Dysf (dysferlin) - Rat Genome Database

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Gene: Dysf (dysferlin) Rattus norvegicus
Analyze
Symbol: Dysf
Name: dysferlin
RGD ID: 1311023
Description: Predicted to enable calcium ion binding activity; calcium-dependent phospholipid binding activity; and tubulin binding activity. Predicted to be involved in T-tubule organization; plasma membrane repair; and vesicle fusion. Predicted to act upstream of or within several processes, including myeloid cell activation involved in immune response; negative regulation of macromolecule metabolic process; and regulation of calcium ion transport. Located in cytoplasm. Human ortholog(s) of this gene implicated in Miyoshi muscular dystrophy 1; autosomal recessive limb-girdle muscular dystrophy type 2B; distal myopathy with anterior tibial onset; and muscular dystrophy. Orthologous to human DYSF (dysferlin); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC312492
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84118,048,460 - 118,248,273 (+)NCBIGRCr8
GRCr8 Ensembl4118,047,989 - 118,248,273 (+)EnsemblGRCr8 Ensembl
mRatBN7.24116,490,877 - 116,690,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,490,616 - 116,690,709 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,983,927 - 122,171,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,759,103 - 117,946,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,372,867 - 116,560,019 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,700,942 - 115,901,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,712,850 - 115,901,873 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,288,855 - 180,487,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,213,435 - 118,371,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4105,495,200 - 105,681,284 (+)NCBICelera
RGSC_v3.14118,457,915 - 118,629,177 (+)NCBI
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiloride  (ISO)
amitrole  (EXP)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
DDE  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
epoxiconazole  (ISO)
ethylparaben  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
indoles  (EXP)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylisothiazolinone  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
rotenone  (EXP)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. AHNAK, a novel component of the dysferlin protein complex, redistributes to the cytoplasm with dysferlin during skeletal muscle regeneration. Huang Y, etal., FASEB J. 2007 Mar;21(3):732-42. Epub 2006 Dec 21.
4. Dysferlin, a novel skeletal muscle gene, is mutated in Miyoshi myopathy and limb girdle muscular dystrophy. Liu J, etal., Nat Genet. 1998 Sep;20(1):31-6.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11959863   PMID:12736685   PMID:14506282   PMID:16319126   PMID:16371353   PMID:18276788   PMID:18325335   PMID:19056867   PMID:19286669   PMID:20082313   PMID:20405035   PMID:20595382  
PMID:20724702   PMID:22043020   PMID:23533145   PMID:24177035   PMID:24203699   PMID:24239457   PMID:24302765   PMID:24685690   PMID:24784578   PMID:26795240   PMID:32572487  


Genomics

Comparative Map Data
Dysf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84118,048,460 - 118,248,273 (+)NCBIGRCr8
GRCr8 Ensembl4118,047,989 - 118,248,273 (+)EnsemblGRCr8 Ensembl
mRatBN7.24116,490,877 - 116,690,709 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4116,490,616 - 116,690,709 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,983,927 - 122,171,488 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04117,759,103 - 117,946,672 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04116,372,867 - 116,560,019 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04115,700,942 - 115,901,873 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4115,712,850 - 115,901,873 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04180,288,855 - 180,487,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44118,213,435 - 118,371,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4105,495,200 - 105,681,284 (+)NCBICelera
RGSC_v3.14118,457,915 - 118,629,177 (+)NCBI
Cytogenetic Map4q34NCBI
DYSF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38271,453,561 - 71,686,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl271,453,561 - 71,686,763 (+)EnsemblGRCh38hg38GRCh38
GRCh37271,680,691 - 71,913,893 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36271,534,268 - 71,767,401 (+)NCBINCBI36Build 36hg18NCBI36
Build 34271,592,414 - 71,825,547NCBI
Celera271,531,488 - 71,764,393 (+)NCBICelera
Cytogenetic Map2p13.2NCBI
HuRef271,417,813 - 71,651,420 (+)NCBIHuRef
CHM1_1271,610,103 - 71,843,209 (+)NCBICHM1_1
T2T-CHM13v2.0271,464,487 - 71,699,459 (+)NCBIT2T-CHM13v2.0
Dysf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,985,344 - 84,188,042 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,985,572 - 84,188,042 (+)EnsemblGRCm39 Ensembl
GRCm38684,008,361 - 84,211,060 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl684,008,590 - 84,211,060 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,958,584 - 84,161,036 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,985,176 - 84,176,489 (+)NCBIMGSCv36mm8
Celera685,991,070 - 86,190,755 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map636.14NCBI
Dysf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542413,756,130 - 13,970,436 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542413,756,130 - 13,970,437 (-)NCBIChiLan1.0ChiLan1.0
DYSF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21254,703,585 - 54,938,220 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A54,706,330 - 54,940,927 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A71,495,573 - 71,730,073 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A72,994,889 - 73,228,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A72,994,888 - 73,228,846 (+)Ensemblpanpan1.1panPan2
DYSF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11751,011,197 - 51,228,969 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1751,011,197 - 51,228,876 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1750,660,840 - 50,877,038 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01751,883,528 - 52,100,122 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1751,883,544 - 52,100,074 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11750,890,621 - 51,106,714 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01750,956,991 - 51,173,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01751,531,225 - 51,747,532 (-)NCBIUU_Cfam_GSD_1.0
Dysf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629212,952,773 - 13,158,562 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649115,413,206 - 15,618,519 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649115,412,606 - 15,618,519 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYSF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl371,020,144 - 71,246,967 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1371,020,143 - 71,237,658 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2374,464,909 - 74,674,775 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYSF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11435,488,393 - 35,715,222 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1435,488,391 - 35,651,395 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604576,314,814 - 76,551,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dysf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247621,936,775 - 2,166,825 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247621,936,775 - 2,166,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dysf
1396 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:45
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000064536
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat

Markers in Region
D4Rat78  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84118,111,067 - 118,111,211 (+)Marker Load Pipeline
mRatBN7.24116,553,490 - 116,553,633 (+)MAPPERmRatBN7.2
Rnor_6.04115,764,185 - 115,764,327NCBIRnor6.0
Rnor_5.04180,349,836 - 180,349,978UniSTSRnor5.0
RGSC_v3.44118,231,622 - 118,231,764UniSTSRGSC3.4
RGSC_v3.44118,231,620 - 118,231,764RGDRGSC3.4
Celera4105,545,921 - 105,546,078UniSTS
RGSC_v3.14118,476,101 - 118,476,245RGD
RH 3.4 Map4681.1RGD
RH 3.4 Map4681.1UniSTS
FHH x ACI Map466.84UniSTS
FHH x ACI Map466.84RGD
Cytogenetic Map4q34UniSTS
D4Rat179  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84118,159,013 - 118,159,167 (+)Marker Load Pipeline
mRatBN7.24116,601,436 - 116,601,590 (+)MAPPERmRatBN7.2
Rnor_6.04115,813,010 - 115,813,163NCBIRnor6.0
Rnor_5.04180,398,196 - 180,398,349UniSTSRnor5.0
RGSC_v3.44118,281,191 - 118,281,344UniSTSRGSC3.4
RGSC_v3.44118,281,190 - 118,281,344RGDRGSC3.4
Celera4105,594,270 - 105,594,421UniSTS
RGSC_v3.14118,525,672 - 118,525,825RGD
RH 3.4 Map4679.4RGD
RH 3.4 Map4679.4UniSTS
SHRSP x BN Map450.99UniSTS
SHRSP x BN Map450.99RGD
Cytogenetic Map4q34UniSTS
BQ211105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24116,684,937 - 116,685,140 (+)MAPPERmRatBN7.2
Rnor_6.04115,896,101 - 115,896,303NCBIRnor6.0
Rnor_5.04180,481,312 - 180,481,514UniSTSRnor5.0
RGSC_v3.44118,365,567 - 118,365,769UniSTSRGSC3.4
Celera4105,675,574 - 105,675,776UniSTS
RH 3.4 Map4682.3UniSTS
Cytogenetic Map4q34UniSTS
ha2177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26134,815,004 - 134,816,036 (+)MAPPERmRatBN7.2
Rnor_6.06141,486,520 - 141,487,551NCBIRnor6.0
Rnor_6.02155,277,708 - 155,279,406NCBIRnor6.0
Rnor_5.02174,672,126 - 174,673,824UniSTSRnor5.0
Rnor_5.06150,444,300 - 150,445,331UniSTSRnor5.0
RGSC_v3.46141,113,291 - 141,114,322UniSTSRGSC3.4
RGSC_v3.44118,240,312 - 118,241,709UniSTSRGSC3.4
Celera6132,501,565 - 132,502,596UniSTS
Cytogenetic Map2q31UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 16 16

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000064536   ⟹   ENSRNOP00000061606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,060,168 - 118,248,273 (+)Ensembl
mRatBN7.2 Ensembl4116,502,584 - 116,690,709 (+)Ensembl
Rnor_6.0 Ensembl4115,713,004 - 115,901,873 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085765   ⟹   ENSRNOP00000074138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,060,026 - 118,248,268 (+)Ensembl
mRatBN7.2 Ensembl4116,502,432 - 116,690,686 (+)Ensembl
Rnor_6.0 Ensembl4115,712,850 - 115,901,868 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000106282   ⟹   ENSRNOP00000097863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,048,113 - 118,248,252 (+)Ensembl
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108867   ⟹   ENSRNOP00000078213
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,060,026 - 118,244,448 (+)Ensembl
mRatBN7.2 Ensembl4116,502,432 - 116,686,936 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113535   ⟹   ENSRNOP00000077445
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115270   ⟹   ENSRNOP00000082754
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,047,989 - 118,248,247 (+)Ensembl
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117268   ⟹   ENSRNOP00000087285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,047,989 - 118,248,247 (+)Ensembl
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120244   ⟹   ENSRNOP00000078253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4118,047,989 - 118,248,247 (+)Ensembl
mRatBN7.2 Ensembl4116,490,616 - 116,690,686 (+)Ensembl
RefSeq Acc Id: NM_001107869   ⟹   NP_001101339
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,168 - 118,248,273 (+)NCBI
mRatBN7.24116,502,584 - 116,690,709 (+)NCBI
Rnor_6.04115,713,004 - 115,901,873 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
RGSC_v3.44118,213,435 - 118,371,283 (+)RGD
Celera4105,495,200 - 105,681,284 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236758   ⟹   XP_006236820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236760   ⟹   XP_006236822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,002 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236761   ⟹   XP_006236823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,950 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236764   ⟹   XP_006236826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236765   ⟹   XP_006236827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,951 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236766   ⟹   XP_006236828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236767   ⟹   XP_006236829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,951 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236768   ⟹   XP_006236830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236769   ⟹   XP_006236831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236770   ⟹   XP_006236832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236771   ⟹   XP_006236833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236772   ⟹   XP_006236834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,689 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236773   ⟹   XP_006236835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,689 (+)NCBI
Rnor_6.04115,700,952 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236774   ⟹   XP_006236836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,584 - 116,690,705 (+)NCBI
Rnor_6.04115,712,303 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236775   ⟹   XP_006236837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,954 - 115,901,869 (+)NCBI
Rnor_5.04180,288,855 - 180,487,010 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592629   ⟹   XP_017448118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,005 - 118,248,253 (+)NCBI
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592630   ⟹   XP_017448119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,877 - 116,690,705 (+)NCBI
Rnor_6.04115,700,942 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592631   ⟹   XP_017448120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,005 - 118,248,253 (+)NCBI
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592632   ⟹   XP_017448121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592633   ⟹   XP_017448122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,005 - 118,248,253 (+)NCBI
mRatBN7.24116,502,421 - 116,690,705 (+)NCBI
Rnor_6.04115,712,302 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592634   ⟹   XP_017448123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,048,460 - 118,248,253 (+)NCBI
mRatBN7.24116,490,924 - 116,690,705 (+)NCBI
Rnor_6.04115,700,946 - 115,901,869 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063286061   ⟹   XP_063142131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,006 - 118,248,253 (+)NCBI
RefSeq Acc Id: XM_063286062   ⟹   XP_063142132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,060,004 - 118,232,400 (+)NCBI
RefSeq Acc Id: XM_063286063   ⟹   XP_063142133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84118,096,856 - 118,248,253 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101339 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236820 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236822 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236823 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236826 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236827 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236828 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236829 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236830 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236831 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236832 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236833 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236834 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236835 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236836 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236837 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448118 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448119 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448120 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448121 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448122 (Get FASTA)   NCBI Sequence Viewer  
  XP_017448123 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142131 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142132 (Get FASTA)   NCBI Sequence Viewer  
  XP_063142133 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91173 (Get FASTA)   NCBI Sequence Viewer  
  EDL91174 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061606
  ENSRNOP00000061606.2
  ENSRNOP00000074138
  ENSRNOP00000074138.1
  ENSRNOP00000077445.1
  ENSRNOP00000078213.1
  ENSRNOP00000078253
  ENSRNOP00000078253.1
  ENSRNOP00000082754.1
  ENSRNOP00000087285
  ENSRNOP00000087285.1
  ENSRNOP00000097863
  ENSRNOP00000097863.1
RefSeq Acc Id: NP_001101339   ⟸   NM_001107869
- UniProtKB: D4A6X1 (UniProtKB/TrEMBL),   A6IAQ5 (UniProtKB/TrEMBL),   A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236827   ⟸   XM_006236765
- Peptide Label: isoform X11
- UniProtKB: A0A8I6GEZ7 (UniProtKB/TrEMBL),   A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236823   ⟸   XM_006236761
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZKQ3 (UniProtKB/TrEMBL),   A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236831   ⟸   XM_006236769
- Peptide Label: isoform X15
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236829   ⟸   XM_006236767
- Peptide Label: isoform X13
- UniProtKB: A0A8I5Y164 (UniProtKB/TrEMBL),   A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236835   ⟸   XM_006236773
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236833   ⟸   XM_006236771
- Peptide Label: isoform X18
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236837   ⟸   XM_006236775
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236820   ⟸   XM_006236758
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K7B6 (UniProtKB/TrEMBL),   A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236826   ⟸   XM_006236764
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236822   ⟸   XM_006236760
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236830   ⟸   XM_006236768
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236828   ⟸   XM_006236766
- Peptide Label: isoform X12
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236834   ⟸   XM_006236772
- Peptide Label: isoform X19
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236832   ⟸   XM_006236770
- Peptide Label: isoform X17
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236836   ⟸   XM_006236774
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448119   ⟸   XM_017592630
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448123   ⟸   XM_017592634
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448118   ⟸   XM_017592629
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448121   ⟸   XM_017592632
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448120   ⟸   XM_017592631
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448122   ⟸   XM_017592633
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074138   ⟸   ENSRNOT00000085765
Ensembl Acc Id: ENSRNOP00000061606   ⟸   ENSRNOT00000064536
Ensembl Acc Id: ENSRNOP00000077445   ⟸   ENSRNOT00000113535
Ensembl Acc Id: ENSRNOP00000078253   ⟸   ENSRNOT00000120244
Ensembl Acc Id: ENSRNOP00000097863   ⟸   ENSRNOT00000106282
Ensembl Acc Id: ENSRNOP00000082754   ⟸   ENSRNOT00000115270
Ensembl Acc Id: ENSRNOP00000078213   ⟸   ENSRNOT00000108867
Ensembl Acc Id: ENSRNOP00000087285   ⟸   ENSRNOT00000117268
RefSeq Acc Id: XP_063142132   ⟸   XM_063286062
- Peptide Label: isoform X23
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142131   ⟸   XM_063286061
- Peptide Label: isoform X16
- UniProtKB: A0A8I5ZVI7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142133   ⟸   XM_063286063
- Peptide Label: isoform X24
- UniProtKB: A0A8I6GM91 (UniProtKB/TrEMBL)
Protein Domains
C2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K7B6-F1-model_v2 AlphaFold A0A0G2K7B6 1-2134 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693196
Promoter ID:EPDNEW_R3715
Type:multiple initiation site
Name:Dysf_1
Description:dysferlin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04115,712,862 - 115,712,922EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311023 AgrOrtholog
BioCyc Gene G2FUF-43979 BioCyc
Ensembl Genes ENSRNOG00000032788 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064536 ENTREZGENE
  ENSRNOT00000064536.3 UniProtKB/TrEMBL
  ENSRNOT00000085765 ENTREZGENE
  ENSRNOT00000085765.2 UniProtKB/TrEMBL
  ENSRNOT00000106282 ENTREZGENE
  ENSRNOT00000106282.1 UniProtKB/TrEMBL
  ENSRNOT00000108867.1 UniProtKB/TrEMBL
  ENSRNOT00000113535.1 UniProtKB/TrEMBL
  ENSRNOT00000115270.1 UniProtKB/TrEMBL
  ENSRNOT00000117268 ENTREZGENE
  ENSRNOT00000117268.1 UniProtKB/TrEMBL
  ENSRNOT00000120244 ENTREZGENE
  ENSRNOT00000120244.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.150 UniProtKB/TrEMBL
InterPro C2_Ca-dep UniProtKB/TrEMBL
  C2_domain_sf UniProtKB/TrEMBL
  C2A_Ferlin UniProtKB/TrEMBL
  C2B_Ferlin UniProtKB/TrEMBL
  C2C_Ferlin UniProtKB/TrEMBL
  C2D_Ferlin UniProtKB/TrEMBL
  C2E_Ferlin UniProtKB/TrEMBL
  C2F_Ferlin UniProtKB/TrEMBL
  DysF_C UniProtKB/TrEMBL
  FerA UniProtKB/TrEMBL
  FerB UniProtKB/TrEMBL
  FerIin-typ UniProtKB/TrEMBL
  Ferlin UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
  Ferlin_DSRM UniProtKB/TrEMBL
KEGG Report rno:312492 UniProtKB/TrEMBL
NCBI Gene 312492 ENTREZGENE
PANTHER PTHR12546 UniProtKB/TrEMBL
  PTHR12546:SF44 UniProtKB/TrEMBL
  SPERM VESICLE FUSION PROTEIN FER-1 UniProtKB/TrEMBL
Pfam dsrm_Ferlin UniProtKB/TrEMBL
  FerA UniProtKB/TrEMBL
  FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  Ferlin_C UniProtKB/TrEMBL
  PF00168 UniProtKB/TrEMBL
PhenoGen Dysf PhenoGen
PROSITE PS50004 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032788 RatGTEx
SMART DysFC UniProtKB/TrEMBL
  DysFN UniProtKB/TrEMBL
  FerA UniProtKB/TrEMBL
  FerB UniProtKB/TrEMBL
  FerI UniProtKB/TrEMBL
  SM00239 UniProtKB/TrEMBL
Superfamily-SCOP SSF49562 UniProtKB/TrEMBL
UniProt A0A0G2K7B6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y164 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKH0_RAT UniProtKB/TrEMBL
  A0A8I5ZKQ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GEZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GM91 ENTREZGENE, UniProtKB/TrEMBL
  A6IAQ5 ENTREZGENE, UniProtKB/TrEMBL
  D4A6X1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Dysf  dysferlin   Dysf_predicted  dysferlin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dysf_predicted  dysferlin (predicted)      Symbol and Name status set to approved 70820 APPROVED