Rpgrip1l (Rpgrip1-like) - Rat Genome Database

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Gene: Rpgrip1l (Rpgrip1-like) Rattus norvegicus
Analyze
Symbol: Rpgrip1l
Name: Rpgrip1-like
RGD ID: 1311099
Description: Predicted to enable thromboxane A2 receptor binding activity. Predicted to be involved in negative regulation of G protein-coupled receptor signaling pathway; non-motile cilium assembly; and retinal rod cell development. Predicted to act upstream of or within several processes, including cochlea development; embryonic limb morphogenesis; and nervous system development. Located in cytoskeleton and photoreceptor connecting cilium. Human ortholog(s) of this gene implicated in several diseases, including Joubert syndrome 7; Meckel syndrome 5; anencephaly; retinitis pigmentosa 3; and vascular dementia. Orthologous to human RPGRIP1L (RPGRIP1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307724; protein fantom; RGD1311099; similar to Fantom protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81931,865,050 - 31,957,930 (+)NCBIGRCr8
mRatBN7.21915,692,189 - 15,785,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1915,692,150 - 15,785,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1917,381,318 - 17,473,822 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01922,575,853 - 22,668,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01925,521,979 - 25,614,595 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01917,115,266 - 17,208,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01928,182,466 - 28,274,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41916,859,114 - 16,952,054 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11916,866,903 - 16,953,660 (+)NCBI
Celera1915,599,054 - 15,691,270 (+)NCBICelera
Cytogenetic Map19p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mutations in the gene encoding the basal body protein RPGRIP1L, a nephrocystin-4 interactor, cause Joubert syndrome. Arts HH, etal., Nat Genet. 2007 Jul;39(7):882-8. Epub 2007 Jun 10.
2. The ciliopathy-associated protein homologs RPGRIP1 and RPGRIP1L are linked to cilium integrity through interaction with Nek4 serine/threonine kinase. Coene KL, etal., Hum Mol Genet. 2011 Sep 15;20(18):3592-605. doi: 10.1093/hmg/ddr280. Epub 2011 Jun 17.
3. The ciliary gene RPGRIP1L is mutated in cerebello-oculo-renal syndrome (Joubert syndrome type B) and Meckel syndrome. Delous M, etal., Nat Genet. 2007 Jul;39(7):875-81. Epub 2007 Jun 10.
4. Polymorphic variation of RPGRIP1L and IQCB1 as modifiers of X-linked retinitis pigmentosa caused by mutations in RPGR. Fahim AT, etal., Adv Exp Med Biol. 2012;723:313-20. doi: 10.1007/978-1-4614-0631-0_41.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. Mutational analysis of the RPGRIP1L gene in patients with Joubert syndrome and nephronophthisis. Wolf MT, etal., Kidney Int. 2007 Dec;72(12):1520-6. Epub 2007 Oct 24.
11. Genetic association of the gene encoding RPGRIP1L with susceptibility to vascular dementia. Woo J and Lee C, Gene. 2012 May 10;499(1):160-2. doi: 10.1016/j.gene.2012.03.010. Epub 2012 Mar 8.
Additional References at PubMed
PMID:17553904   PMID:19464661   PMID:21399614   PMID:21565611   PMID:22832925   PMID:22927466   PMID:26595381   PMID:29487109  


Genomics

Comparative Map Data
Rpgrip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81931,865,050 - 31,957,930 (+)NCBIGRCr8
mRatBN7.21915,692,189 - 15,785,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1915,692,150 - 15,785,083 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1917,381,318 - 17,473,822 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01922,575,853 - 22,668,370 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01925,521,979 - 25,614,595 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01917,115,266 - 17,208,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01928,182,466 - 28,274,100 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41916,859,114 - 16,952,054 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11916,866,903 - 16,953,660 (+)NCBI
Celera1915,599,054 - 15,691,270 (+)NCBICelera
Cytogenetic Map19p11NCBI
RPGRIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381653,598,153 - 53,703,859 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1653,598,153 - 53,703,938 (-)EnsemblGRCh38hg38GRCh38
GRCh371653,632,065 - 53,737,771 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361652,191,319 - 52,295,272 (-)NCBINCBI36Build 36hg18NCBI36
Celera1638,148,632 - 38,252,362 (-)NCBICelera
Cytogenetic Map16q12.2NCBI
HuRef1639,520,935 - 39,624,598 (-)NCBIHuRef
CHM1_11655,040,948 - 55,144,907 (-)NCBICHM1_1
T2T-CHM13v2.01659,395,985 - 59,501,692 (-)NCBIT2T-CHM13v2.0
Rpgrip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39891,943,658 - 92,039,919 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl891,943,658 - 92,039,890 (-)EnsemblGRCm39 Ensembl
GRCm38891,217,030 - 91,313,291 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl891,217,030 - 91,313,262 (-)EnsemblGRCm38mm10GRCm38
MGSCv37893,740,929 - 93,837,121 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36894,107,135 - 94,203,367 (-)NCBIMGSCv36mm8
Celera895,531,605 - 95,629,333 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map844.29NCBI
Rpgrip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543311,322,590 - 11,424,569 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543311,321,504 - 11,423,981 (-)NCBIChiLan1.0ChiLan1.0
RPGRIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21863,030,811 - 63,133,805 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11668,949,407 - 69,052,432 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01633,836,361 - 33,939,265 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11652,920,790 - 53,023,178 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1652,920,796 - 53,023,174 (-)Ensemblpanpan1.1panPan2
RPGRIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,080,159 - 62,179,694 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,080,080 - 62,178,284 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,713,210 - 58,814,422 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0262,621,842 - 62,723,085 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl262,621,948 - 62,721,417 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1259,445,507 - 59,546,724 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0260,472,284 - 60,567,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0261,348,461 - 61,449,678 (+)NCBIUU_Cfam_GSD_1.0
Rpgrip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934953,267,379 - 53,369,387 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364756,215,475 - 6,321,618 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364756,219,187 - 6,321,612 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPGRIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl631,564,986 - 31,661,190 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1631,564,937 - 31,660,540 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2628,582,612 - 28,591,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPGRIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1539,388,632 - 39,487,223 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl539,387,107 - 39,487,092 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604736,894,183 - 36,995,212 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpgrip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247573,079,712 - 3,172,115 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247573,080,162 - 3,172,750 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rpgrip1l
543 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:460
Count of miRNA genes:230
Interacting mature miRNAs:316
Transcripts:ENSRNOT00000015876
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1558656Prcs1Prostate cancer susceptibility QTL 15prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)191511459834521833Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19997775339654489Rat
61407Scl12Serum cholesterol level QTL 120.001blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)191392640130303727Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat

Markers in Region
D19Got7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21915,764,127 - 15,764,336 (+)MAPPERmRatBN7.2
Rnor_6.01917,187,100 - 17,187,308NCBIRnor6.0
Rnor_5.01928,253,145 - 28,253,353UniSTSRnor5.0
RGSC_v3.41916,931,100 - 16,931,307RGDRGSC3.4
RGSC_v3.41916,931,099 - 16,931,307UniSTSRGSC3.4
RGSC_v3.11916,935,926 - 16,936,133RGD
Celera1915,670,316 - 15,670,524UniSTS
RH 2.0 Map19274.9RGD
Cytogenetic Map19p11UniSTS
AU028726  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21915,733,600 - 15,733,719 (+)MAPPERmRatBN7.2
Rnor_6.01917,156,585 - 17,156,703NCBIRnor6.0
Rnor_5.01928,223,686 - 28,223,804UniSTSRnor5.0
RGSC_v3.41916,900,584 - 16,900,702UniSTSRGSC3.4
Celera1915,640,136 - 15,640,254UniSTS
Cytogenetic Map19p11UniSTS
RH138333  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21915,782,270 - 15,782,483 (+)MAPPERmRatBN7.2
Rnor_6.01917,205,243 - 17,205,455NCBIRnor6.0
Rnor_5.01928,271,288 - 28,271,500UniSTSRnor5.0
RGSC_v3.41916,949,242 - 16,949,454UniSTSRGSC3.4
Celera1915,688,458 - 15,688,670UniSTS
Cytogenetic Map19p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063278014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010059995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000015876   ⟹   ENSRNOP00000015876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1915,692,370 - 15,785,083 (+)Ensembl
Rnor_6.0 Ensembl1917,115,412 - 17,208,055 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108798   ⟹   ENSRNOP00000090332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1915,692,150 - 15,785,083 (+)Ensembl
RefSeq Acc Id: NM_001107414   ⟹   NP_001100884
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,865,231 - 31,957,930 (+)NCBI
mRatBN7.21915,692,370 - 15,785,083 (+)NCBI
Rnor_6.01917,115,412 - 17,208,055 (+)NCBI
Rnor_5.01928,182,466 - 28,274,100 (+)NCBI
RGSC_v3.41916,859,114 - 16,952,054 (+)RGD
Celera1915,599,054 - 15,691,270 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097720   ⟹   XP_038953648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,890,559 - 31,957,560 (+)NCBI
mRatBN7.21915,717,702 - 15,784,717 (+)NCBI
RefSeq Acc Id: XM_063278004   ⟹   XP_063134074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,781 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278005   ⟹   XP_063134075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,865,071 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278006   ⟹   XP_063134076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,865,050 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278007   ⟹   XP_063134077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,865,255 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278008   ⟹   XP_063134078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,870,243 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278009   ⟹   XP_063134079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,781 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278010   ⟹   XP_063134080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,876,709 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278011   ⟹   XP_063134081
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,890,559 - 31,957,560 (+)NCBI
RefSeq Acc Id: XM_063278012   ⟹   XP_063134082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,780 - 31,924,282 (+)NCBI
RefSeq Acc Id: XM_063278013   ⟹   XP_063134083
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,780 - 31,903,568 (+)NCBI
RefSeq Acc Id: XM_063278014   ⟹   XP_063134084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,865,241 - 31,873,700 (+)NCBI
RefSeq Acc Id: XR_010059993
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,780 - 31,941,956 (+)NCBI
RefSeq Acc Id: XR_010059994
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,780 - 31,904,910 (+)NCBI
RefSeq Acc Id: XR_010059995
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81931,866,779 - 31,877,439 (+)NCBI
RefSeq Acc Id: NP_001100884   ⟸   NM_001107414
- UniProtKB: A6KD74 (UniProtKB/TrEMBL),   D3Z8G3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015876   ⟸   ENSRNOT00000015876
RefSeq Acc Id: XP_038953648   ⟸   XM_039097720
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000090332   ⟸   ENSRNOT00000108798
RefSeq Acc Id: XP_063134076   ⟸   XM_063278006
- Peptide Label: isoform X1
- UniProtKB: A6KD74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134075   ⟸   XM_063278005
- Peptide Label: isoform X1
- UniProtKB: A6KD74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134084   ⟸   XM_063278014
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063134077   ⟸   XM_063278007
- Peptide Label: isoform X1
- UniProtKB: A6KD74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134082   ⟸   XM_063278012
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063134083   ⟸   XM_063278013
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063134079   ⟸   XM_063278009
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063134074   ⟸   XM_063278004
- Peptide Label: isoform X1
- UniProtKB: A6KD74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134078   ⟸   XM_063278008
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A999 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134080   ⟸   XM_063278010
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063134081   ⟸   XM_063278011
- Peptide Label: isoform X5
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8G3-F1-model_v2 AlphaFold D3Z8G3 1-1264 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700972
Promoter ID:EPDNEW_R11495
Type:single initiation site
Name:Rpgrip1l_1
Description:Rpgrip1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01917,115,414 - 17,115,474EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311099 AgrOrtholog
BioCyc Gene G2FUF-6361 BioCyc
Ensembl Genes ENSRNOG00000011829 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015876.4 UniProtKB/TrEMBL
  ENSRNOT00000108798.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  DUF3250 UniProtKB/TrEMBL
  RPGRIP1_C UniProtKB/TrEMBL
  RPGRIP1_fam UniProtKB/TrEMBL
KEGG Report rno:307724 UniProtKB/TrEMBL
NCBI Gene 307724 ENTREZGENE
PANTHER PTHR14240 UniProtKB/TrEMBL
  PTHR14240:SF4 UniProtKB/TrEMBL
Pfam DUF3250 UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
  RPGR1_C UniProtKB/TrEMBL
PhenoGen Rpgrip1l PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011829 RatGTEx
SMART SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A8I6A999 ENTREZGENE, UniProtKB/TrEMBL
  A6KD74 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8G3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Rpgrip1l  Rpgrip1-like  RGD1311099_predicted  similar to Fantom protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311099_predicted  similar to Fantom protein (predicted)  LOC307724_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307724_predicted  similar to Fantom protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL