Emilin1 (elastin microfibril interfacer 1) - Rat Genome Database

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Gene: Emilin1 (elastin microfibril interfacer 1) Rattus norvegicus
Analyze
Symbol: Emilin1
Name: elastin microfibril interfacer 1
RGD ID: 1311209
Description: Predicted to enable several functions, including extracellular matrix constituent conferring elasticity; identical protein binding activity; and integrin binding activity involved in cell-matrix adhesion. Predicted to be involved in several processes, including negative regulation of signal transduction; regulation of angiogenesis; and regulation of extracellular matrix organization. Predicted to act upstream of or within extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be located in collagen-containing extracellular matrix and extracellular space. Predicted to be part of EMILIN complex and integrin alpha4-beta1 complex. Human ortholog(s) of this gene implicated in autosomal dominant distal hereditary motor neuronopathy 10. Orthologous to human EMILIN1 (elastin microfibril interfacer 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: EMILIN-1; LOC298845
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Kiddil2 Kiddil4
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,175,919 - 31,183,657 (-)NCBIGRCr8
mRatBN7.2625,455,974 - 25,463,713 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,445,298 - 25,463,698 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,756,271 - 25,764,016 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,072,135 - 26,079,880 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,551,339 - 25,559,077 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,821,249 - 26,829,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,821,255 - 26,828,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,636,864 - 36,644,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,438,941 - 25,446,658 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,442,200 - 25,449,588 (-)NCBI
Celera624,946,624 - 24,954,341 (-)NCBICelera
Cytogenetic Map6q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
2-bromohexadecanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
aristolochic acid A  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
Cuprizon  (EXP)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (EXP,ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
lipopolysaccharide  (ISO)
menadione  (ISO)
methyl methanesulfonate  (ISO)
monosodium L-glutamate  (ISO)
nefazodone  (EXP)
nitrofen  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorooctanoic acid  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
selenium atom  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
triptonide  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Emilin1 links TGF-beta maturation to blood pressure homeostasis. Zacchigna L, etal., Cell. 2006 Mar 10;124(5):929-42.
Additional References at PubMed
PMID:10821830   PMID:14701737   PMID:18463100   PMID:18757743   PMID:20551380   PMID:21362503   PMID:22248097   PMID:23658023   PMID:23979707   PMID:24006456   PMID:25056700   PMID:25416956  
PMID:26462740   PMID:27068509   PMID:28701001  


Genomics

Comparative Map Data
Emilin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,175,919 - 31,183,657 (-)NCBIGRCr8
mRatBN7.2625,455,974 - 25,463,713 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,445,298 - 25,463,698 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx625,756,271 - 25,764,016 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,072,135 - 26,079,880 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,551,339 - 25,559,077 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0626,821,249 - 26,829,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl626,821,255 - 26,828,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,636,864 - 36,644,629 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,438,941 - 25,446,658 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,442,200 - 25,449,588 (-)NCBI
Celera624,946,624 - 24,954,341 (-)NCBICelera
Cytogenetic Map6q14NCBI
EMILIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38227,078,615 - 27,086,403 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl227,078,615 - 27,086,403 (+)EnsemblGRCh38hg38GRCh38
GRCh37227,301,483 - 27,309,271 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36227,155,438 - 27,162,767 (+)NCBINCBI36Build 36hg18NCBI36
Build 34227,213,584 - 27,220,914NCBI
Celera227,147,777 - 27,155,615 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef227,043,585 - 27,051,425 (+)NCBIHuRef
CHM1_1227,231,349 - 27,239,185 (+)NCBICHM1_1
T2T-CHM13v2.0227,120,286 - 27,128,076 (+)NCBIT2T-CHM13v2.0
Emilin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39531,070,729 - 31,078,623 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl531,070,746 - 31,078,621 (+)EnsemblGRCm39 Ensembl
GRCm38530,913,387 - 30,921,279 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,913,402 - 30,921,277 (+)EnsemblGRCm38mm10GRCm38
MGSCv37531,216,159 - 31,223,648 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36531,190,367 - 31,197,856 (+)NCBIMGSCv36mm8
Celera528,393,566 - 28,401,069 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.9NCBI
Emilin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554699,049,662 - 9,057,684 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554699,049,666 - 9,057,692 (+)NCBIChiLan1.0ChiLan1.0
EMILIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,429,136 - 99,437,009 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,432,910 - 99,442,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A27,077,551 - 27,085,437 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A27,166,747 - 27,174,525 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A27,166,747 - 27,174,525 (+)Ensemblpanpan1.1panPan2
EMILIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11721,071,502 - 21,078,888 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1721,071,580 - 21,078,889 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,963,506 - 20,971,268 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,391,307 - 21,399,069 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,391,263 - 21,399,050 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11721,078,565 - 21,086,326 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01721,089,650 - 21,097,411 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01721,136,118 - 21,143,825 (+)NCBIUU_Cfam_GSD_1.0
Emilin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,376,334 - 65,384,198 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,455,197 - 5,463,223 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,455,369 - 5,463,205 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EMILIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,031,917 - 112,046,429 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,031,910 - 112,039,928 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,030,516 - 119,038,504 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EMILIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,531,973 - 80,539,820 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604531,599,958 - 31,607,798 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Emilin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247389,180,877 - 9,189,025 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247389,180,944 - 9,189,025 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Emilin1
12 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:217
Count of miRNA genes:135
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000010932
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat

Markers in Region
RH131913  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,456,093 - 25,456,273 (+)MAPPERmRatBN7.2
Rnor_6.0626,821,369 - 26,821,548NCBIRnor6.0
Rnor_5.0636,636,984 - 36,637,163UniSTSRnor5.0
RGSC_v3.4625,439,055 - 25,439,234UniSTSRGSC3.4
Celera624,946,738 - 24,946,917UniSTS
RH 3.4 Map691.7UniSTS
Cytogenetic Map6q14UniSTS
Emilin1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,460,111 - 25,461,423 (+)MAPPERmRatBN7.2
Rnor_6.0626,825,387 - 26,826,698NCBIRnor6.0
Rnor_5.0636,641,002 - 36,642,313UniSTSRnor5.0
RGSC_v3.4625,443,073 - 25,444,384UniSTSRGSC3.4
Celera624,950,756 - 24,952,067UniSTS
Cytogenetic Map6q14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000010932   ⟹   ENSRNOP00000010932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,455,986 - 25,463,685 (-)Ensembl
Rnor_6.0 Ensembl626,821,255 - 26,828,972 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098682   ⟹   ENSRNOP00000093146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl625,445,298 - 25,463,698 (-)Ensembl
RefSeq Acc Id: NM_001106710   ⟹   NP_001100180
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,175,919 - 31,183,657 (-)NCBI
mRatBN7.2625,455,974 - 25,463,713 (-)NCBI
Rnor_6.0626,821,255 - 26,828,972 (-)NCBI
Rnor_5.0636,636,864 - 36,644,629 (-)NCBI
RGSC_v3.4625,438,941 - 25,446,658 (-)RGD
Celera624,946,624 - 24,954,341 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399395   ⟹   NP_001386324
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,175,919 - 31,183,657 (-)NCBI
mRatBN7.2625,455,974 - 25,463,713 (-)NCBI
RefSeq Acc Id: XM_063261631   ⟹   XP_063117701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8631,175,921 - 31,182,795 (-)NCBI
RefSeq Acc Id: NP_001100180   ⟸   NM_001106710
- Peptide Label: isoform 2
- UniProtKB: A6HAB2 (UniProtKB/TrEMBL),   A6HAB4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010932   ⟸   ENSRNOT00000010932
Ensembl Acc Id: ENSRNOP00000093146   ⟸   ENSRNOT00000098682
RefSeq Acc Id: NP_001386324   ⟸   NM_001399395
- Peptide Label: isoform 1 precursor
RefSeq Acc Id: XP_063117701   ⟸   XM_063261631
- Peptide Label: isoform X1
Protein Domains
C1q   EMI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z9E1-F1-model_v2 AlphaFold D3Z9E1 1-900 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694455
Promoter ID:EPDNEW_R4979
Type:initiation region
Name:Emilin1_1
Description:elastin microfibril interfacer 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0626,828,976 - 26,829,036EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311209 AgrOrtholog
BioCyc Gene G2FUF-38333 BioCyc
Ensembl Genes ENSRNOG00000008246 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010932.6 UniProtKB/TrEMBL
  ENSRNOT00000098682.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Collagen/C1q_domain UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report rno:298845 UniProtKB/TrEMBL
NCBI Gene 298845 ENTREZGENE
PANTHER EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
  EMILIN-1 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PhenoGen Emilin1 PhenoGen
PROSITE C1Q UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008246 RatGTEx
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP TNF_like UniProtKB/TrEMBL
UniProt A0A8I6AGS7_RAT UniProtKB/TrEMBL
  A6HAB2 ENTREZGENE, UniProtKB/TrEMBL
  A6HAB4 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9E1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Emilin1  elastin microfibril interfacer 1   Emilin1_predicted  elastin microfibril interfacer 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Emilin1_predicted  elastin microfibril interfacer 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED