Fam184a (family with sequence similarity 184, member A) - Rat Genome Database

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Gene: Fam184a (family with sequence similarity 184, member A) Rattus norvegicus
Analyze
Symbol: Fam184a
Name: family with sequence similarity 184, member A
RGD ID: 1311294
Description: Predicted to be located in P-body and centriolar satellite. Orthologous to human FAM184A (family with sequence similarity 184 member A); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam184a-ps1; family with sequence similarity 184, member A, pseudogene 1; LOC361853; RGD1311294; similar to Hypothetical protein C6orf60
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82033,477,089 - 33,599,296 (-)NCBIGRCr8
mRatBN7.22032,934,424 - 33,056,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02034,935,029 - 35,054,806 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,936,050 - 35,054,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,692,488 - 36,756,615 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42032,302,579 - 32,424,940 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12032,316,118 - 32,438,756 (-)NCBI
Celera2034,326,713 - 34,448,559 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22664934  


Genomics

Comparative Map Data
Fam184a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82033,477,089 - 33,599,296 (-)NCBIGRCr8
mRatBN7.22032,934,424 - 33,056,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02034,935,029 - 35,054,806 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2034,936,050 - 35,054,881 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02036,692,488 - 36,756,615 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42032,302,579 - 32,424,940 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12032,316,118 - 32,438,756 (-)NCBI
Celera2034,326,713 - 34,448,559 (-)NCBICelera
Cytogenetic Map20q11NCBI
FAM184A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386118,959,763 - 119,149,128 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6118,959,763 - 119,149,387 (-)EnsemblGRCh38hg38GRCh38
GRCh376119,280,928 - 119,470,293 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366119,322,694 - 119,512,057 (-)NCBINCBI36Build 36hg18NCBI36
Build 346119,322,696 - 119,441,511NCBI
Celera6120,025,627 - 120,214,634 (-)NCBICelera
Cytogenetic Map6q22.31NCBI
HuRef6116,863,106 - 117,052,494 (-)NCBIHuRef
CHM1_16119,545,394 - 119,734,528 (-)NCBICHM1_1
T2T-CHM13v2.06120,145,951 - 120,335,327 (-)NCBIT2T-CHM13v2.0
Fam184a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391053,509,131 - 53,627,368 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1053,509,241 - 53,627,219 (-)EnsemblGRCm39 Ensembl
GRCm381053,633,035 - 53,751,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1053,633,145 - 53,751,123 (-)EnsemblGRCm38mm10GRCm38
MGSCv371053,352,951 - 53,470,715 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361053,321,560 - 53,439,324 (-)NCBIMGSCv36mm8
Celera1054,460,636 - 54,578,309 (-)NCBICelera
Cytogenetic Map10B3NCBI
cM Map1027.26NCBI
Fam184a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554361,669,200 - 1,761,908 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554361,669,200 - 1,761,908 (-)NCBIChiLan1.0ChiLan1.0
FAM184A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25138,973,657 - 139,091,644 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16136,870,610 - 137,059,584 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06116,768,098 - 116,957,070 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16120,908,637 - 121,026,173 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6120,908,644 - 121,026,173 (-)Ensemblpanpan1.1panPan2
FAM184A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,904,923 - 59,011,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,904,921 - 59,012,162 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha159,707,485 - 59,814,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0159,089,781 - 59,198,000 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl159,089,794 - 59,199,815 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,989,648 - 59,098,043 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,831,447 - 58,938,400 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0159,463,299 - 59,571,035 (-)NCBIUU_Cfam_GSD_1.0
Fam184a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946109,655,107 - 109,781,741 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366581,761,885 - 1,888,622 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366581,762,432 - 1,888,603 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM184A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl143,003,390 - 43,113,631 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1143,003,765 - 43,113,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2148,197,133 - 48,263,829 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM184A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11354,775,147 - 54,913,979 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1354,775,270 - 54,913,975 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604027,107,544 - 27,230,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam184a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479811,182,977 - 11,276,294 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479811,182,893 - 11,280,399 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam184a
826 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:35
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000000475
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006223914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006256500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008773015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005497786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_597425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_599445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000000475   ⟹   ENSRNOP00000000475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
Rnor_6.0 Ensembl2034,936,050 - 35,054,881 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094736   ⟹   ENSRNOP00000084070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105113   ⟹   ENSRNOP00000083701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109090   ⟹   ENSRNOP00000093426
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109149   ⟹   ENSRNOP00000079991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120309   ⟹   ENSRNOP00000092174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2032,934,636 - 33,056,652 (-)Ensembl
RefSeq Acc Id: NM_001427095   ⟹   NP_001414024
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,089 - 33,599,293 (-)NCBI
RefSeq Acc Id: XM_008773015   ⟹   XP_008771237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
Rnor_6.02034,935,043 - 35,054,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099313   ⟹   XP_038955241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
RefSeq Acc Id: XM_039099314   ⟹   XP_038955242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,626 (-)NCBI
RefSeq Acc Id: XM_039099315   ⟹   XP_038955243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
RefSeq Acc Id: XM_039099316   ⟹   XP_038955244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,626 (-)NCBI
RefSeq Acc Id: XM_039099317   ⟹   XP_038955245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,936,716 - 33,056,625 (-)NCBI
RefSeq Acc Id: XM_039099318   ⟹   XP_038955246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
RefSeq Acc Id: XM_039099319   ⟹   XP_038955247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,626 (-)NCBI
RefSeq Acc Id: XM_039099320   ⟹   XP_038955248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,515 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
RefSeq Acc Id: XM_039099321   ⟹   XP_038955249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,626 (-)NCBI
RefSeq Acc Id: XM_039099322   ⟹   XP_038955250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,626 (-)NCBI
RefSeq Acc Id: XM_039099323   ⟹   XP_038955251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,540,916 (-)NCBI
mRatBN7.22032,934,424 - 32,998,250 (-)NCBI
RefSeq Acc Id: XM_063279312   ⟹   XP_063135382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
RefSeq Acc Id: XM_063279314   ⟹   XP_063135384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
RefSeq Acc Id: XM_063279315   ⟹   XP_063135385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,103 - 33,599,296 (-)NCBI
RefSeq Acc Id: XR_005497785
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,614 - 33,599,296 (-)NCBI
mRatBN7.22032,934,424 - 33,056,625 (-)NCBI
RefSeq Acc Id: XR_005497786
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82033,477,694 - 33,599,296 (-)NCBI
mRatBN7.22032,935,022 - 33,056,625 (-)NCBI
RefSeq Acc Id: XP_008771237   ⟸   XM_008773015
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZWH8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000475   ⟸   ENSRNOT00000000475
RefSeq Acc Id: XP_038955250   ⟸   XM_039099322
- Peptide Label: isoform X13
- UniProtKB: A6K499 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955247   ⟸   XM_039099319
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AX05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955249   ⟸   XM_039099321
- Peptide Label: isoform X12
- UniProtKB: A0A8I6A0I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955244   ⟸   XM_039099316
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZS46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955242   ⟸   XM_039099314
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZWH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955246   ⟸   XM_039099318
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZS46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955243   ⟸   XM_039099315
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AHN2 (UniProtKB/TrEMBL),   A0A8I5ZWH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955248   ⟸   XM_039099320
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A0I8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955241   ⟸   XM_039099313
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZS46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955251   ⟸   XM_039099323
- Peptide Label: isoform X15
- UniProtKB: A6K499 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955245   ⟸   XM_039099317
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A0I8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079991   ⟸   ENSRNOT00000109149
Ensembl Acc Id: ENSRNOP00000084070   ⟸   ENSRNOT00000094736
Ensembl Acc Id: ENSRNOP00000093426   ⟸   ENSRNOT00000109090
Ensembl Acc Id: ENSRNOP00000083701   ⟸   ENSRNOT00000105113
Ensembl Acc Id: ENSRNOP00000092174   ⟸   ENSRNOT00000120309
RefSeq Acc Id: NP_001414024   ⟸   NM_001427095
- UniProtKB: F1LW90 (UniProtKB/TrEMBL),   A0A8I5ZWH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135385   ⟸   XM_063279315
- Peptide Label: isoform X14
- UniProtKB: A6K499 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135384   ⟸   XM_063279314
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AX05 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135382   ⟸   XM_063279312
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZS46 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW90-F1-model_v2 AlphaFold F1LW90 1-1073 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701639
Promoter ID:EPDNEW_R12154
Type:single initiation site
Name:Fam184a_1
Description:family with sequence similarity 184, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02035,054,915 - 35,054,975EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311294 AgrOrtholog
BioCyc Gene G2FUF-3623 BioCyc
Ensembl Genes ENSRNOG00000026407 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000475.8 UniProtKB/TrEMBL
  ENSRNOT00000094736.1 UniProtKB/TrEMBL
  ENSRNOT00000105113.1 UniProtKB/TrEMBL
  ENSRNOT00000109090.1 UniProtKB/TrEMBL
  ENSRNOT00000109149.1 UniProtKB/TrEMBL
  ENSRNOT00000120309.1 UniProtKB/TrEMBL
InterPro FAM184A/B_N UniProtKB/TrEMBL
NCBI Gene 361853 ENTREZGENE
PANTHER PTHR18870 UniProtKB/TrEMBL
  PTHR18870:SF7 UniProtKB/TrEMBL
Pfam FAM184 UniProtKB/TrEMBL
PhenoGen Fam184a PhenoGen
RatGTEx ENSRNOG00000026407 RatGTEx
UniProt A0A8I5ZS46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWH8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0I8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHN2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AX05 ENTREZGENE, UniProtKB/TrEMBL
  A6K499 ENTREZGENE, UniProtKB/TrEMBL
  F1LW90 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-05 Fam184a  family with sequence similarity 184, member A  Fam184a-ps1  family with sequence similarity 184, member A, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Fam184a-ps1  family with sequence similarity 184, member A, pseudogene 1  Fam184a  family with sequence similarity 184, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Fam184a  family with sequence similarity 184, member A  RGD1311294  similar to Hypothetical protein C6orf60   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311294  similar to Hypothetical protein C6orf60   RGD1311294_predicted  similar to Hypothetical protein C6orf60 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311294_predicted  similar to Hypothetical protein C6orf60 (predicted)  LOC361853_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361853_predicted  similar to Hypothetical protein C6orf60 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL