Ptpn3 (protein tyrosine phosphatase, non-receptor type 3) - Rat Genome Database

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Gene: Ptpn3 (protein tyrosine phosphatase, non-receptor type 3) Rattus norvegicus
Analyze
Symbol: Ptpn3
Name: protein tyrosine phosphatase, non-receptor type 3
RGD ID: 1311363
Description: Predicted to have several functions, including ATPase binding activity; phosphotyrosine residue binding activity; and sodium channel regulator activity. Involved in liver regeneration. Predicted to localize to cytoplasm and cytoplasmic side of plasma membrane. Orthologous to human PTPN3 (protein tyrosine phosphatase non-receptor type 3); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC362524; tyrosine-protein phosphatase non-receptor type 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2571,908,520 - 72,027,323 (-)NCBI
Rnor_6.0 Ensembl574,248,996 - 74,368,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0574,248,996 - 74,368,167 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0578,399,259 - 78,528,991 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4575,106,880 - 75,222,735 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1575,111,995 - 75,139,197 (-)NCBI
Celera570,758,167 - 70,876,826 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
belinostat  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
calyculin a  (ISO)
carmustine  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
clothianidin  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
finasteride  (EXP)
folic acid  (ISO)
glafenine  (EXP)
indometacin  (EXP)
L-methionine  (ISO)
lapatinib  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N(6)-dimethylallyladenine  (ISO)
N-nitrosodiethylamine  (EXP)
paracetamol  (ISO)
PCB138  (ISO)
phenformin  (EXP)
phenobarbital  (ISO)
pirfenidone  (ISO)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tetrachloromethane  (ISO)
toluene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (EXP)
valproic acid  (ISO)
vincristine  (ISO)

References

Additional References at PubMed
PMID:10364224   PMID:10940933   PMID:12207026   PMID:16930557   PMID:19167335  


Genomics

Comparative Map Data
Ptpn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2571,908,520 - 72,027,323 (-)NCBI
Rnor_6.0 Ensembl574,248,996 - 74,368,186 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0574,248,996 - 74,368,167 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0578,399,259 - 78,528,991 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4575,106,880 - 75,222,735 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1575,111,995 - 75,139,197 (-)NCBI
Celera570,758,167 - 70,876,826 (-)NCBICelera
Cytogenetic Map5q24NCBI
PTPN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9109,375,466 - 109,498,313 (-)EnsemblGRCh38hg38GRCh38
GRCh389109,375,694 - 109,538,395 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh379112,137,974 - 112,260,587 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369111,180,337 - 111,265,557 (-)NCBINCBI36hg18NCBI36
Build 349109,220,072 - 109,305,289NCBI
Celera982,637,279 - 82,759,899 (-)NCBI
Cytogenetic Map9q31.3NCBI
HuRef981,738,137 - 81,860,645 (-)NCBIHuRef
CHM1_19112,284,708 - 112,407,241 (-)NCBICHM1_1
Ptpn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39457,190,841 - 57,339,036 (-)NCBIGRCm39mm39
GRCm39 Ensembl457,190,841 - 57,301,837 (-)Ensembl
GRCm38457,190,841 - 57,339,040 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl457,190,841 - 57,301,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv37457,203,713 - 57,314,709 (-)NCBIGRCm37mm9NCBIm37
MGSCv36457,284,895 - 57,394,944 (-)NCBImm8
Celera457,101,096 - 57,212,390 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map431.66NCBI
Ptpn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541917,493,518 - 17,645,477 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541917,560,664 - 17,645,420 (+)NCBIChiLan1.0ChiLan1.0
PTPN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19108,699,761 - 108,787,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9108,699,761 - 108,787,464 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0980,528,896 - 80,651,629 (-)NCBIMhudiblu_PPA_v0panPan3
PTPN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11164,486,293 - 64,595,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1164,489,446 - 64,630,004 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1162,886,334 - 63,029,951 (-)NCBI
ROS_Cfam_1.01165,619,500 - 65,763,908 (-)NCBI
UMICH_Zoey_3.11164,139,495 - 64,283,404 (-)NCBI
UNSW_CanFamBas_1.01164,160,914 - 64,305,281 (-)NCBI
UU_Cfam_GSD_1.01164,851,489 - 64,995,173 (-)NCBI
Ptpn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947179,719,264 - 179,830,375 (-)NCBI
SpeTri2.0NW_0049365593,436,114 - 3,547,316 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1250,418,132 - 250,583,281 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11250,418,131 - 250,583,148 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PTPN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11230,048,941 - 30,168,816 (+)NCBI
ChlSab1.1 Ensembl1230,083,128 - 30,171,473 (+)Ensembl
Vero_WHO_p1.0NW_02366603512,548,993 - 12,668,966 (-)NCBI
Ptpn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247582,011,998 - 2,170,096 (+)NCBI

Position Markers
D5Mit17  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,963,533 - 71,963,668 (+)MAPPER
Rnor_6.0574,304,359 - 74,304,493NCBIRnor6.0
Rnor_5.0578,454,425 - 78,454,559UniSTSRnor5.0
RGSC_v3.4575,159,411 - 75,159,546RGDRGSC3.4
RGSC_v3.4575,159,412 - 75,159,546UniSTSRGSC3.4
RGSC_v3.1575,164,525 - 75,164,659RGD
Celera570,813,108 - 70,813,242UniSTS
RH 3.4 Map5487.8UniSTS
RH 3.4 Map5487.8RGD
RH 2.0 Map5371.2RGD
Cytogenetic Map5q24UniSTS
D5Rat182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,963,532 - 71,963,722 (+)MAPPER
Rnor_6.0574,304,358 - 74,304,547NCBIRnor6.0
Rnor_5.0578,454,424 - 78,454,613UniSTSRnor5.0
RGSC_v3.4575,159,410 - 75,159,600RGDRGSC3.4
RGSC_v3.4575,159,411 - 75,159,600UniSTSRGSC3.4
RGSC_v3.1575,164,413 - 75,164,721RGD
Celera570,813,107 - 70,813,296UniSTS
FHH x ACI Map536.89RGD
FHH x ACI Map536.89UniSTS
Cytogenetic Map5q24UniSTS
RH141861  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,908,518 - 71,908,725 (+)MAPPER
Rnor_6.0574,248,995 - 74,249,201NCBIRnor6.0
Rnor_5.0578,399,258 - 78,399,464UniSTSRnor5.0
RGSC_v3.4575,104,609 - 75,104,815UniSTSRGSC3.4
Celera570,758,166 - 70,758,372UniSTS
RH 3.4 Map5483.5UniSTS
Cytogenetic Map5q24UniSTS
RH132655  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,960,402 - 71,960,593 (+)MAPPER
Rnor_6.0574,301,229 - 74,301,419NCBIRnor6.0
Rnor_5.0578,451,295 - 78,451,485UniSTSRnor5.0
RGSC_v3.4575,156,347 - 75,156,537UniSTSRGSC3.4
Celera570,810,035 - 70,810,225UniSTS
RH 3.4 Map5484.6UniSTS
Cytogenetic Map5q24UniSTS
AI555271  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,911,367 - 71,911,552 (+)MAPPER
Rnor_6.0574,251,844 - 74,252,028NCBIRnor6.0
Rnor_5.0578,402,107 - 78,402,291UniSTSRnor5.0
RGSC_v3.4575,107,458 - 75,107,642UniSTSRGSC3.4
Celera570,761,015 - 70,761,199UniSTS
RH 3.4 Map5486.1UniSTS
Cytogenetic Map5q24UniSTS
AU049242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2571,963,570 - 71,963,711 (+)MAPPER
Rnor_6.0574,304,396 - 74,304,536NCBIRnor6.0
Rnor_5.0578,454,462 - 78,454,602UniSTSRnor5.0
RGSC_v3.4575,159,449 - 75,159,589UniSTSRGSC3.4
Celera570,813,145 - 70,813,285UniSTS
Cytogenetic Map5q24UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5189432042Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5193273395Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5152509878720537Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)59514842103580403Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512651967117554267Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51884791376608178Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52964166174641661Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52964166174641661Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531926122136640934Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53440240979402409Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53440240979402409Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53440240979402409Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)535225432108092802Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)535661945117554267Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535788756147487820Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54440427689432042Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)544404276134502294Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54872203893587756Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)551418671147487820Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)55180442696804426Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)55180442696804426Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55330956898309568Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)555903593100903593Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)556902367101902367Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)556991667137729065Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)560072951133313852Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)561086525149030144Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56108665393273130Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)561086653117554114Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)561612600102331727Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)565696672129038896Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)568838385113838385Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)571154828108092802Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)571154828108092802Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)571154828108092802Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)571154828108092802Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)571154828108092802Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)571552569157225114Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:559
Count of miRNA genes:254
Interacting mature miRNAs:298
Transcripts:ENSRNOT00000059627
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 29 18 13 13 8 10 19 31 3 7 8
Low 2 14 35 24 19 24 1 55 4 38 4
Below cutoff 4 4 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001055793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001059757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC092605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC103629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059627   ⟹   ENSRNOP00000056382
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl574,250,453 - 74,368,186 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076106   ⟹   ENSRNOP00000068051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl574,248,996 - 74,367,267 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076705   ⟹   ENSRNOP00000068252
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl574,252,602 - 74,366,817 (-)Ensembl
RefSeq Acc Id: XM_001055793   ⟹   XP_001055793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,758,167 - 70,876,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_001059757   ⟹   XP_001059757
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,908,520 - 72,026,608 (-)NCBI
Rnor_6.0574,248,996 - 74,367,571 (-)NCBI
Rnor_5.0578,399,259 - 78,528,991 (-)NCBI
RGSC_v3.4575,106,880 - 75,222,735 (-)RGD
Sequence:
RefSeq Acc Id: XM_006225308   ⟹   XP_006225370
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,760,440 - 70,875,520 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006238192   ⟹   XP_006238254
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,910,793 - 72,026,110 (-)NCBI
Rnor_6.0574,251,269 - 74,366,861 (-)NCBI
Rnor_5.0578,399,259 - 78,528,991 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763738   ⟹   XP_008761960
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0574,251,269 - 74,367,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763739   ⟹   XP_008761961
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0574,251,269 - 74,366,862 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008763740   ⟹   XP_008761962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,910,793 - 71,970,317 (-)NCBI
Rnor_6.0574,251,269 - 74,311,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008775961   ⟹   XP_008774183
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,760,440 - 70,876,230 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008775962   ⟹   XP_008774184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,760,440 - 70,875,521 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008775963   ⟹   XP_008774185
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,760,440 - 70,820,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593736   ⟹   XP_017449225
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,910,793 - 72,027,323 (-)NCBI
Rnor_6.0574,251,269 - 74,368,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017603009   ⟹   XP_017458498
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera570,760,440 - 70,876,826 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039111038   ⟹   XP_038966966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,910,793 - 72,005,372 (-)NCBI
RefSeq Acc Id: XR_005504780
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2571,908,520 - 72,026,608 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_001055793   ⟸   XM_001055793
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_001059757   ⟸   XM_001059757
- Peptide Label: isoform X1
- UniProtKB: F1LQQ5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006225370   ⟸   XM_006225308
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006238254   ⟸   XM_006238192
- Peptide Label: isoform X2
- UniProtKB: A0A096MJT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008774183   ⟸   XM_008775961
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008774184   ⟸   XM_008775962
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008774185   ⟸   XM_008775963
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008761960   ⟸   XM_008763738
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008761961   ⟸   XM_008763739
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008761962   ⟸   XM_008763740
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017458498   ⟸   XM_017603009
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017449225   ⟸   XM_017593736
- Peptide Label: isoform X2
- UniProtKB: A0A096MJT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000056382   ⟸   ENSRNOT00000059627
RefSeq Acc Id: ENSRNOP00000068051   ⟸   ENSRNOT00000076106
RefSeq Acc Id: ENSRNOP00000068252   ⟸   ENSRNOT00000076705
RefSeq Acc Id: XP_038966966   ⟸   XM_039111038
- Peptide Label: isoform X2
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693759
Promoter ID:EPDNEW_R4282
Type:multiple initiation site
Name:Ptpn3_1
Description:protein tyrosine phosphatase, non-receptor type 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4283  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0574,366,841 - 74,366,901EPDNEW
RGD ID:13693760
Promoter ID:EPDNEW_R4283
Type:initiation region
Name:Ptpn3_2
Description:protein tyrosine phosphatase, non-receptor type 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4282  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0574,367,253 - 74,367,313EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
5 75150710 75150711 T A snv SS/JrHsdMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311363 AgrOrtholog
Ensembl Genes ENSRNOG00000011425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056382 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068051 UniProtKB/TrEMBL
  ENSRNOP00000068252 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059627 UniProtKB/TrEMBL
  ENSRNOT00000076106 UniProtKB/TrEMBL
  ENSRNOT00000076705 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7308722 IMAGE-MGC_LOAD
InterPro Band_41_domain UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTPN3/4_FERM_C UniProtKB/TrEMBL
  Tyr/Dual-specificity_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_non-rcpt_typ-3/4 UniProtKB/TrEMBL
  Tyr_Pase_rcpt/non-rcpt UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
KEGG Report rno:362524 UniProtKB/TrEMBL
MGC_CLONE MGC:109219 IMAGE-MGC_LOAD
NCBI Gene 362524 ENTREZGENE
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PhenoGen Ptpn3 PhenoGen
PIRSF Tyr-Ptase_nr3 UniProtKB/TrEMBL
PRINTS BAND41 UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A096MJA1_RAT UniProtKB/TrEMBL
  A0A096MJT2 ENTREZGENE, UniProtKB/TrEMBL
  F1LQQ5 ENTREZGENE, UniProtKB/TrEMBL
  Q562B7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Ptpn3  protein tyrosine phosphatase, non-receptor type 3  Ptpn3_predicted  protein tyrosine phosphatase, non-receptor type 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ptpn3_predicted  protein tyrosine phosphatase, non-receptor type 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED