Nup93 (nucleoporin 93) - Rat Genome Database

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Gene: Nup93 (nucleoporin 93) Rattus norvegicus
Analyze
Symbol: Nup93
Name: nucleoporin 93
RGD ID: 1311525
Description: Predicted to be a structural constituent of nuclear pore. Predicted to be involved in nucleocytoplasmic transport; nucleus organization; and positive regulation of SMAD protein signal transduction. Located in nuclear envelope. Human ortholog(s) of this gene implicated in nephrotic syndrome type 12. Orthologous to human NUP93 (nucleoporin 93); PARTICIPATES IN RNA transport pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 93 kDa nucleoporin; LOC291874; nuclear pore complex protein Nup93; nucleoporin 93kDa; nucleoporin Nup93
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,690,154 - 10,793,937 (-)NCBIGRCr8
mRatBN7.21910,684,214 - 10,788,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,682,075 - 10,788,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,647,235 - 10,750,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,414,073 - 11,517,597 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,701,063 - 10,804,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,159,769 - 11,263,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,159,774 - 11,263,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,137,500 - 11,238,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,124,681 - 11,223,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,129,511 - 11,228,696 (-)NCBI
Celera1910,571,493 - 10,674,188 (-)NCBICelera
Cytogenetic Map19p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cordycepin  (ISO)
coumarin  (ISO)
Cuprizon  (EXP,ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
fenamidone  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
methidathion  (ISO)
methimazole  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA,ISO)
nuclear envelope  (IDA,ISO)
nuclear membrane  (IEA,ISO,ISS)
nuclear periphery  (IEA,ISO,ISS)
nuclear pore  (IBA,IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mutations in nuclear pore genes NUP93, NUP205 and XPO5 cause steroid-resistant nephrotic syndrome. Braun DA, etal., Nat Genet. 2016 Apr;48(4):457-65. doi: 10.1038/ng.3512. Epub 2016 Feb 15.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9348540   PMID:12477932   PMID:12802065   PMID:15229283   PMID:19946888   PMID:22082260   PMID:23106098   PMID:36807413  


Genomics

Comparative Map Data
Nup93
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,690,154 - 10,793,937 (-)NCBIGRCr8
mRatBN7.21910,684,214 - 10,788,009 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,682,075 - 10,788,026 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,647,235 - 10,750,757 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,414,073 - 11,517,597 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,701,063 - 10,804,589 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,159,769 - 11,263,980 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,159,774 - 11,263,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,137,500 - 11,238,898 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,124,681 - 11,223,870 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,129,511 - 11,228,696 (-)NCBI
Celera1910,571,493 - 10,674,188 (-)NCBICelera
Cytogenetic Map19p12NCBI
NUP93
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,730,129 - 56,850,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,730,118 - 56,850,286 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,764,041 - 56,884,198 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,321,608 - 55,436,178 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,321,607 - 55,436,177NCBI
Celera1641,261,349 - 41,377,957 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,633,146 - 42,748,366 (+)NCBIHuRef
CHM1_11658,170,944 - 58,286,883 (+)NCBICHM1_1
T2T-CHM13v2.01662,525,082 - 62,646,588 (+)NCBIT2T-CHM13v2.0
Nup93
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39894,941,203 - 95,043,858 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl894,941,192 - 95,043,855 (+)EnsemblGRCm39 Ensembl
GRCm38894,214,564 - 94,328,100 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,214,564 - 94,317,227 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,738,501 - 96,838,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,103,730 - 97,204,195 (+)NCBIMGSCv36mm8
Celera898,546,731 - 98,646,788 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.4NCBI
Nup93
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,407,962 - 14,535,500 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,408,079 - 14,533,292 (+)NCBIChiLan1.0ChiLan1.0
NUP93
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,203,555 - 66,316,812 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,121,827 - 72,237,502 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,007,481 - 37,122,785 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,140,546 - 56,255,561 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,140,546 - 56,255,561 (+)Ensemblpanpan1.1panPan2
NUP93
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,465,482 - 59,573,871 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,465,487 - 59,574,033 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,094,117 - 56,202,511 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0260,004,861 - 60,113,330 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl260,004,865 - 60,142,347 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,835,743 - 56,944,123 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,842,840 - 57,952,923 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,737,314 - 58,846,012 (-)NCBIUU_Cfam_GSD_1.0
Nup93
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,561,224 - 50,658,755 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364758,930,314 - 9,032,287 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364758,930,320 - 9,027,840 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP93
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,711,911 - 18,827,887 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,711,869 - 18,827,705 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUP93
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,679,764 - 42,794,103 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,679,781 - 42,794,097 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,555,134 - 33,667,985 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup93
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474629,153,503 - 29,253,146 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474629,153,503 - 29,271,518 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup93
714 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:288
Count of miRNA genes:200
Interacting mature miRNAs:233
Transcripts:ENSRNOT00000025086
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat

Markers in Region
D19Rat36  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,789,780 - 10,789,999 (+)MAPPERmRatBN7.2
Rnor_6.01911,265,752 - 11,265,970NCBIRnor6.0
Rnor_5.01911,240,670 - 11,240,888UniSTSRnor5.0
RGSC_v3.41911,225,642 - 11,225,860UniSTSRGSC3.4
RGSC_v3.41911,225,641 - 11,225,860RGDRGSC3.4
RGSC_v3.11911,230,468 - 11,230,686RGD
Celera1910,675,960 - 10,676,178UniSTS
RH 3.4 Map19106.19RGD
RH 3.4 Map19106.19UniSTS
SHRSP x BN Map196.8199RGD
SHRSP x BN Map196.8199UniSTS
Cytogenetic Map19p12UniSTS
D19Got102  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,788,946 - 10,789,070 (+)MAPPERmRatBN7.2
Rnor_6.01911,264,918 - 11,265,041NCBIRnor6.0
Rnor_5.01911,239,836 - 11,239,959UniSTSRnor5.0
RGSC_v3.41911,224,808 - 11,224,931UniSTSRGSC3.4
Celera1910,675,126 - 10,675,249UniSTS
Cytogenetic Map19p12UniSTS
RH141887  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,788,194 - 10,788,374 (+)MAPPERmRatBN7.2
Rnor_6.01911,264,166 - 11,264,345NCBIRnor6.0
Rnor_5.01911,239,084 - 11,239,263UniSTSRnor5.0
RGSC_v3.41911,224,056 - 11,224,235UniSTSRGSC3.4
Celera1910,674,374 - 10,674,553UniSTS
RH 3.4 Map19111.3UniSTS
Cytogenetic Map19p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000025086   ⟹   ENSRNOP00000025086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,684,217 - 10,788,026 (-)Ensembl
Rnor_6.0 Ensembl1911,159,774 - 11,263,980 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096162   ⟹   ENSRNOP00000083330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,684,217 - 10,788,026 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108218   ⟹   ENSRNOP00000094077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,684,217 - 10,769,121 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116116   ⟹   ENSRNOP00000077823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,682,075 - 10,788,011 (-)Ensembl
RefSeq Acc Id: NM_001011925   ⟹   NP_001011925
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,690,154 - 10,793,937 (-)NCBI
mRatBN7.21910,684,214 - 10,788,009 (-)NCBI
Rnor_6.01911,159,769 - 11,263,980 (-)NCBI
Rnor_5.01911,137,500 - 11,238,898 (-)NCBI
RGSC_v3.41911,124,681 - 11,223,870 (-)RGD
Celera1910,571,493 - 10,674,188 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772282   ⟹   XP_008770504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,690,154 - 10,738,126 (-)NCBI
mRatBN7.21910,684,214 - 10,732,176 (-)NCBI
Rnor_6.01911,159,769 - 11,210,239 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063277858   ⟹   XP_063133928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,690,154 - 10,789,252 (-)NCBI
RefSeq Acc Id: NP_001011925   ⟸   NM_001011925
- UniProtKB: Q66HC5 (UniProtKB/Swiss-Prot),   A6JY70 (UniProtKB/TrEMBL),   A6JY69 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770504   ⟸   XM_008772282
- Peptide Label: isoform X2
- UniProtKB: A0A8I5YC20 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000025086   ⟸   ENSRNOT00000025086
Ensembl Acc Id: ENSRNOP00000083330   ⟸   ENSRNOT00000096162
Ensembl Acc Id: ENSRNOP00000094077   ⟸   ENSRNOT00000108218
Ensembl Acc Id: ENSRNOP00000077823   ⟸   ENSRNOT00000116116
RefSeq Acc Id: XP_063133928   ⟸   XM_063277858
- Peptide Label: isoform X1
- UniProtKB: Q66HC5 (UniProtKB/Swiss-Prot),   A6JY70 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HC5-F1-model_v2 AlphaFold Q66HC5 1-819 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700948
Promoter ID:EPDNEW_R11472
Type:initiation region
Name:Nup93_1
Description:nucleoporin 93
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01911,263,982 - 11,264,042EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311525 AgrOrtholog
BioCyc Gene G2FUF-6478 BioCyc
Ensembl Genes ENSRNOG00000018564 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025086.7 UniProtKB/Swiss-Prot
  ENSRNOT00000096162.1 UniProtKB/TrEMBL
  ENSRNOT00000108218.1 UniProtKB/TrEMBL
  ENSRNOT00000116116.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113037 IMAGE-MGC_LOAD
InterPro Nucleoporin_int_Nup93/Nic96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291874 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93917 IMAGE-MGC_LOAD
NCBI Gene 291874 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP93 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nic96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nup93 PhenoGen
RatGTEx ENSRNOG00000018564 RatGTEx
UniProt A0A8I5YC20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZ34_RAT UniProtKB/TrEMBL
  A0A8I6AH00_RAT UniProtKB/TrEMBL
  A6JY69 ENTREZGENE, UniProtKB/TrEMBL
  A6JY70 ENTREZGENE, UniProtKB/TrEMBL
  NUP93_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-10-22 Nup93  nucleoporin 93  Nup93  nucleoporin 93kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Nup93  nucleoporin 93kDa  Nup93  nucleoporin 93  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Nup93  nucleoporin 93  Nup93_predicted  nucleoporin 93 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Nup93_predicted  nucleoporin 93 (predicted)      Symbol and Name status set to approved 70820 APPROVED