAGAACTCTAGAGCCTCCTAGCCACATAGCATTCCT
TACTGCCGGCTTCCGTTGATCTGAATGGGCAGATGAACTGTGGGATGTATGTTTAAGAAAACTG
GAGACAATAGGGAACTGTCTAGGAAAGACCAGGCACTTTAGGCATTGTCCAGAGAGATGCTGCC
TTCTTCCTGTCTTCACACACACTAGCCAAAGCAACCAAGCTCACCTGATGACGAAGAGGAGAAC
TGGGGAGTTTGAGGGACGGGTGGGTCGTCTCTGACCGTCTTTGCCCATTGGCTCTGTAATGTGT
TATCTGGAAGACGTTACCAAGCCATCTGGGGGATTCTCTATTTTTTACGTAAATGTTAATTTAT
TCAGGTGTGGCTTTGCGTACCTCATTACTTTGTCTTTAAGTCTGAGCCTATAAATATATCAGAA
GCTTTATTTTGCTATGCATTCATAAGAACCAAAACTTTAAAAACATTTATGTTAGATATTTCTA
ATAATTGTGATATTTTATGTTAAATTGTTACTTCAAGTCTTCAGCCTTAGGCAGTGGATGAGTT
TGTGAGAAAAGTGATTTCATTGGAATTGGACTGTGAGGAATGTATTAGGTATTTAAAACTACAG
TGGCACACGGCTCTTGTCAGCTGTGTTCACGTTGTATCTGTACTTGGCCTCGTTTTATTTTTGT
GTCTTCACCTGCTCCTTGCGGAATTCAAGTGCAGCAGGTTTTTAACAAGTGGGTCACCGCGGGG
CTTCTTAAGTTCTGCGCACGGGGTGTGAGCGTCTCATCAGCTGGGACGTCTTCTGTAGTGAGAC
TGCGGAGTCAACAGCCCGTATGGAAGTCCCCAGATTGTCAGCACAAGAGGAGTCACAGTACAGA
AAGGAGGACATGGTGAAAGAGGGGATGGTTTTAGTCTGCGGCGTGAGGCACTGTTTACATGCAG
TATAAAAGACACACACTTGTTTAAGGGACCCTGAAGACATCCTTACGGTTTGATAATTTCCCTC
TGATATTTGCTTTTACAGAATTTTATTTTCTAAAGATTTTTGGAGAAGATATTTCGATTCTAGC
AGCTATTCCTTTTGTTTGGGGACCCGGAGGAAGGGGAAGCAGGCACACATGTTGAACTATCCTG
ATGGATCACACGTGGCTGAAGTGACTCCAGCAGTTACTTCTGTCGCGGTGGGAACTGTCTCGGA
GAGCCAGTCAGTTGCGTGGATGTGGTTTCCTCTGAACAGCATTGAGAAAGCTGCTGTTTGCCTC
CCATGGGCAGACTCAGCCATTCGCCTCGTGACACTGTTTCCTGACTCCAAGGAGTGCACTGGTG
TCTGAGTCCACTCAAAACACTGTTCCCACACGACTTTCAACACAGGATCTTCCCCTCCGTGTGG
CCCCGTTTCTCCACAGTTGAGCAAGTAGGAATTGGGAAGTTTTCGGGTTAGATGGCGCCACTTG
ACGTACACAGAGCTGTGTTTGCAGTACCCCAATACTTTCCTGTCCTGTCTGTTCTCTCTGACCT
GCCACCAAAGCCGGCTCTGAGTCTTGTTAGATGATGTACTTTTTTTTTTTTTTTTTTTTTCTGG
AGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCC
CCAACCCCAATGATGATGATGTACTTAAAGTGTTTGTAAGCCATTTGTGGCAGTGCACTTGTGA
ATTTCCTAACAGGGTTTGATCTTACTTGGTGTATGTGTTTGTGGTCCTAGAGAATGCCAGTTTA
GGTGCACGTCGGTGCCCTTCTAACTAGGTTTTACAGGCTCACCATTTCCCTTGGGTGCCCACAG
CACATGGGCAGCATACGGTAGGTCTGTGTGCAACTCCTCTTTCCTCAGTCAAGATGGGAATACG
GCGCAGAGCCCAGGAGATAATAAATGCAGTTGTTTCTAGAACATGGATGGTTCAGCAGATGCTA
ACTGTTGAGCAGTAAAACTGTTAGAAAGCACCAATAATGTCAAATTATAAAATGTTGGAAAATG
TGTTCGTTTTGATCAGCTTGGCTCAGTTATTGTCCCTTAATTAAGAGAATGTGAGGGATTTGTC
TCTCACAGATAACAGGATTCTTCCTGTCGTTGATGGCTGCATGTTACTGGCCACACATGACTTT
CTGCATCTCGTTGGTTCCGACCTAGGATGTAAAAAGAAATGTGCTTAGGAAACGGCTAGGTCTA
GAATTTATTGCCTAATGAGTGAAATGACAAGTCACCCGATTTCCTGTTAGCATGGGCTTGTTCC
TGTGTGCGTCCATGCATGTTACCCCACAGGGACCCCCATCTGAATCCACTTCAGCTACTCCACC
CCAGATAGGGCCAGATGATGATCACATAGGAAGATCCATAATCATGACACCAACAATTCAGGCT
ATCGATTTATGGTTTTCAAAAATGATTTTGTAAACTTTATTGAAAGTAAAGTTTCATTGGACTT
GTGTGTCGTTTCTTATAATTTATTTTTCTTTGTAAAAGAGTCTGAAAATGTCTGAAAGTACTGT
GACTTCTGAGTTGTCAATAAAGTATAATTATTTTGCTTGCTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101597	(Get FASTA)	NCBI Sequence Viewer
	XP_006242620	(Get FASTA)	NCBI Sequence Viewer
	XP_008764161	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78430	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015383
	ENSRNOP00000015383.5

RefSeq Acc Id:

NP_001101597 ⟸ NM_001108127

- UniProtKB:

A6JND6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAPAPAEAAGCEELDMDVMRPLINEQNFDGSSDEEQEQTLLPMQKHYQLDGQHGISFVQTLMH
LLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDT
VSFAMEASPWSCLQRQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGLLETTVVVSNS
SDLSQVCERRSVDLRVYMLCFLPLLILLVFIRELKSLFVLSFLANISMAASLVIIYQYVVRSMP
DPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLAT
LGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQFYVPAEIIIPAVTARLHAKWK
CICDFGIRSLLVSITCAGAVLIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKDHYNVWMVL
KNISIAFTGFVGFLLGTYVTVEEIIYPTTAVADGASQSLSLNVNSTCVSSGL

hide sequence

RefSeq Acc Id:	XP_006242620 ⟸ XM_006242558
- Peptide Label:	isoform X1
- UniProtKB:	D3ZMH7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAPAPAEAAGCEELDMDVMRPLINEQNFDGSSDEEQEQTLLPMQKHYQLDGQHGISFVQTLMH LLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDT VSFAMEASPWSCLQRQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGLLETTVVVSNS SDLSQVCERRSVDLRVYMLCFLPLLILLVFIRELKSLFVLSFLANISMAASLVIIYQYVVRSMP DPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLAT LGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQFYVPAEIIIPAVTARLHAKWK CICDFGIRSLLVLARFSFPAWTL hide sequence

RefSeq Acc Id:

XP_008764161 ⟸ XM_008765939

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEASPWSCLQRQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGLLETTVVVSNSSDLS
QVCERRSVDLRVYMLCFLPLLILLVFIRELKSLFVLSFLANISMAASLVIIYQYVVRSMPDPHN
LPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLATLGYM
CFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTYSIQFYVPAEIIIPAVTARLHAKWKCICD
FGIRSLLVSITCAGAVLIPRLDIVISFVGAVSSSTLALILPPLVEILTFSKDHYNVWMVLKNIS
IAFTGFVGFLLGTYVTVEEIIYPTTAVADGASQSLSLNVNSTCVSSGL

hide sequence

Ensembl Acc Id:

ENSRNOP00000015383 ⟸ ENSRNOT00000015383

Protein Domains

Amino acid transporter transmembrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMH7-F1-model_v2	AlphaFold	D3ZMH7	1-500	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695756

Promoter ID:

EPDNEW_R6280

Type:

initiation region

Name:

Slc36a4_1

Description:

solute carrier family 36 member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	14,239,584 - 14,239,644	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311528	AgrOrtholog
BioCyc Gene	G2FUF-31626	BioCyc
Ensembl Genes	ENSRNOG00000011455	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015383	ENTREZGENE
	ENSRNOT00000015383.7	UniProtKB/TrEMBL
InterPro	AA_transpt_TM	UniProtKB/TrEMBL
KEGG Report	rno:315439	UniProtKB/TrEMBL
NCBI Gene	315439	ENTREZGENE
PANTHER	AMINO ACID TRANSPORTER	UniProtKB/TrEMBL
	PROTON-COUPLED AMINO ACID TRANSPORTER 4	UniProtKB/TrEMBL
Pfam	Aa_trans	UniProtKB/TrEMBL
PhenoGen	Slc36a4	PhenoGen
RatGTEx	ENSRNOG00000011455	RatGTEx
UniProt	A6JND6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMH7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc36a4	solute carrier family 36 member 4	Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc36a4	solute carrier family 36 (proton/amino acid symporter), member 4	Slc36a4_predicted	solute carrier family 36 (proton/amino acid symporter), member 4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc36a4_predicted	solute carrier family 36 (proton/amino acid symporter), member 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

RGD Manual Annotations