Pkd2l1 (polycystin 2 like 1, transient receptor potential cation channel) - Rat Genome Database

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Gene: Pkd2l1 (polycystin 2 like 1, transient receptor potential cation channel) Ictidomys tridecemlineatus
Analyze
Symbol: Pkd2l1
Name: polycystin 2 like 1, transient receptor potential cation channel
RGD ID: 13114648
Description: ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium channel activity (ortholog); calcium ion binding (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to pH (ortholog); detection of chemical stimulus involved in sensory perception of sour taste (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN actin cytoskeleton (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110597449
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,959,016 - 33,960,778 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004944487205 - 1,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pkd2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721333,959,016 - 33,960,778 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004944487205 - 1,593 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810100,288,149 - 100,330,228 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10100,288,149 - 100,330,264 (-)EnsemblGRCh38hg38GRCh38
GRCh3710102,047,906 - 102,089,985 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3610102,037,893 - 102,080,233 (-)NCBINCBI36Build 36hg18NCBI36
Build 3410102,037,892 - 102,080,233NCBI
Celera1095,785,781 - 95,828,122 (-)NCBICelera
Cytogenetic Map10q24.31NCBI
HuRef1095,676,807 - 95,719,121 (-)NCBIHuRef
CHM1_110102,332,503 - 102,374,685 (-)NCBICHM1_1
T2T-CHM13v2.010101,172,443 - 101,214,450 (-)NCBIT2T-CHM13v2.0
Pkd2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391944,136,076 - 44,235,355 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1944,136,076 - 44,180,881 (-)EnsemblGRCm39 Ensembl
GRCm381944,147,637 - 44,248,328 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1944,147,637 - 44,192,442 (-)EnsemblGRCm38mm10GRCm38
MGSCv371944,222,127 - 44,266,932 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361944,200,948 - 44,245,719 (-)NCBIMGSCv36mm8
Celera1944,933,088 - 44,971,513 (-)NCBICelera
Cytogenetic Map19C3NCBI
cM Map1936.91NCBI
Pkd2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81252,982,096 - 253,019,235 (-)NCBIGRCr8
mRatBN7.21243,032,891 - 243,070,031 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1243,032,913 - 243,070,031 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1251,182,946 - 251,220,300 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01257,879,666 - 257,916,994 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01250,533,109 - 250,570,461 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01263,922,201 - 263,959,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1263,922,201 - 263,959,318 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01271,367,373 - 271,404,490 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41249,047,374 - 249,084,997 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11249,083,071 - 249,342,077 (+)NCBI
Celera1238,850,066 - 238,887,164 (-)NCBICelera
Cytogenetic Map1q54NCBI
Pkd2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555076,146,825 - 6,166,976 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555076,145,981 - 6,167,152 (-)NCBIChiLan1.0ChiLan1.0
PKD2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,172,821 - 112,215,281 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,178,140 - 112,220,600 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01096,889,228 - 96,932,177 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110100,370,083 - 100,412,366 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10100,370,083 - 100,412,366 (-)Ensemblpanpan1.1panPan2
PKD2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12813,045,749 - 13,076,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2813,045,829 - 13,076,485 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2813,228,826 - 13,259,097 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02813,514,442 - 13,544,711 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2813,514,692 - 13,544,618 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12813,061,160 - 13,091,425 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02813,099,244 - 13,129,512 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02813,233,508 - 13,263,795 (-)NCBIUU_Cfam_GSD_1.0
PKD2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14111,399,071 - 111,460,995 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114111,398,704 - 111,434,584 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214120,901,637 - 120,937,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PKD2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1993,319,408 - 93,363,389 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604854,321,567 - 54,368,696 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pkd2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473712,102,976 - 12,137,737 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473712,097,134 - 12,137,574 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040272587   ⟹   XP_040128521
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721333,959,016 - 33,960,778 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040128521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3264285 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040128521   ⟸   XM_040272587


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC110597449 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Pkd2l1  polycystin 2 like 1, transient receptor potential cation channel  LOC110597449  polycystic kidney disease 2-like 1 protein  Symbol and/or name change 5135510 APPROVED