Fam76b (family with sequence similarity 76, member B) - Rat Genome Database

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Gene: Fam76b (family with sequence similarity 76, member B) Rattus norvegicus
Analyze
Symbol: Fam76b
Name: family with sequence similarity 76, member B
RGD ID: 1311077
Description: Predicted to be involved in several processes, including mRNA stabilization; negative regulation of macrophage activation; and negative regulation of protein export from nucleus. Predicted to be active in nuclear speck. Orthologous to human FAM76B (family with sequence similarity 76 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC367021; LOC367021; RGD1311077; similar to RIKEN cDNA 2810485I05; uncharacterized protein LOC367021
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8818,971,357 - 18,993,442 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl818,971,100 - 18,995,039 (+)EnsemblGRCr8
mRatBN7.2810,689,396 - 10,711,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl810,688,963 - 10,711,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx814,676,736 - 14,695,256 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0812,974,462 - 12,992,982 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0810,950,851 - 10,969,492 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,355,767 - 12,378,040 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,355,767 - 12,374,689 (+)Ensemblrn6Rnor6.0
Rnor_5.0812,306,043 - 12,328,316 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4810,628,599 - 10,647,170 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera812,190,439 - 12,208,999 (+)NCBICelera
RGSC_v3.1810,628,827 - 10,644,767 (+)NCBI
Cytogenetic Map8q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear speck  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19266028  


Genomics

Comparative Map Data
Fam76b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8818,971,357 - 18,993,442 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl818,971,100 - 18,995,039 (+)EnsemblGRCr8
mRatBN7.2810,689,396 - 10,711,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl810,688,963 - 10,711,861 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx814,676,736 - 14,695,256 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0812,974,462 - 12,992,982 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0810,950,851 - 10,969,492 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,355,767 - 12,378,040 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,355,767 - 12,374,689 (+)Ensemblrn6Rnor6.0
Rnor_5.0812,306,043 - 12,328,316 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4810,628,599 - 10,647,170 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera812,190,439 - 12,208,999 (+)NCBICelera
RGSC_v3.1810,628,827 - 10,644,767 (+)NCBI
Cytogenetic Map8q12NCBI
FAM76B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,768,953 - 95,789,782 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,768,953 - 95,790,409 (-)Ensemblhg38GRCh38
GRCh371195,502,117 - 95,522,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,141,754 - 95,162,602 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1192,800,487 - 92,821,336 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1191,567,880 - 91,588,726 (-)NCBIHuRef
CHM1_11195,385,119 - 95,405,963 (-)NCBICHM1_1
T2T-CHM13v2.01195,776,343 - 95,797,175 (-)NCBIT2T-CHM13v2.0
Fam76b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,738,490 - 13,766,033 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl913,739,012 - 13,766,283 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38913,827,194 - 13,854,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,827,716 - 13,854,987 (+)Ensemblmm10GRCm38
MGSCv37913,632,171 - 13,650,966 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36913,578,124 - 13,596,919 (+)NCBIMGSCv36mm8
Celera911,106,163 - 11,124,958 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.51NCBI
Fam76b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955412644,379 - 665,017 (-)Ensembl
ChiLan1.0NW_004955412617,089 - 664,452 (-)NCBIChiLan1.0ChiLan1.0
FAM76B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2996,614,732 - 96,635,271 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,706,197 - 97,726,993 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01190,774,244 - 90,795,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11194,301,937 - 94,322,758 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1194,301,937 - 94,322,788 (-)EnsemblpanPan2panpan1.1
FAM76B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,360,773 - 5,461,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,361,591 - 5,379,759 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha215,370,934 - 5,548,637 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0215,534,546 - 5,712,428 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl215,535,187 - 5,556,990 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,329,264 - 5,506,983 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0215,390,915 - 5,568,671 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0215,438,594 - 5,616,336 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam76b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,609,582 - 80,630,366 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367001,915,407 - 1,934,533 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367001,915,370 - 1,933,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM76B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,790,150 - 27,812,222 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1927,790,139 - 27,813,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,705,850 - 31,727,932 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM76B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,024,575 - 87,046,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604338,769,943 - 38,790,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam76b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473540,626,364 - 40,646,474 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473540,626,450 - 40,646,360 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam76b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v189,680,945 - 9,703,381 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam76b
56 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1095
Count of miRNA genes:340
Interacting mature miRNAs:464
Transcripts:ENSRNOT00000068445
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8132882639Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001394343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_172100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068445   ⟹   ENSRNOP00000062410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl818,971,100 - 18,990,084 (+)Ensembl
mRatBN7.2 Ensembl810,689,925 - 10,708,496 (+)Ensembl
Rnor_6.0 Ensembl812,355,767 - 12,374,689 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110566   ⟹   ENSRNOP00000091238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl818,971,537 - 18,995,039 (+)Ensembl
mRatBN7.2 Ensembl810,688,963 - 10,708,496 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110705   ⟹   ENSRNOP00000092636
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl818,971,537 - 18,993,922 (+)Ensembl
mRatBN7.2 Ensembl810,689,925 - 10,711,861 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116723   ⟹   ENSRNOP00000087548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl818,971,537 - 18,990,084 (+)Ensembl
mRatBN7.2 Ensembl810,689,925 - 10,708,496 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000123240   ⟹   ENSRNOP00000105068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl818,971,537 - 18,986,332 (+)Ensembl
RefSeq Acc Id: NM_001394343   ⟹   NP_001381272
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,537 - 18,990,084 (+)NCBI
mRatBN7.2810,689,942 - 10,708,489 (+)NCBI
RefSeq Acc Id: NM_001401220   ⟹   NP_001388149
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,537 - 18,990,084 (+)NCBI
mRatBN7.2810,689,942 - 10,708,489 (+)NCBI
RefSeq Acc Id: NR_172100
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,537 - 18,990,084 (+)NCBI
mRatBN7.2810,689,942 - 10,708,489 (+)NCBI
RefSeq Acc Id: XM_006242526   ⟹   XP_006242588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,993,442 (+)NCBI
mRatBN7.2810,689,628 - 10,711,847 (+)NCBI
Rnor_6.0812,355,782 - 12,378,040 (+)NCBI
Rnor_5.0812,306,043 - 12,328,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242527   ⟹   XP_006242589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,993,442 (+)NCBI
mRatBN7.2810,689,626 - 10,711,847 (+)NCBI
Rnor_6.0812,355,782 - 12,378,040 (+)NCBI
Rnor_5.0812,306,043 - 12,328,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006242531   ⟹   XP_006242593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,973,489 - 18,993,442 (+)NCBI
mRatBN7.2810,689,396 - 10,711,847 (+)NCBI
Rnor_6.0812,358,800 - 12,378,040 (+)NCBI
Rnor_5.0812,306,043 - 12,328,316 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081825   ⟹   XP_038937753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,990,080 (+)NCBI
mRatBN7.2810,689,628 - 10,708,497 (+)NCBI
RefSeq Acc Id: XM_039081826   ⟹   XP_038937754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,990,080 (+)NCBI
mRatBN7.2810,689,630 - 10,708,497 (+)NCBI
RefSeq Acc Id: XM_039081827   ⟹   XP_038937755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,973,489 - 18,993,442 (+)NCBI
mRatBN7.2810,689,621 - 10,711,847 (+)NCBI
RefSeq Acc Id: XM_039081829   ⟹   XP_038937757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,980,950 (+)NCBI
mRatBN7.2810,689,630 - 10,699,348 (+)NCBI
RefSeq Acc Id: XR_010054003
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,980,871 (+)NCBI
RefSeq Acc Id: XR_010054004
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,980,957 (+)NCBI
RefSeq Acc Id: XR_010054005
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8818,971,357 - 18,980,873 (+)NCBI
RefSeq Acc Id: XP_006242588   ⟸   XM_006242526
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AI20 (UniProtKB/TrEMBL),   A0A8I6GJF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242589   ⟸   XM_006242527
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GJF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242593   ⟸   XM_006242531
- Peptide Label: isoform X5
- Sequence:
Ensembl Acc Id: ENSRNOP00000062410   ⟸   ENSRNOT00000068445
RefSeq Acc Id: XP_038937755   ⟸   XM_039081827
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038937753   ⟸   XM_039081825
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GJF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937754   ⟸   XM_039081826
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GJF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937757   ⟸   XM_039081829
- Peptide Label: isoform X7
- UniProtKB: D3Z8B9 (UniProtKB/TrEMBL),   A6JN81 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091238   ⟸   ENSRNOT00000110566
Ensembl Acc Id: ENSRNOP00000087548   ⟸   ENSRNOT00000116723
Ensembl Acc Id: ENSRNOP00000092636   ⟸   ENSRNOT00000110705
RefSeq Acc Id: NP_001388149   ⟸   NM_001401220
- Peptide Label: isoform 2
- UniProtKB: A0A8I6GG35 (UniProtKB/TrEMBL),   A6JN80 (UniProtKB/TrEMBL),   A0A8I6GJF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381272   ⟸   NM_001394343
- Peptide Label: isoform 1
- UniProtKB: A0A8I6GJF8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000105068   ⟸   ENSRNOT00000123240

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z8B9-F1-model_v2 AlphaFold D3Z8B9 1-233 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695743
Promoter ID:EPDNEW_R6267
Type:initiation region
Name:Fam76b_1
Description:family with sequence similarity 76, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0812,355,799 - 12,355,859EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311077 AgrOrtholog
BioCyc Gene G2FUF-31705 BioCyc
Ensembl Genes ENSRNOG00000024863 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068445.3 UniProtKB/TrEMBL
  ENSRNOT00000110566.2 UniProtKB/TrEMBL
  ENSRNOT00000110705 ENTREZGENE
  ENSRNOT00000110705.2 UniProtKB/TrEMBL
  ENSRNOT00000116723 ENTREZGENE
  ENSRNOT00000116723.2 UniProtKB/TrEMBL
  ENSRNOT00000123240 ENTREZGENE
  ENSRNOT00000123240.1 UniProtKB/TrEMBL
InterPro FAM76 UniProtKB/TrEMBL
NCBI Gene 367021 ENTREZGENE
PANTHER PTHR46176 UniProtKB/TrEMBL
  PTHR46176:SF3 UniProtKB/TrEMBL
Pfam FAM76 UniProtKB/TrEMBL
PhenoGen Fam76b PhenoGen
RatGTEx ENSRNOG00000024863 RatGTEx
UniProt A0A8I6AI20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GG35 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GJF8 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMZ5_RAT UniProtKB/TrEMBL
  A6JN80 ENTREZGENE, UniProtKB/TrEMBL
  A6JN81 ENTREZGENE, UniProtKB/TrEMBL
  D3Z8B9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-16 Fam76b  family with sequence similarity 76, member B  RGD1311077  similar to RIKEN cDNA 2810485I05   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311077  similar to RIKEN cDNA 2810485I05   RGD1311077_predicted  similar to RIKEN cDNA 2810485I05 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311077_predicted  similar to RIKEN cDNA 2810485I05 (predicted)  LOC367021_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC367021_predicted  similar to RIKEN cDNA 2810485I05 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL