Orc6 (origin recognition complex, subunit 6) - Rat Genome Database

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Gene: Orc6 (origin recognition complex, subunit 6) Rattus norvegicus
Analyze
Symbol: Orc6
Name: origin recognition complex, subunit 6
RGD ID: 1311437
Description: Predicted to enable DNA binding activity. Predicted to be involved in DNA replication initiation. Predicted to act upstream of or within DNA-templated DNA replication. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be part of nuclear origin of replication recognition complex. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 3. Orthologous to human ORC6 (origin recognition complex subunit 6); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC291927; MGC124771; Orc6l; origin recognition complex subunit 6; origin recognition complex, subunit 6 like; origin recognition complex, subunit 6 like (yeast); origin recognition complex, subunit 6-like; origin recognition complex, subunit 6-like (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,931,085 - 37,938,856 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1937,931,090 - 37,938,856 (-)EnsemblGRCr8
mRatBN7.21921,757,867 - 21,765,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,757,866 - 21,765,662 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1923,447,950 - 23,455,719 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01928,642,468 - 28,650,237 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01931,605,298 - 31,613,067 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01927,457,541 - 27,464,804 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1927,457,474 - 27,464,805 (-)Ensemblrn6Rnor6.0
Rnor_5.01938,423,332 - 38,433,657 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41923,116,888 - 23,124,657 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1921,617,556 - 21,625,313 (-)NCBICelera
RGSC_v3.11923,121,727 - 23,129,483 (-)NCBI
Cytogenetic Map19q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-dichlorobenzene  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2'-Methylenebis(4-methyl-6-tert-butylphenol)  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-butoxyethanol  (ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Bufotalin  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) chloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
GW 3965  (ISO)
GW 4064  (ISO)
indometacin  (ISO)
leflunomide  (ISO)
lucanthone  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
picoxystrobin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
piroxicam  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
silver(1+) nitrate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene 2,4-diisocyanate  (ISO)
topotecan  (EXP)
Tributyltin oxide  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17716973   PMID:19946888   PMID:20219456   PMID:22581055  


Genomics

Comparative Map Data
Orc6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,931,085 - 37,938,856 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1937,931,090 - 37,938,856 (-)EnsemblGRCr8
mRatBN7.21921,757,867 - 21,765,638 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,757,866 - 21,765,662 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1923,447,950 - 23,455,719 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01928,642,468 - 28,650,237 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01931,605,298 - 31,613,067 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01927,457,541 - 27,464,804 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1927,457,474 - 27,464,805 (-)Ensemblrn6Rnor6.0
Rnor_5.01938,423,332 - 38,433,657 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41923,116,888 - 23,124,657 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1921,617,556 - 21,625,313 (-)NCBICelera
RGSC_v3.11923,121,727 - 23,129,483 (-)NCBI
Cytogenetic Map19q11NCBI
ORC6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381646,689,659 - 46,698,394 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1646,689,643 - 46,698,394 (+)Ensemblhg38GRCh38
GRCh371646,723,571 - 46,732,306 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,281,059 - 45,289,807 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341645,281,058 - 45,289,806NCBI
Celera1631,231,720 - 31,240,492 (+)NCBICelera
Cytogenetic Map16q11.2NCBI
HuRef1632,612,322 - 32,621,763 (+)NCBIHuRef
CHM1_11648,130,515 - 48,139,265 (+)NCBICHM1_1
T2T-CHM13v2.01652,486,533 - 52,495,295 (+)NCBIT2T-CHM13v2.0
Orc6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39886,026,261 - 86,034,908 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl886,026,261 - 86,034,907 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38885,299,632 - 85,308,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,299,632 - 85,308,278 (+)Ensemblmm10GRCm38
MGSCv37887,823,531 - 87,832,178 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36888,189,896 - 88,198,175 (+)NCBIMGSCv36mm8
Celera889,580,585 - 89,589,227 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
Orc6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448240,697 - 247,986 (+)Ensembl
ChiLan1.0NW_004955448240,518 - 248,379 (+)NCBIChiLan1.0ChiLan1.0
ORC6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,148,490 - 56,156,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,053,665 - 62,061,877 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01626,954,596 - 26,962,780 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11645,846,673 - 45,854,836 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1645,846,747 - 45,854,836 (+)EnsemblpanPan2panpan1.1
ORC6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,421,297 - 8,427,972 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,421,318 - 8,427,821 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha158,575,118 - 8,581,773 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0158,537,624 - 8,544,281 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,537,645 - 8,544,532 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,366,678 - 8,373,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,447,340 - 8,454,004 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,463,140 - 8,469,806 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Orc6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934959,493,983 - 59,511,169 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647578,217 - 85,517 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647578,234 - 85,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ORC6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl637,934,908 - 37,943,886 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1637,934,903 - 37,943,950 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ORC6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1532,538,451 - 32,547,667 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl532,539,847 - 32,547,778 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604744,055,645 - 44,064,261 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Orc6
19 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000039467
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat

Markers in Region
RH134118  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21921,757,958 - 21,758,142 (+)MAPPERmRatBN7.2
Rnor_6.01927,457,636 - 27,457,819NCBIRnor6.0
Rnor_5.01938,423,432 - 38,423,615UniSTSRnor5.0
RGSC_v3.41923,116,980 - 23,117,163UniSTSRGSC3.4
Celera1921,617,648 - 21,617,831UniSTS
Cytogenetic Map19q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 89 59 6 353 189 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000039467   ⟹   ENSRNOP00000035958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1937,931,090 - 37,938,856 (-)Ensembl
mRatBN7.2 Ensembl1921,757,866 - 21,765,662 (-)Ensembl
Rnor_6.0 Ensembl1927,457,474 - 27,464,805 (-)Ensembl
RefSeq Acc Id: NM_001033690   ⟹   NP_001028862
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81937,931,085 - 37,938,856 (-)NCBI
mRatBN7.21921,757,867 - 21,765,638 (-)NCBI
Rnor_6.01927,457,544 - 27,464,804 (-)NCBI
Rnor_5.01938,423,332 - 38,433,657 (-)NCBI
RGSC_v3.41923,116,888 - 23,124,657 (-)RGD
Celera1921,617,556 - 21,625,313 (-)RGD
Sequence:
RefSeq Acc Id: XM_063277872   ⟹   XP_063133942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81937,931,085 - 37,938,644 (-)NCBI
RefSeq Acc Id: XM_063277873   ⟹   XP_063133943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81937,931,085 - 37,938,639 (-)NCBI
RefSeq Acc Id: NP_001028862   ⟸   NM_001033690
- UniProtKB: Q3T1K3 (UniProtKB/TrEMBL),   F7FAH8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000035958   ⟸   ENSRNOT00000039467
RefSeq Acc Id: XP_063133942   ⟸   XM_063277872
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133943   ⟸   XM_063277873
- Peptide Label: isoform X2
- UniProtKB: A6KDE7 (UniProtKB/TrEMBL)
Protein Domains
ORC6 first cyclin-like   ORC6 second cyclin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3T1K3-F1-model_v2 AlphaFold Q3T1K3 1-262 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701044
Promoter ID:EPDNEW_R11567
Type:multiple initiation site
Name:Orc6_2
Description:origin recognition complex, subunit 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11568  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01927,464,541 - 27,464,601EPDNEW
RGD ID:13701045
Promoter ID:EPDNEW_R11568
Type:single initiation site
Name:Orc6_1
Description:origin recognition complex, subunit 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11567  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01927,464,795 - 27,464,855EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311437 AgrOrtholog
BioCyc Gene G2FUF-6201 BioCyc
Ensembl Genes ENSRNOG00000024043 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039467 ENTREZGENE
  ENSRNOT00000039467.6 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5621693 IMAGE-MGC_LOAD
InterPro ORC6 UniProtKB/TrEMBL
  ORC6_cyclin-like_2nd UniProtKB/TrEMBL
  ORC6_met/pln UniProtKB/TrEMBL
KEGG Report rno:291927 UniProtKB/TrEMBL
MGC_CLONE MGC:124771 IMAGE-MGC_LOAD
NCBI Gene 291927 ENTREZGENE
PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 6 UniProtKB/TrEMBL
  PTHR13394 UniProtKB/TrEMBL
Pfam ORC6 UniProtKB/TrEMBL
  ORC6_2nd UniProtKB/TrEMBL
PhenoGen Orc6 PhenoGen
RatGTEx ENSRNOG00000024043 RatGTEx
UniProt A6KDE7 ENTREZGENE, UniProtKB/TrEMBL
  F7FAH8 ENTREZGENE, UniProtKB/TrEMBL
  Q3T1K3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-02 Orc6  origin recognition complex, subunit 6  Orc6l  origin recognition complex, subunit 6 like (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Orc6l  origin recognition complex, subunit 6 like (yeast)  Orc6l  origin recognition complex, subunit 6-like (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Orc6l  origin recognition complex, subunit 6-like (S. cerevisiae)  Orc6l_predicted  origin recognition complex, subunit 6-like (S. cerevisiae) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Orc6l_predicted  origin recognition complex, subunit 6-like (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED